LOC103032944 (tmed5,LOC108415774,LOC107733818,LOC108258151,LOC105910820,LOC107581519)


Basic Information

Item Value
gene id LOC103032944
gene name tmed5,LOC108415774,LOC107733818,LOC108258151,LOC105910820,LOC107581519
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 71180928 ~ 71189975 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239522.3
gTTTTGGGGGGGAGCTGTTGGGAGAAGTTTGTGGAGGAGAGCGGTGGTTTGTGAAAGTTGTGCTCGGCTGAAGCGGGAGGTTTAGGGGGAGATCTGGTGGTGTTGGTGTGAGCGCCAGGGATCTGCtgtaggttagttagttagattagttagttatttagttaataaaggttaaatgatgtgtgtgtgtgatgagtcTGTGCTGCGGGCGCTGCTGTTGCTGGTGTCGGTGTGCGTGTCTCTGGCCGGagctttctctcagtctctggACAGCGACTTCACCTTCACTCTCCCCCCGGGACACAAAGAGTGCTTCTTCCAGACCATGAGGAAAGACGCCTCCCTGGAAATCGAGTATCAGGTTCTTGATGGGGCTGGTCTGGATGTGGATTTCTACTTGTCTTCCCCCAGTGGTCATGTGTTAGTGTCTGATTTCAGAAAGTCAGATGGAGTTCATACAGTGGAGACAGAAGAGGGGGACTACATGTTCTGCTTTGATAATACATTCAGCACTGTATCTGAAAAGATCATCTTCTTTGAGCTGATTTTGGACAATATGGATGATGGGCAAGACCCAGAGGACTGGAAAGAATTTGTGCAAGGAGCTGACCTGCTGGATATGAAGTTGGAGGACATCATGGACACTATAAACAGTGTGAAGGCACGCTTGGGAAAGAGTCTTCAGATTCAGACAGTGCTGAGAGCCTTTGAGGCTCGTGACCGCAATCTGCAGGAGAGCAACTATGAGCGTGTGAACGTCTGGTCCTGCACCAACGTCGTGCTGATGGTGGTGGTATCCTGCATCCAGGTCTACCTTCTGCGCAGCCTGTTTGACGACAAGAGGAAAACACGCACATAGCCCACGGGCTTCTTCTGTACTAACctctgggagaaaaaaaaatacccttGTTTGGGACTGAAGATGGACACagttctctctcccctctctctctgtagaccCTTTACTTTTCCACTTCCTGTCTACTTTTATTCAATGAAGACAATCAATTTCTACTCTAGCTGAGCCAAGAAACAGTCTAGGATGTTtctcagccaatgaaaaaagagATAAGCTGCTATTGCGAGTTCACAAGAAGCAGGATTTCTGAGGGTTCTTTTATTTAACATGAGCAAAGAATCAATGGACTGATACTTTTGCAGTTTCTTATAATACCCTTTTTATACATGCCTAAGTTTTGTTAACCCATTATCTCTGCCTCTAACTGTTGAAACTATGACAAGCACTGACACATAATGACATCTTTTTAGAGCAGCATGTTAAACATGGTATATGGAGAATGTGAAGTAAAGTGTGggaaaaatgtttcatgttgaGAAAATAATGGTCTGGTAAACGGTTAAAAGAACCAGTGAAGATGAACTGTGCTTACCAATATCTGCTGTTAACGCTTTAATTATAGGGATGGCTGACTAAGACACACATtctatgttcagactgcaggcaaacTGGATTTTTGAGATCTGattcacacttttatttgcaaGTTATCAGGTCAGATTTGTGTGTCAGGATGTCACAAACGGATCTGCATGGGTTTCTGTTGTAACGAGGGAGGTGTCCGTAACTTATACTAACCTTTGGAACTTTTCTTGGACCTCCCGCACTTTTGTCACTCTAAATTTGATATAATGGATAACCAGAAATCAATCtgaatacaatctagatatgccaaaagtcagaCTTGGACtagcagtctgaacacagccacAGACATGCATGCTGCTTTGATTAACCAGACACGGGTTAAAACATGTTGTAAGATCTTGTCTAACTAGCAGATAAAATGCTACTACTTAGAAACTACCAGCTGTGCCAGTTGCCCTCCTTTGGGGATTTAGTAATAAGACCGTATGGTGCGCTGCTTTTGGCTCTGGTTCAACAGGGAGGAAAGGGAAGGAGCTTTTTGCCTCTATAAATCACCATGGGCACAAGCGCCAGAATACTTGACCTACAAGCAGTTTCTCTAGCATTGCTGACAGCAGCTCCAATTACAGTAGCCTGGCAGGctagagagcagagcagaggagAGGGAGTGAGCCAGGTGTTGTAAGCGCATCTTGAAGTGATTTATTACAGCGTTCTTCACCCTTTgtatttgtggattttttttttttttttttttttttttttttttggtgtgccCATGTGTGCTCGTATGTGCCCTAGTGAAGTATAACGTTACTGCTATGAGATTTTTCGACCCTGGATGAGAAGTGGTGGAGAAATTGATGCGTCTCACTGTAGGACACATTTAGATCCCATTACAACATCATCAAATGAATAATAGAGAgatatttgctttttaaaaatcagggttagaTTTGACAGTTTTAATAGATATTTGATGATCTAAATGAGCACAATGTTTAGGTCATTCTGGGCTGTTGCCATAgaaataccatttttttttaaactgcagttttaaccttaaacaaatacatttttcaagttCTAATATGAAGGGTTGAAAAtaagtttgtttaacacatctTTATCTTTACATTCTAAAGTCTAACTTTATAAGAAACCTGGAATTTGATTTTCACATACTGGGAAAGCTTCATTTGCCTCAATTTCTAATGGTATATAGAACCATCTACAGTATATTTCCCACCAATGTGAAGGACCTGTTAATTACCTAAATTGTTCTGCAGCGTGTGATGTTTGTATATAGAACCACTGCCTTTACTAAAGAACCATTGAACAACCCTTGTTTTAAAGAGTGTAGTTCTCCACggatgttttattgtgtttcagGGTTTTATTCCAACAGGTAaagacattttaatttttttttcattgttctgGAAAGGTTTAAAGGCTATTTAACAGCATCATTAGTCCCACATTGCCACCTTCTGGAGGTCTTCAGGAAGAGCTTCTTAAACACTACATAGCATAGAAGTATTtcagttgtttgttttttaaaaagtattacttaaataaaatgttgtgaTTCATGAGATTATATGCTTTATGTTCACCAGCAGTAACATAAACAATACATTGCTCAATTATTTTACATAACTACATCAGAGAAATGCACTGGAACAGTCCATCCCCTGCATATGTGccaattgtttatttttgttttccattCGGAACTTGTGCAAATAATGTTTGGTCGCTGTATTGAAACCCATAAAGGTTTATTTATACTA

