itpa (itpa)


Basic Information

Item Value
gene id itpa
gene name itpa
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65986525 ~ 65989450 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239520.3
TGTCGCTCGGCGGGCTGCTGTACCGGTCCGGCGGGGTGACGGGACGTGGAGGAAAGCATGGCAGTGCCGGCCGGGAGATCCGTGGTGTTTGTGACTGGAAACGCCAAGAAACTCGAGGAGGTTATCCAGATCCTTGGGGACAAATTTCCCTACAAACTTATTTCTAAGAAGATtgattTACCTGAATACCAAGGGGAACCAGATGAAATCTCAATACAGAAGTGTCAGGAGGCAGCAAGACAGGTAGATGGGCCGGTGATCGTGGAGGACACCTGCCTGTGTTTCAGGGCACTGGGAGGGCTACCAGGGCCATACatTAAATGGTTTTTGGATAAACTGAAGCCTGAAGGCTTGTATAAGCTCCTGGCAGGTTTTGAGGACAAATCTGCTTGGGCTCTATGCACATTTGCTTTTTGTGCTGGCAAAAAAGAACCTGTTCAGCTCTTTAGAGGAATCACTGAGGGCCACATTGTAGAGCCCAGGGGACCAAGGGACTTTGGGTGGGATCCCTGTTTCCAACCAGAGGGATATGATAAAACATATGCTGAGCTCCCAAAGGAAGTGAAGAACAAAATCTCCCACCGATACCGTGCGCTGGCAGCCATGTCTGAACACTTCTCCAGCCTGAACGGTGAACCAGCAGACAAACGGCCCAAACAGGATGACTGAAAGTCTGTTAGTCATTAATCTGTCTATTTAATGTTTCAGCATTTTGTCAGCTGGATGCACTACGATAGTTAATAAATATGCTGTTTGTAAACGGTTTCAACACTTAATCCATCCGATGacttttataataaaacatattgtgtAACATATTA

Function

symbol description
itpa Predicted to enable nucleoside-triphosphate diphosphatase activity. Predicted to be involved in nucleoside triphosphate catabolic process. Predicted to act upstream of or within nucleotide metabolic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in several diseases, including anemia (multiple); developmental and epileptic encephalopathy 35; hepatitis C; rheumatoid arthritis; and thrombocytopenia. Orthologous to human ITPA (inosine triphosphatase).

NR:

description
inosine triphosphate pyrophosphatase

GO:

id name namespace
GO:0009117 nucleotide metabolic process biological_process
GO:0009204 deoxyribonucleoside triphosphate catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0047429 nucleoside-triphosphate diphosphatase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K01519 ITPA; inosine triphosphate pyrophosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239520.3 True 821 mRNA 0.47 8 65986525 65989450

Neighbor

gene id symbol gene type direction distance location
vamp4 vamp4 coding downstream 21240 65947634 ~ 65965285 (-)
myoc myoc coding downstream 45427 65931323 ~ 65941098 (-)
LOC103026271 prdx6,LOC107712864 coding downstream 139345 65838880 ~ 65847180 (-)
jun jun coding downstream 377751 65606592 ~ 65608774 (-)
LOC103027150 LOC108415562 coding downstream 384986 65598312 ~ 65601539 (-)
nt5e nt5e,LOC107562347,LOC107660511,LOC107680304,LOC107554926 coding upstream 402187 66391637 ~ 66430046 (-)
mei4 NA coding upstream 558540 66547990 ~ 66674798 (-)
senp6 senp6 coding upstream 1064215 67053665 ~ 67079442 (-)
LOC103025634 NA coding upstream 1096984 67086434 ~ 67088151 (-)
LOC103026240 LOC103026240,LOC108427476,LOC105895132,LOC108274573 coding upstream 1138719 67128169 ~ 67151426 (-)
G31073 prrc2c,LOC107697494 non-coding downstream 61828 65924231 ~ 65924697 (-)
G31070 NA non-coding downstream 63158 65918392 ~ 65923367 (-)
G31053 NA non-coding downstream 100358 65885468 ~ 65886167 (-)
G31054 NA non-coding downstream 102912 65883267 ~ 65883613 (-)
G31052 NA non-coding downstream 105818 65878096 ~ 65880707 (-)
G31102 NA non-coding upstream 15443 66004893 ~ 66005868 (-)
G31108 NA non-coding upstream 34765 66024215 ~ 66069347 (-)
G31109 NA non-coding upstream 36600 66026050 ~ 66038372 (-)
G31118 NA non-coding upstream 83883 66073333 ~ 66076356 (-)
G31120 NA non-coding upstream 90494 66079944 ~ 66080258 (-)
trnad-guc_8 NA other downstream 888852 65097602 ~ 65097673 (-)
trnad-guc_7 NA other downstream 893376 65093078 ~ 65093149 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other downstream 1187349 64774684 ~ 64799176 (-)
scfd2 scfd2 other downstream 2222852 63528281 ~ 63763673 (-)
usp46 usp46 other downstream 2501504 63433792 ~ 63485021 (-)
LOC103031958 myo6 other upstream 873015 66862465 ~ 67044318 (-)
G31424 NA other upstream 1434422 67423872 ~ 67432424 (-)
G31437 NA other upstream 1514299 67503749 ~ 67528337 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other upstream 1866156 67855606 ~ 67885433 (-)
LOC103046133 LOC108439589 other upstream 1943110 67932560 ~ 67940713 (-)

Expression


Co-expression Network