klf11 (klf11,LOC108410427)


Basic Information

Item Value
gene id klf11
gene name klf11,LOC108410427
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41469369 ~ 41473751 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235257.3
TCTCTGCTACACCTTTGTTTCTGATTGGTGACATGTTACCACCCGCCAGTCTGCTCTgaattttgtttctgtttttttctgctgcttCTCCGCTCCTCCTGATTCACTCAGCTGAGGCTGGTTGAACCTTGCTGTAAAAAAGTGGCTACACTTATGAGCGCAGGAGCTGCTGGGCGCTCGTGTCGCTTGTCCGCTAGTGCTGTTGTCTCCTGACTGCGCCTGTCTGAGCTCCACACATGCCGACTCTCGCTCCAGACTCGGGTCAGACCAGTCTCATGGACATCTGTGAGGTGATAATGGAGAGGAACAGGAAGGACAGTGAGAAGTCCTGCTCCACCACACTGCAGTACCATGACCTTGAGGCTGCTGAGGCACTGGTGTGCATGAGCTCTTGGGTCCAGAGGTCACCCAAACCGCGCCCGCTGACACCCACCTCCGACTCCTGTGACTCGCTCAGTCTGCACCATGAAATCCCCCTGGAATCCCCCAAAGACCTGGTGTCCCTCTCTTCACTATGCATGACCCCACCACACAGCCCCAGCTTTGCTGAGACTGCTACAACTTCtgccatcatcaccaccatgaCTCCTCTGGCTGGGTTGGGTCTCAAACCGAGTGTCTCACAGCCCAGAATGTGTCCCGTACTGACCAACGTGGCTGCAAGCCATGGCAGCACCACATTCCTACCAAACACTcttccaccaccaccaccaccactaccctCTGAGCCACCTTGCAGGGCCATGGCCACCAGTGTCATACGGCACACTGCAGACACATCTCTAGATCACCACATTCCATCCCCTTCCACAGTACAGGAGAGGCCAGGACCCTCAGAGAGTCCTGTCCAACAAACTGATTCCAATACCCAGGTTGCCATACTGACTGAAACACAGGTATGCAGTAGTCCATGTACTACAGCAGAAGGGGAACAAACTGTCCCCTCACCCAGTTCCTCAAACCCTGTTTCACAGTCCTCCCACTCCATGCCTACATCCCCAATAGCCAGCCCTCCAGTTCTCTGCCAGGTGTTTCCCGTGAATGGGCAGACTGGCATCATCTCCGCAATCGTTCAGACACACGTTCAGATGCAGGCCACTGGGCAAAAGCCCATTCTCCCACAGTCACCCTCTTTTTCTCAGCCTCTTCTTGTGGGGTCTCCAGTGGCTCAAGGGACCGTGATGTTTGTGGTCCCCCAGTCTCAGGCCCCTCCATGCCAACAAAATGTTGTGACTGTTGGCAGCACCAAACTCCTGCCCCTGGCCCCTGCCCCGGTTTACATGCCCCCAGGTCAGAGTGGGGGCACCACACAGACAGACTTCTCTCGCAGACGGAACTACGTCTGTAGCTTCCCAGGATGTAAGAAGACCTACTTCAAGAGTTCTCACTTAAAAGCCCATCTGAGGACCCACACAGGTGAGAAGCCTTTCAGTTGCCACTGGGAGGGTTGTGACAAAAAATTTGCACGGTCTGATGAACTTTCTAGACACCGCCGCACGCACACAGGGGAGAAGAAGtttgtgtgtcctgtgtgtgatCGGCGCTTCATGCGAAGTGACCACTTGACCAAGCATGCCCGTCGTCACATGACCACCAAGCGGTCCTCAACATGGCCCACCGAAGTGCGTGAGCTCAACAAAATGGCCTCCTCCCAGACGCCATCTACACAGTCTTCTCTTGCTCTCAGTGTCCTCTTACCTGCCTCAACCTAGGCCAAACCTCACGCCACTCCGTCACCTCAGGACAATATCCCACTGACCATTTTACAGTGGAAACAGAAAACCAAGGCTGCTACACATCCATGTACAAAACAGACTGACCTTGCActggattttgttttgttttctaccaTGGTCATTTATAAGGAATTATTGTTTACTTTTGTATAAGTTATGTCTCCCAAACTGTATGCACTTCCTTTGCCAAAGTCTTTGTGTCAGTTCATATTACTTATTCTAAACCGTTGTATATTTGTACATAAATTATAACTATCTATATGAATGTAATGTGTATTCAAACATGCATTTATTgacaatatatgaataaatgtcTCTGTAAAGTGAATAGTATTCCTACCTGTGATACTACCTATCTTCCtttgaatattatttaataatgaacATTTGAAGATTCAAATAAACCATCATGCTTATGA

