l3hypdh (l3hypdh,LOC107684001)


Basic Information

Item Value
gene id l3hypdh
gene name l3hypdh,LOC107684001
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61693955 ~ 61704828 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238741.3
GCAGGGGGCGGTATAGGGACCCGCTGTATGAACTATTCTCTGTAGACACGGAGCTGCTGGAGTGAACAGAACTGCAGTGTGTAGCGGAGGACTGGACTGCTCCTGGTTCAGATTTAATCTGGCCCAATGGAATTTCCGAAGCTTCCTCCTCATGATGGACCTGTTTTGTCAGTGGTGGACATGCATACTGGAGGAGAACCTTTGCGGGTCATCATAAACGGTTATCCAGAGGTGACTGGGGACACAGTCCTCGCCAAACGGCGTTATGCACGAGAACATCTTGACCACCTTCGTAAAGTTCTGATGTTTGAGCCCCGCGGTCACTATGATATGTATGGAGCCTTACTGGTCCAAAGTGAAATAGCAGAAGCGGACATCGGGGTTCTGTTTATGCACAACGAGGGCTACAGCACTATGTGTGGCCATGCTGTTATTGCGCTGGGGCGCTTTGCTGTAGACTATGGCCTGGTTAAGTCCCCTACCTCACCAGagacacaaataaacatacactGCCCATGCGGCTTGGTGAAGGCTTTTGTGGAATATTCCAACGGGAAAACTGGAGCAGTGAGATTCCACAGTGTTCCAGCTTTTGTATTTGCCACAGACGTGAAAGTAACTGTACCGGGATTTGGTGAAATCACAGTAGACATAAGCTATGGAGGAGCTCTGTATGCTTTTGTGAATGCTGACAGCTTTAGAATGGATGTCAGTAAATCCAGAACCAGAGACCTGGTGGATGTGGCCACTGCAGTGAGCAATGCAGTCAAATCTCAGGTGAAGCTGCATCATCCTGTTAGCGATGATCTAGCTTTTCTTTATGGCACCATCCTCACTGATGGCAAAGATGCCTTCTCTGACGAGCCTACAGCCAACATCTGTGTATTTGCTGACGCTCAGgtgGACAGGAGCCCCACTGGATCAGGTGTGACAGCCCGCATCGCTCTGCAGTACCACAAAGGACTGATCCAACTGCACCAGACCAGGAGCTTTAAGAGCGGTACCACAGAAGCTCTATTTACAGGCAAAGCAGTACAGGAGACCACCTGTGGAGAGTTCAAAGCAGTGGTGGTCGAGGTTGCGGGTCATGCCTACTACACAGGAGCAGCCAGCTTCACTCTGGAGAACAGTGACCTCCTTAAGGATGGCTTCCTTCTCAGATGAGCTTGTGTTAATACTGAAGGCAAGACTTAATTATTTGGAGTGAATTTGTGCCAAATTTCAGTCCATTCATATGCAAATGTTTAAGCAGTGAAAATAAGTCCTAAAGATAAGATCTAAAACAACATCTGTTGATTGTAATTcacaatttatatttatttactgaatgtAATAGTAAATACATGTGAAACACTtctctaatttatttttgttttatccaATACATTGGCATGTCAAATGTCATGGAGTGCTTGCGGGTACAATTTGAGCTAGCAGTCACCGGTCATTATCTTTATAATGCCCTCTGTTTCTTATTACCGACATACATGTGACCCTGTGGATGGAGGAGTGTTAGATGTcttcagaaaataaaactgacaagattcaacctcactcacaggaCAACACCTCAGAATTTACACAAATATGGGTGTTCCCAAGCAGACCTCTGAGataacactttatgatcaattCACATACTGttatcctatgacttttggtatgtcaatgtattaagtaaataaactggAAGTGATTTTATATGTGCAGCTTTGTGTAACCTGTAGACAAAAATcagcaaaacctttttttagcAGAGATGTCCATACAGGTGCTATTTCACATTTCTTCTGTGATCATAACTATTGGGTCCAGTTCATTTGATCTATATTTCATTTGccttaataatgaataaaattcagtttaaaaata
>XM_007238742.3
AGCAGGGGGCGGTGTAGACACAGAGCTGCTGGAGTGAACAGAACTGCAGAGTGTAGAGGACTGGACTGCCCCTGGTTCAGATTTAATCTGGCCCAATGGAATTTCCGAAGCTTCCTCCTCATGATGGACCTGTTTTGTCAGTGGTGGACATGCATACTGGAGGAGAACCTTTGCGGGTCATCATAAACGGTTATCCAGAGGTGACTGGGGACACAGTCCTCGCCAAACGGCGTTATGCACGAGAACATCTTGACCACCTTCGTAAAGTTCTGATGTTTGAGCCCCGCGGTCACTATGATATGTATGGAGCCTTACTGGTCCAAAGTGAAATAGCAGAAGCGGACATCGGGGTTCTGTTTATGCACAACGAGGGCTACAGCACTATGTGTGGCCATGCTGTTATTGCGCTGGGGCGCTTTGCTGTAGACTATGGCCTGGTTAAGTCCCCTACCTCACCAGagacacaaataaacatacactGCCCATGCGGCTTGGTGAAGGCTTTTGTGGAATATTCCAACGGGAAAACTGGAGCAGTGAGATTCCACAGTGTTCCAGCTTTTGTATTTGCCACAGACGTGAAAGTAACTGTACCGGGATTTGGTGAAATCACAGTAGACATAAGCTATGGAGGAGCTCTGTATGCTTTTGTGAATGCTGACAGCTTTAGAATGGATGTCAGTAAATCCAGAACCAGAGACCTGGTGGATGTGGCCACTGCAGTGAGCAATGCAGTCAAATCTCAGGTGAAGCTGCATCATCCTGTTAGCGATGATCTAGCTTTTCTTTATGGCACCATCCTCACTGATGGCAAAGATGCCTTCTCTGACGAGCCTACAGCCAACATCTGTGTATTTGCTGACGCTCAGgtgGACAGGAGCCCCACTGGATCAGGTGTGACAGCCCGCATCGCTCTGCAGTACCACAAAGGACTGATCCAACTGCACCAGACCAGGAGCTTTAAGAGCGGTACCACAGAAGCTCTATTTACAGGCAAAGCAGTACAGGAGACCACCTGTGGAGAGTTCAAAGCAGTGGTGGTCGAGGTTGCGGGTCATGCCTACTACACAGGAGCAGCCAGCTTCACTCTGGAGAACAGTGACCTCCTTAAGGATGGCTTCCTTCTCAGATGAGCTTGTGTTAATACTGAAGGCAAGACTTAATTATTTGGAGTGAATTTGTGCCAAATTTCAGTCCATTCATATGCAAATGTTTAAGCAGTGAAAATAAGTCCTAAAGATAAGATCTAAAACAACATCTGTTGATTGTAATTcacaatttatatttatttactgaatgtAATAGTAAATACATGTGAAACACTtctctaatttatttttgttttatccaATACATTGGCATGTCAAATGTCATGGAGTGCTTGCGGGTACAATTTGAGCTAGCAGTCACCGGTCATTATCTTTATAATGCCCTCTGTTTCTTATTACCGACATACATGTGACCCTGTGGATGGAGGAGTGTTAGATGTcttcagaaaataaaactgacaagattcaacctcactcacaggaCAACACCTCAGAATTTACACAAATATGGGTGTTCCCAAGCAGACCTCTGAGataacactttatgatcaattCACATACTGttatcctatgacttttggtatgtcaatgtattaagtaaataaactggAAGTGATTTTATATGTGCAGCTTTGTGTAACCTGTAGACAAAAATcagcaaaacctttttttagcAGAGATGTCCATACAGGTGCTATTTCACATTTCTTCTGTGATCATAACTATTGGGTCCAGTTCATTTGATCTATATTTCATTTGccttaataatgaataaaattcagtttaaaaata
>XM_022664062.1
AGCGGTTCCTCAGTGCAGATCGTTAGCTGGTCATTGTGGTGTGACAGTGCTGAAGAGACACAGTTAGATCTGGACTGAGGGAGACTCAGGACTAGAAGCTGAAGTTACAGAGAGGAGTCTAAACTAGTGAAATTTAAAATGAGCCCAATGGAATTTCCGAAGCTTCCTCCTCATGATGGACCTGTTTTGTCAGTGGTGGACATGCATACTGGAGGAGAACCTTTGCGGGTCATCATAAACGGTTATCCAGAGGTGACTGGGGACACAGTCCTCGCCAAACGGCGTTATGCACGAGAACATCTTGACCACCTTCGTAAAGTTCTGATGTTTGAGCCCCGCGGTCACTATGATATGTATGGAGCCTTACTGGTCCAAAGTGAAATAGCAGAAGCGGACATCGGGGTTCTGTTTATGCACAACGAGGGCTACAGCACTATGTGTGGCCATGCTGTTATTGCGCTGGGGCGCTTTGCTGTAGACTATGGCCTGGTTAAGTCCCCTACCTCACCAGagacacaaataaacatacactGCCCATGCGGCTTGGTGAAGGCTTTTGTGGAATATTCCAACGGGAAAACTGGAGCAGTGAGATTCCACAGTGTTCCAGCTTTTGTATTTGCCACAGACGTGAAAGTAACTGTACCGGGATTTGGTGAAATCACAGTAGACATAAGCTATGGAGGAGCTCTGTATGCTTTTGTGAATGCTGACAGCTTTAGAATGGATGTCAGTAAATCCAGAACCAGAGACCTGGTGGATGTGGCCACTGCAGTGAGCAATGCAGTCAAATCTCAGGTGAAGCTGCATCATCCTGTTAGCGATGATCTAGCTTTTCTTTATGGCACCATCCTCACTGATGGCAAAGATGCCTTCTCTGACGAGCCTACAGCCAACATCTGTGTATTTGCTGACGCTCAGgtgGACAGGAGCCCCACTGGATCAGGTGTGACAGCCCGCATCGCTCTGCAGTACCACAAAGGACTGATCCAACTGCACCAGACCAGGAGCTTTAAGAGCGGTACCACAGAAGCTCTATTTACAGGCAAAGCAGTACAGGAGACCACCTGTGGAGAGTTCAAAGCAGTGGTGGTCGAGGTTGCGGGTCATGCCTACTACACAGGAGCAGCCAGCTTCACTCTGGAGAACAGTGACCTCCTTAAGGATGGCTTCCTTCTCAGATGAGCTTGTGTTAATACTGAAGGCAAGACTTAATTATTTGGAGTGAATTTGTGCCAAATTTCAGTCCATTCATATGCAAATGTTTAAGCAGTGAAAATAAGTCCTAAAGATAAGATCTAAAACAACATCTGTTGATTGTAATTcacaatttatatttatttactgaatgtAATAGTAAATACATGTGAAACACTtctctaatttatttttgttttatccaATACATTGGCATGTCAAATGTCATGGAGTGCTTGCGGGTACAATTTGAGCTAGCAGTCACCGGTCATTATCTTTATAATGCCCTCTGTTTCTTATTACCGACATACATGTGACCCTGTGGATGGAGGAGTGTTAGATGTcttcagaaaataaaactgacaagattcaacctcactcacaggaCAACACCTCAGAATTTACACAAATATGGGTGTTCCCAAGCAGACCTCTGAGataacactttatgatcaattCACATACTGttatcctatgacttttggtatgtcaatgtattaagtaaataaactggAAGTGATTTTATATGTGCAGCTTTGTGTAACCTGTAGACAAAAATcagcaaaacctttttttagcAGAGATGTCCATACAGGTGCTATTTCACATTTCTTCTGTGATCATAACTATTGGGTCCAGTTCATTTGATCTATATTTCATTTGccttaataatgaataaaattcagtttaaaaata

