slc25a29 (slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC108257962,LOC107564594)


Basic Information

Item Value
gene id slc25a29
gene name slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC108257962,LOC107564594
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43179427 ~ 43189359 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238367.3
GTCCGCACACACCTCCCGCTCTGACACCGGGCCTGAAACAGAAATAGACAGGCCTGCAGGTGGTAGTGACTGAGGAGGTGTAATTTTCCACTACGACCCGGGTAATCGGCGGCGGTGCTGCAACAGCTCCTCTCCTGCGTTAACTCGGTGATcggtgtatgtgtgtttgtgaaccAGCGCTTAAGATCTGCAGCAGACCTCCGCTCGCTGCGCTGAACCAACACTGGGACACTGTGATCGTTAGCCGGTGAGCTAACGAGCCAACTAACTAAGTAACCTCCAGCCAGTCCTGCGCTCTGAGTATACACCCTCAGGAGCTCACCGGCCCGGTTAACCGATTATAAAACACCCGAAAGATCACACGAGGGGAGCCGAGGCCGCCGGCGAGGGAAGACTGTCTGCAGGAGAGGAATAATGGACTTCCTTGCTGGCTGCATAGGAGGTGCTGCTGGGGTCCTAGTGGGACATCCATTTGACACTGTAAAGGTCAGACTCCAAGTGCAGAGTGCAGACAAGCCTCTCTACAAGGGAACCATACACTGTTTCCAGTCTATTATACGTCAGGAATCACTGCTGGGGCTTTACAAAGGCATTGGTTCTCCTATGATGGGCCTCACTTTCATCAATGCCATTGTCTTTGGTGTGCAAGGAAACACCATGCGTCTGCTGGGCAAAGACACACCGCTGAACCAGTTCCTGGCAGGAGCAGCTGCTGGGTCTATCCAAAGCGTCATTTGCTGTCCCATGGAGCTGGCCAAGACACGCATGCAGATGCAAGGTACTGGCGTTAAGAAGTCATCGACTCGCAAGGTCTACAAAAACTCCCTGGATTGCCTGGCTCGCATATACCAGCGCGAGGGTCTGAGAGGCATCAACAGGGGCATGGTCACCACCCTCATCCGTGAGACCCCAGGCTTTGGAGTGTACTTTCTCGCTTATGATGTGCTCACACGCTCACTAGGCTGCGAGCCAGAGGACCCCTACATGATCCCTAAACTACTGTTTGCTGGCGGCATGTCGGGCATCGCTTCGTGGCTTTCCACATACCCTGTTGACGTGATTAAGTCTCGACTGCAGGCAGATGGGGTTGGGGGCAAGTACCAGTACAGCAGTATTATGGATTGCACACGGAAGAGCATAGAGCGGGAGGGCTTGCGAGTGTTCACGCGTGGCCTGACATCCACTCTGCTCCGAGCATTCCCTGTGAACGCAGCCACTTTTGCTACCGTTACACTGTTTCTCATGTATGTACGTCAAGATGAGGAGCCTAAAGACTGTGAACCTGCTCCTCAACACCATACTGCGTTACAGCAGCAAGCACAGCCGTCCAGCCTGTGACGTGGTTGTGACCGTCAGCGAGACTGGTGTGAATATTGATTCTTGGGAGGCATTGTGGCATCTGTTACTAAGAAGTTTCAAGTTTAAACAGTTATAAACTTCTGCCCTCTGTTAAAGAAATGACATATCCAGTCTGTAAacctatgtatgtgtgtatgcttgtgcagtgtaaaactgcatttgtacatattttattgtatgatgtaaatgggagaaaaaaaaggttttaagcaAAAATATTTGCTCATTTTGATTGTATGTACATATTAATTTTCCCTGCCTTACAAGAACACcagttaaattaaaagaaagtaCGTTGGTGGGAATCTAATTTTAATACCACTGTCTGCAAGAGTCAGTTCTGCCTCTGCCCTTTTTTCACAGCAGAAAAAGTACATGTGCTGCTGCTATTGATATTGGTATTGCACACTGCAGCTAAGAGGCATGAATTACTGTAGCATTGGATGTAACCAAATAACTTCATCTCATCTTGTTACTGGATGCATTGCTGGAAAGGTAATAAATAACACACTACCTCGTCATATACAGTGGTTCATAATCCAGATTTCAAAAATGCACTATTGGTTGCTTCCTTGTAAAATGAAATGGAATTGcgcgtgtgtatatataaataagaaaactACACCTTTCCTTCCtgttgtgtaaaatgttttacagataTTCTATCTGTATAAAAGCACAGATCAgaagaaaatatgtttaattatattttaaagacGTCCAAGCTGGCCTCCAAATTTTGTGTTGCTCAGTTTcaacaaaagtattaaaaatactgaaagAAAACTGACCGTGAACCAAGTTCTGTCATTTAATGCACGTGAATGAGTAAAGGGTTTGTAAAGCTTAAGAACCCTTATCTTATCCTGGCAGTAGTTGCACAGACTATCTTTTACTATtcaaaatgaatgcatttttgtATAGTCTGCATTATTTAAACTTGAGACTTGTGATCTCTTTAGATAACCATGGTCACTGTGGTATCGGCACATTCACTTTGAATCAGTACGAAATTAAGATGACCTATGTGTTACAGGCAGAAATGTACCAGTCAAGTACTTAATCCCAGCCATGATGTATAACATACATTGTTTTTCATACTTTATCTGTGAATAATAAAGATAACTCATTGTGTTTAGAAGAAGGGAAGTTATATGTTTGTCTGAAGATTGTTTAAGAAGGGATTAGAGTGTGGGAAGAAATGTAAATGGATTTGGACTTTTTGTGGAAAAGTATTAACAGAAATGGAATCCCATGACAATCATGGCTGCTAGTAGAAACTGCATTATAGTGGGTAATTAGACACCTTATAATGCACTTTGAGAAGGTCAAAGTCTGCTGTATGTAAACCTCTGATGAGGTGATTACTTGTATCCTGTACATCACGTACATATTATGTATTCCATTAAAACGCAAGCTTTAGAGAGTTTTTCTTGGTACCTGGTTAGGGTTCTGAAATGAATGTTAAGTAAACAGCTCTTTAGATGTAGCTTTAGGGTTGTTTTTTATATGAGGTAGTTCTTTTCCTGCTGTAAAAGAAATGTTAACTGTACTAGAATGCctcttatttttataataaaaagatGGCTTACAGCATtgactattgtttttttttttgtaaagtgtaGTTGAACTAAGTAATGTATGGTGCATCTAaaatcaaatacaatgtgaaaataaagagaaatgacA

