LOC103022398 (LOC103022398,LOC108412744,LOC108259816)


Basic Information

Item Value
gene id LOC103022398
gene name LOC103022398,LOC108412744,LOC108259816
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37497889 ~ 37503953 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235852.3
AGCTCAAACTGAACCGGAGAAATGCGTGTGCGCGCGGatacacagcagcagcagcagcgccccctgctgtttctGCTCTTACTACTACAACTTCTACTACAGCACGGAGAGGGAATATACTGGCTtgGTCTAGCTTCCCGTGGCATTCCTGTGAGTTGGAATCACACTCAACACTGCAAGCTCCTCCACACTCTGGCTCCagatcagcagcagctctgtcGGAGAAACCTGGAGCTGATGGGCAGCGTGGTTCAGGCGGCCGAACTGACTAAAGCAGCCTGCCAGAGTACCTTTAAAGACATGCGATGGAACTGCTCATCCATACAGAGTGCACCGAACTTCAGCCCAGACCTGGCCAAGGGTACACGTGAATCTGcatttgtgttttctctctctgcgGCTGTGTTAAGTCACTCTATCGCTCGCTCTTGTGCATCCGGTGCTCTGCCCAGCTGCTCCTGTGCTCCGGCCCCGGCTGAGCAGGCCTCATCTGATTTTCGGTGGGGGGGCTGTGGAGATAACGTTCATTATGGAATGCAGATGGGCTCTGCCTTCTCTGATGCCACACTCAATAGCAGGCGCTCTGGATCCCCATCTATCAGACTGATGCACCTGCACAACAACGCAGTTGGCAGACAGGCGGTACTGGACTCCTTAGAGACAAGGTGTAAGTGTCACGGCGTCTCCGGCTCATGCTCTGTGAAGACATGTTGGAAGTCCCTGCTGGATGTGGGTCAAATTTCAGCTCAGCTGAAAGCCCGCTACCTTTCAGCCACCAAGGTGGTCCCACGGCAGATGGGGTCACGCAGGCAGTTGGTTCCCCGGGAGATGGAGGTGAGACCGGTCCTGGAGAATGAACTCGTCTACTTAATCAGCTCACCTGACTACTGCTCGTACAATACCAAGCATGGATCATACGGAACCACTGACAGACAGTGCAATAAGACAGCCACTGGCAGCAGTAGCTGTGGTTTGATGTGCTGCGGCCGTGGATACAACACGTACACAGAGCAGGTGGAGGAACGCTGCAACTGCCGCTATCACTGGTGCTGCTACGTCACCTGCAAGAAATGCCAACACACagtggagagacatgtctgcaAGTGAGACTTGCAGAAAGActgagagaaaaggagagattccagtcCCCTATTCTGTATCTTTTTGTCATTGTCACACTCCTGAACTTTGTAGCTTGTAGTGCTTACCTTATAAAATAAGTGTGGGCTTTGCTTTGTTTGGAAAATGGAACAAGAGTCAAACTCCCTTATGCTTGCAGACAGAGAGCCAGGTCGAAACATCAGGCTAGTAATTAGCATGTGCTAATTTGCTAAGTTAGCTAAACTTCTTAATAGCCTAGTAAAACATGGCTAGTTTGCAGACTGCTCTGCTCAagctaataatatttaaaatgacttcacctcattaaaacaaaactataacTATAGCAGGCTGCTTAGCTTTTATATAAGCTAACATTTGTAAGTAATTTGTTAGGACATCAGCTATGCTTGAGTGTTGGAATACttttcaatacattttaaaggggAGGTCTTGATGTACATTTCTGTTCTGGAAGCACTGGATATATTCAGACGAGGACTCTACGTCTGAGGAGGGTGCCGATGTGGAAGCCGCTGTGTGTTTGCTATCGAGAGGAATTTCCCACAGGGGTGAAGAGTGAAGCACTgagaagagaaggagggagagcaAGTGATGAAAGGAAAGATTCCTGAGTGAATAGAGTGAACAATGGGATGAGCACAAGACAATGGGCCAAGGTGTCAGACTGAAACTCCAGAGGTGGAAACAACAAGGACCCAAATACTGATTAACCTGCTTCAGGAACctcagggagagagaaaaagaaaaagagagatgaagGGGGAAGGGTAGCATTGTGTgttactcttttttatttatttaatagagatTATTCTTTCTTAAAGTGATAGTTGAGCTACAAAACGTCTGATCCCAAACTGAGCTGTAAGGATAATGTAGCAAACAATTAATAGATTAAGTAGTTATTCCCTACCAGTTAGCACCTGAGCTACATGGCTAATGCAGCTAACATATAATAGAAGCATATACCCCACTGATTAGCACGGTGTTATCTGCACtacatcatcatttttaaaattgcTGTTGTGGTTCCTGACACTGTATGACCGTAACAGTGTAATAGAAAACACTGTTATCTATAGACATGGATTAAAGTATAAATCAGAGCTCAACACAGTAGCAGCATGAACTTTTCTTCATGTTTATAGAAAACAGTGATtcatacagtgtcagaaacgGCATAAACAAGTCTATAGCATGTTATTTAGAGGGATCAGAACCATATAAcgctggaacacaaaaaaataacctGTCACCAGTCCTGTTGTTTCACTTTAAATGCAAAAGAAGCTACAGTTGTTTTTACTGGTCAACTACATTTAGGTTAAGAGTGATGGGGGTCTAAGATCTTTTTGCTTAAGTATCACTTTAACTGTAGctaattgtaaatataaaataacagatttattgtacattttgctgtaaaatatgta