Function

symbol description
klf11 Enables DNA-binding transcription factor activity, RNA polymerase II-specific and transcription cis-regulatory region binding activity. Involved in negative regulation of cell population proliferation; positive regulation of apoptotic process; and regulation of transcription, DNA-templated. Located in cytosol; focal adhesion; and nuclear body. Implicated in maturity-onset diabetes of the young type 7 and type 2 diabetes mellitus.

NR:

description
Krueppel-like factor 11

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09209 KLF10_11, TIEG; krueppel-like factor 10/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235257.3 True 2155 mRNA 0.50 4 41469369 41473751

Neighbor

gene id symbol gene type direction distance location
rrm2 rrm2,LOC107668265 coding downstream 3668 41459608 ~ 41465701 (-)
LOC103042935 actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding downstream 17997 41447400 ~ 41451372 (-)
LOC111196450 actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding downstream 22904 41444016 ~ 41446465 (-)
scg5 scg5,LOC107756590,LOC107549096 coding downstream 34146 41431994 ~ 41435223 (-)
LOC103044553 grem1 coding downstream 37462 41428183 ~ 41431907 (-)
taf1b NA coding upstream 15626 41489377 ~ 41498110 (-)
cpsf3 cpsf3,LOC107756584,LOC107693240,LOC107668237,LOC107549104,LOC107601862 coding upstream 93445 41567196 ~ 41577260 (-)
LOC103038827 LOC108410973 coding upstream 147248 41620999 ~ 41632164 (-)
LOC103041202 NA coding upstream 260830 41734581 ~ 41738023 (-)
LOC103030723 rnf144ab,LOC108411012,LOC107549108,LOC107693234,LOC107601775,LOC107668259,LOC107721372 coding upstream 411824 41885575 ~ 41911776 (-)
G25381 NA non-coding downstream 62582 41404010 ~ 41406787 (-)
LOC111196423 NA non-coding downstream 66675 41402021 ~ 41402694 (-)
G25272 emc7,LOC107549094,LOC107671783,LOC107756596,LOC107721381,LOC107601948 non-coding downstream 219716 41244692 ~ 41249653 (-)
G25268 katnbl1 non-coding downstream 226998 41239669 ~ 41242371 (-)
G25255 NA non-coding downstream 245882 41222119 ~ 41223487 (-)
G25367 ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 non-coding upstream 60168 41533919 ~ 41545501 (-)
G25400 NA non-coding upstream 64432 41538183 ~ 41539618 (-)
G25473 NA non-coding upstream 243470 41717221 ~ 41717780 (-)
G25472 kidins220b,LOC103040274,LOC108258057 non-coding upstream 245901 41719652 ~ 41729250 (-)
G25474 NA non-coding upstream 256080 41729831 ~ 41730469 (-)
arhgap11a NA other downstream 26875 41436041 ~ 41442494 (-)
G25265 slco5a1 other downstream 250540 41214421 ~ 41218829 (-)
LOC111196341 NA other downstream 1238501 40175262 ~ 40230868 (-)
G24903 NA other downstream 2011180 39455236 ~ 39458189 (-)
batf batf,LOC107697118 other downstream 2144667 39309726 ~ 39324702 (-)
LOC111196508 NA other upstream 382344 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 395273 41869024 ~ 41880424 (-)
G25678 NA other upstream 1243915 42717666 ~ 42718389 (-)
G25785 NA other upstream 1625071 43098822 ~ 43111401 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 2021668 43495419 ~ 43517157 (-)

Expression


Co-expression Network