Function

symbol description
l3hypdh Predicted to enable trans-L-3-hydroxyproline dehydratase activity.

NR:

description
trans-3-hydroxy-L-proline dehydratase isoform X2

GO: NA

KEGG:

id description
K18384 L3HYPDH; trans-L-3-hydroxyproline dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238741.3 False 1872 mRNA 0.44 6 61697476 61704828
XM_007238742.3 False 1841 mRNA 0.44 6 61693955 61704828
XM_022664062.1 True 1893 mRNA 0.43 6 61694068 61704828

Neighbor

gene id symbol gene type direction distance location
trnad-guc NA coding upstream 671 61693213 ~ 61693284 (+)
LOC103031412 NA coding upstream 530357 60994927 ~ 61163598 (+)
brf1 brf1,brf1b,LOC107701485,LOC107718407,LOC107683968 coding upstream 900125 60703082 ~ 60793830 (+)
ppp1r13b ppp1r13bb,LOC108434983 coding upstream 1094589 60532742 ~ 60599366 (+)
rd3l rd3l coding upstream 1202990 60485903 ~ 60490965 (+)
LOC103031223 NA coding downstream 245643 61950471 ~ 61983459 (+)
LOC103029839 psma8,LOC103029839,LOC107572146,LOC100304914,LOC107723426 coding downstream 279811 61984639 ~ 61990664 (+)
LOC103033766 LOC103033766,LOC108416260 coding downstream 1086920 62791748 ~ 62793588 (+)
LOC103034413 NA coding downstream 1164283 62869111 ~ 62885298 (+)
LOC103046101 LOC108414576,LOC108416204 coding downstream 1184040 62888868 ~ 62907516 (+)
G29921 NA non-coding upstream 310121 61367274 ~ 61383834 (+)
G29916 jag2,jag2b,LOC106571712,LOC107718403 non-coding upstream 384112 61307219 ~ 61309843 (+)
G29825 NA non-coding upstream 763378 60929122 ~ 60930577 (+)
G29812 NA non-coding upstream 866015 60827737 ~ 60827940 (+)
G29775 xrcc3 non-coding upstream 991832 60700345 ~ 60702123 (+)
G29972 NA non-coding downstream 197935 61902763 ~ 61902969 (+)
G29974 NA non-coding downstream 201755 61906583 ~ 61907066 (+)
G29963 NA non-coding downstream 203875 61908703 ~ 61917624 (+)
G29976 NA non-coding downstream 208236 61913064 ~ 61915152 (+)
G29977 NA non-coding downstream 232836 61937664 ~ 61937976 (+)
c3h14orf2 NA other upstream 1168904 60520342 ~ 60525051 (+)
nme6 nme6 other upstream 2095623 59586709 ~ 59598332 (+)
atraid atraid other upstream 2134193 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 2465115 59221266 ~ 59228840 (+)
G29382 NA other upstream 2472919 59220532 ~ 59221036 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 221252 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 1116915 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 1221190 62926018 ~ 62931133 (+)
G30362 NA other downstream 1630906 63335734 ~ 63345693 (+)
kit kit other downstream 2526416 64231244 ~ 64269695 (+)

Expression


Co-expression Network