Function

NR:

description
protein Wnt-11-like

GO:

id name namespace
GO:0030100 regulation of endocytosis biological_process
GO:0060898 eye field cell fate commitment involved in camera-type eye formation biological_process
GO:0090037 positive regulation of protein kinase C signaling biological_process
GO:0035567 non-canonical Wnt signaling pathway biological_process
GO:0031016 pancreas development biological_process
GO:0030182 neuron differentiation biological_process
GO:0051496 positive regulation of stress fiber assembly biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0001839 neural plate morphogenesis biological_process
GO:0045860 positive regulation of protein kinase activity biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0060021 roof of mouth development biological_process
GO:0007417 central nervous system development biological_process
GO:0060031 mediolateral intercalation biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0030336 negative regulation of cell migration biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0001947 heart looping biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0061101 neuroendocrine cell differentiation biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005109 frizzled binding molecular_function
GO:0030295 protein kinase activator activity molecular_function

KEGG:

id description
K01384 WNT11; wingless-type MMTV integration site family, member 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235852.3 True 2558 mRNA 0.45 5 37497889 37503953

Neighbor

gene id symbol gene type direction distance location
eda eda,LOC106603304,LOC107655915,LOC107757537,LOC106567777 coding upstream 7656 37438083 ~ 37490233 (+)
c3hxorf56 cunhxorf56,cssa13hxorf56,zgc:103697,LOC107548454,LOC107655899,LOC101478835 coding upstream 494114 36983182 ~ 37003775 (+)
stard8 stard8 coding upstream 700993 36672971 ~ 36796896 (+)
LOC111191796 NA coding upstream 869284 36626768 ~ 36628605 (+)
yipf6 yipf6,LOC107596694,LOC107746343,LOC107757533 coding upstream 877900 36611263 ~ 36619989 (+)
igbp1 igbp1 coding downstream 6981 37510934 ~ 37517867 (+)
LOC103021778 NA coding downstream 129828 37633781 ~ 37637628 (+)
LOC103046026 cx27.5,LOC108414812,LOC107597344,LOC107687661,LOC107680359,LOC107592389,LOC107732608 coding downstream 465281 37969234 ~ 37975259 (+)
LOC103045011 LOC103045011,LOC108414810 coding downstream 480759 37984712 ~ 37988933 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding downstream 840436 38344389 ~ 38350324 (+)
G24188 NA non-coding upstream 5611 37487138 ~ 37492278 (+)
G24168 NA non-coding upstream 184560 37231790 ~ 37313329 (+)
LOC111196047 NA non-coding upstream 228789 37259808 ~ 37269100 (+)
G24164 NA non-coding upstream 281368 37216086 ~ 37216521 (+)
G24160 NA non-coding upstream 346218 37151439 ~ 37151671 (+)
G24219 taf1,LOC108412743,LOC107596195,LOC105893216 non-coding downstream 47585 37551538 ~ 37552253 (+)
G24228 NA non-coding downstream 67301 37571254 ~ 37576892 (+)
G24231 NA non-coding downstream 78167 37582120 ~ 37585290 (+)
G24237 NA non-coding downstream 108218 37612171 ~ 37612601 (+)
LOC111191733 NA non-coding downstream 112825 37616778 ~ 37620270 (+)
ar ar,LOC108443198 other upstream 1038960 36249824 ~ 36458929 (+)
LOC103040783 LOC108411309 other upstream 1401163 36043431 ~ 36096726 (+)
trdn NA other upstream 2195542 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 3533381 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 3717986 33777942 ~ 33779903 (+)
LOC111194342 NA other downstream 85153 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 424402 37928355 ~ 37933989 (+)
G24390 NA other downstream 589021 38092974 ~ 38098324 (+)
G24431 NA other downstream 728640 38232593 ~ 38237041 (+)
G24463 NA other downstream 855382 38359335 ~ 38382310 (+)

Expression


Co-expression Network