taf1b


Basic Information

Item Value
gene id taf1b
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41489377 ~ 41498110 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235254.3
gaTCCTGAAAGCCATTTTGGAAAACTGAGCGTGTAGTAAAGCGTGTTGTGGTAAATTTAAAACTGTGGGAGATACAGTGAGTGAAGCTGTCTAAACTCAGTTGAATGGATATGTCTCCTCCCTGAAACAACAcagaagtcattcagacatggACGAACATCTAACAgaGGGCTACAGTGAGCCCTGTAAGCAGTGTGGAGCTGTGTCCTGGGCGCTCTCAGATGGGTGTCAGTTCTTCTGCAGGAACTGCCACAATGTGATCGAGAAAACACAAGATGTTGTGGATGTATCCTCATTTAttctaaacaataaaatatcctCCATATCATCAAGCTCACGCAAGAAAACGAGAAGAGAAGGTGGACGAGAGTGGATGGTATGTGAAGGATTTCAGTTCATCCTAAAACTTCAGGCAGAAGCTTTGGTTGGTCTGGGTGTGTGCCCACAGTTTAAGaCAGATGTGCTCTGGGATTTCTGGAAGCGATACCTTCAGATAACCAGGCAGGCTTACACAAGATCACCAGTGAACAGTTTTACAAATACAGTGTACCTATCCTCTGAGAGTGAGCCGGAGTCTGCATTTCTAAGTGAAGcatcagatcagacagagcCTATGTCAGCCTCAGGACATTCCACTGATGGGAGATCTTCAGTGTGTTCAGGCTCTCTGGATGCCGCATGCTACCTCAGTGCAAAGGAGAGGAAGAGTCGCCAACTCATGAACATGCCCCGGACGCTGGCGCTGTGCCATCTGGCCCTGCTTTGGCTTCGGGAGGCCATCACACTGGCAGATTTGCTCAGGTTAGTGTCCAGGAGGCTCATTCCTTACATTAACGTCTATGAGGAGTTCCCGGAAGAGATGCAGTTTTATGGCAGGGATGCCATAATCTTTAGAGTGGAGACCATCCCCTCGTACAGAAAGGTGCATGGTGAGGCCCTGCAGATGGCTGAGATTCTGCAACTCCCTGCTTTCCCTCCTGTGACCTCTGACTGCCTCCTCCACCCGGCTCTACTCAGCCTCCGGTACCTGATGGAAGTTAACCTGCCTGATGAACTCCATTCATTGGTGTGCAGAGTAATAGAAAAATCAGCCATGGGAAAAGAATCGTTTCTGACTTTTAACCCTTCTAAGCCAAAGTCTACGTTCCTGTTCTATGACCTTCAAGCAGCAGCACTCATCATTGTGACCATGAAGCTTCTCTTTAAGCTGGACGATCACGTGGAGTGGACATTATCAAGGAAAGCAGTGAAAAAAGACGACCAAGGCAAGAAGAAAACTTCCAAGCAAGGCAGCAAGATGTTTAGTTTGAAAGCATGGTATATGACTGTGCATCCTGCTCTGGAGCGCgccagacagagagaagagcttTTTGAGGCTAGGCGACCATGGAAGTCCAAGAAGGTGCTCATTCCAGCAATGAAGCACAAGGCTGTGGTGCTAAAAAGACGACGTGTGGTTGAGCAGCTGCAGAGCAGTTTCCACACATTAACTGGCTCTGTTCCAGAGCAGCAGTCTTCCTCCCCGTCCAGCTTCCAGTTCCTCTGGGGACAGGAAGAGGATTCAGACGGACCCAGCCTCCACCACAAGCGCCTCAACTGCATGCTGGAGAAACGTGGAAAAGAAAAGTGGCTTGTCAACCAAGCGTACTGGCACACTGACCTGAAGCGCTGCCACAAAAAAGATTGTCGGGACCATTACTCTGAGCTGAAGCACAGTTTACCCAGGATGTACGTGTGGCTGCTGGGacttttctctttccttctgaGGGTCAGTGAGGCCCAGGTACATAAGGAAGTTGTTGAGGTAGAGCGACGCTTGCTGCTGAGGAAAGCTGTGCCTGAAGAAGATAACCataaacacagaaagagaaaggggaGAAAAACATCATCAAGCTTTTGATCGTTAAACTGTTTACCTCAACACAAATGAACAATCATTTTGCACATCTTGCCATTAACTGCCTTACGAAGATATTGTGCCCTGCATTGTTTACACTGACACAGACACATCTTTACTGTCTTTATCtctgttattttgagatatttgtTGCACATATTTCTCATTTATAGTGAGTATGATTTATACAGGACTTGTACAGGTCACTGACATAAATGACCAAGAGTCTGCCTTTACTTCATAGCCAGATATACTCCCTATATAAGAcccactcttaaaaataaagctttCTATGTGCTTA