Function

symbol description
slc25a29 Predicted to enable acyl carnitine transmembrane transporter activity. Predicted to be involved in acyl carnitine transport and amino acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC25A29 (solute carrier family 25 member 29).

NR:

description
mitochondrial basic amino acids transporter-like isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15109 SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238367.3 True 3051 mRNA 0.43 4 43179427 43189359

Neighbor

gene id symbol gene type direction distance location
LOC103042238 hpcal1,LOC108411356,LOC107549126,LOC101077504,LOC108258003 coding downstream 116259 43051888 ~ 43063168 (-)
c3h2orf70 NA coding downstream 280944 42895773 ~ 42898483 (-)
fndc1 fndc1,LOC107549078 coding downstream 288355 42826068 ~ 42891072 (-)
wtap wtap,LOC107696108,LOC107601562,LOC107726473,LOC107549122 coding downstream 419437 42752009 ~ 42759990 (-)
acat2 acat2,LOC107732634,LOC107549121,LOC107693222,LOC107696107 coding downstream 427785 42746474 ~ 42751642 (-)
LOC103025090 ppp2r5cb,ppp2r5c,LOC103025090,LOC108411434,LOC107704375,LOC108257814,LOC104924693,LOC103369946,LOC100694131,LOC101473650 coding upstream 106100 43295459 ~ 43326032 (-)
LOC103024139 LOC107100300,LOC107378075,LOC108257811 coding upstream 139248 43328607 ~ 43336669 (-)
LOC103024454 hsp90aa1.1,LOC103024454,LOC108411468,LOC108257813,LOC107704377,LOC107557012,LOC107564585 coding upstream 147488 43336847 ~ 43341516 (-)
mgat2 mgat2,LOC107728126,LOC107564584,LOC107704380 coding upstream 161534 43350893 ~ 43356000 (-)
LOC103027377 LOC108416125,LOC101075333,LOC106560396 coding upstream 410298 43599657 ~ 43664802 (-)
G25802 myh6,LOC103031694,LOC102786665,LOC780532,LOC108251423 non-coding downstream 208 43172973 ~ 43179219 (-)
G25797 LOC108411385 non-coding downstream 8213 43160421 ~ 43171214 (-)
G25776 NA non-coding downstream 44141 43119814 ~ 43135286 (-)
G25774 NA non-coding downstream 47675 43124819 ~ 43131752 (-)
G25777 NA non-coding downstream 52094 43061698 ~ 43127333 (-)
G25874 NA non-coding upstream 171129 43360488 ~ 43363090 (-)
G25902 NA non-coding upstream 272310 43461669 ~ 43462154 (-)
G25903 NA non-coding upstream 294730 43484089 ~ 43484368 (-)
G25986 palld,LOC107755258,LOC106560254 non-coding upstream 677017 43866376 ~ 43885038 (-)
G26009 NA non-coding upstream 732517 43921876 ~ 43924352 (-)
G25785 NA other downstream 68026 43098822 ~ 43111401 (-)
G25678 NA other downstream 461038 42717666 ~ 42718389 (-)
LOC111196586 LOC108262118 other downstream 1299003 41869024 ~ 41880424 (-)
LOC111196508 NA other downstream 1313583 41856095 ~ 41865844 (-)
arhgap11a NA other downstream 1736933 41436041 ~ 41442494 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 306060 43495419 ~ 43517157 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other upstream 485666 43675025 ~ 43678862 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other upstream 701270 43890629 ~ 43899760 (-)
fkbp1b fkbp1b other upstream 1579905 44769264 ~ 44799505 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other upstream 1666740 44856099 ~ 44870690 (-)

Expression


Co-expression Network