Function

symbol description
tmed5 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human TMED5 (transmembrane p24 trafficking protein 5).

NR:

description
PREDICTED: transmembrane emp24 domain-containing protein 5-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14825 TMED5, ERP2, ERP4; p24 family protein gamma-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239522.3 True 3183 mRNA 0.40 4 71180928 71189975

Neighbor

gene id symbol gene type direction distance location
pigc pigc,LOC107581520,LOC107697628,LOC107712841,LOC107597814 coding downstream 3722 71174229 ~ 71177206 (-)
ccnk ccnk,LOC107560198,LOC107555300,LOC107678663 coding downstream 75109 71099602 ~ 71105819 (-)
trnat-ugu_81 NA coding downstream 84225 71096631 ~ 71096703 (-)
LOC103038639 ism2 coding downstream 93971 71077110 ~ 71086957 (-)
snw1 snw1,LOC107681047,LOC106608236 coding downstream 119968 71054445 ~ 71060960 (-)
prkaa2 prkaa2,LOC107716554 coding upstream 823280 72013255 ~ 72031640 (-)
bloc1s2 bloc1s2,LOC107697361,LOC107716556,LOC107581516 coding upstream 1208816 72398791 ~ 72402415 (-)
pcsk9 pcsk9 coding upstream 1308747 72498722 ~ 72518295 (-)
bsnd NA coding upstream 1332690 72522665 ~ 72527600 (-)
lexm NA coding upstream 1381504 72571479 ~ 72579512 (-)
G32346 NA non-coding downstream 17864 71161302 ~ 71163064 (-)
G32344 NA non-coding downstream 87715 71090501 ~ 71093213 (-)
G32326 NA non-coding downstream 151642 71026503 ~ 71029286 (-)
G32327 NA non-coding downstream 152047 71025689 ~ 71028881 (-)
G32316 NA non-coding downstream 207371 70965016 ~ 70973557 (-)
G32375 NA non-coding upstream 64365 71254340 ~ 71257919 (-)
G32386 NA non-coding upstream 71020 71260995 ~ 71289235 (-)
G32389 NA non-coding upstream 89645 71279620 ~ 71280405 (-)
G32524 NA non-coding upstream 891739 72081714 ~ 72084284 (-)
G32536 NA non-coding upstream 959608 72149583 ~ 72149787 (-)
G32364 NA other downstream 38590 71138486 ~ 71142338 (-)
G32343 NA other downstream 91467 71088875 ~ 71089461 (-)
LOC103033556 LOC108410406 other downstream 137746 70917981 ~ 71043182 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 2019024 69145308 ~ 69161904 (-)
fam84a fam84a other downstream 2351908 68825989 ~ 68829020 (-)
G32492 NA other upstream 780529 71970504 ~ 71982053 (-)
G32557 NA other upstream 1051555 72241530 ~ 72242270 (-)
G32611 NA other upstream 1337808 72527783 ~ 72542447 (-)
G32714 NA other upstream 1507698 72697673 ~ 72698010 (-)
pla2g7 pla2g7,LOC108440964,LOC107553425,LOC107696191 other upstream 1614018 72803993 ~ 72813530 (-)

Expression


Co-expression Network