Function

NR:

description
TATA box-binding protein-associated factor RNA polymerase I subunit B

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006360 transcription by RNA polymerase I biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235254.3 True 2198 mRNA 0.47 15 41489377 41498110

Neighbor

gene id symbol gene type direction distance location
klf11 klf11,LOC108410427 coding downstream 15626 41469369 ~ 41473751 (-)
rrm2 rrm2,LOC107668265 coding downstream 23676 41459608 ~ 41465701 (-)
LOC103042935 actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding downstream 38005 41447400 ~ 41451372 (-)
LOC111196450 actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding downstream 42912 41444016 ~ 41446465 (-)
scg5 scg5,LOC107756590,LOC107549096 coding downstream 54154 41431994 ~ 41435223 (-)
cpsf3 cpsf3,LOC107756584,LOC107693240,LOC107668237,LOC107549104,LOC107601862 coding upstream 69086 41567196 ~ 41577260 (-)
LOC103038827 LOC108410973 coding upstream 122889 41620999 ~ 41632164 (-)
LOC103041202 NA coding upstream 236471 41734581 ~ 41738023 (-)
LOC103030723 rnf144ab,LOC108411012,LOC107549108,LOC107693234,LOC107601775,LOC107668259,LOC107721372 coding upstream 387465 41885575 ~ 41911776 (-)
sox11 sox11b,LOC108411020,LOC107756575,LOC107668258,LOC107601767,LOC108258189 coding upstream 560720 42058830 ~ 42061451 (-)
G25381 NA non-coding downstream 82590 41404010 ~ 41406787 (-)
LOC111196423 NA non-coding downstream 86683 41402021 ~ 41402694 (-)
G25272 emc7,LOC107549094,LOC107671783,LOC107756596,LOC107721381,LOC107601948 non-coding downstream 239724 41244692 ~ 41249653 (-)
G25268 katnbl1 non-coding downstream 247006 41239669 ~ 41242371 (-)
G25255 NA non-coding downstream 265890 41222119 ~ 41223487 (-)
G25367 ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 non-coding upstream 35809 41533919 ~ 41545501 (-)
G25400 NA non-coding upstream 40073 41538183 ~ 41539618 (-)
G25473 NA non-coding upstream 219111 41717221 ~ 41717780 (-)
G25472 kidins220b,LOC103040274,LOC108258057 non-coding upstream 221542 41719652 ~ 41729250 (-)
G25474 NA non-coding upstream 231721 41729831 ~ 41730469 (-)
arhgap11a NA other downstream 46883 41436041 ~ 41442494 (-)
G25265 slco5a1 other downstream 270548 41214421 ~ 41218829 (-)
LOC111196341 NA other downstream 1258509 40175262 ~ 40230868 (-)
G24903 NA other downstream 2031188 39455236 ~ 39458189 (-)
batf batf,LOC107697118 other downstream 2164675 39309726 ~ 39324702 (-)
LOC111196508 NA other upstream 357985 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 370914 41869024 ~ 41880424 (-)
G25678 NA other upstream 1219556 42717666 ~ 42718389 (-)
G25785 NA other upstream 1600712 43098822 ~ 43111401 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 1997309 43495419 ~ 43517157 (-)

Expression


Co-expression Network