LOC103046744


Basic Information

Item Value
gene id LOC103046744
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67973225 ~ 67981928 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240737.3
agtgagtttatggagttttaaacatgGCTCAACCCCCACCTGTGTGTGTTAATGCTACCGGTGCTGGCGCCTGATAATGAAACTGagtgtccgaattcactccTGTGTACCCCTATGTAGTGCGACACTTTTAAGGGAGTAGGGAGCCAGTTTGGTCACAGCCCACAGCCCCCCCTTCACTGAGCTCtctctcgcgggctccctctagcgggcCTCAATAATGTTTTGATAGAGGGGGGCTCTGACTGTTTCATAGCAACGCGGGTAACAACAGTGAATTCAGCCCAACTCTGTGAAACTCACCTGTCCTCTCCCTCATTTCCTCTTTTCTTCTGCTCCGCTGAGTTACAGGGGAGATGTCACGGGCGGGCCCGGGCGAGCTGAGCCCCGCTGTGGAGTCCGACAGTCCGGAGGAGCGGATAGCGGCGCGCCGCCTCCGGATAGCCGCGCGGACCGAGGCCAGGACCCGACTGGAGCTCGGGGAAGAGGCTCAGGAGCAGGAGGAGAACACAGAGGAGCCCCGGACCAGCCAGAAACAAGTGGATCAGAGTGAGAAGCGTATGATTAAACTGCAAACTGATGGCACAGAGTTAGTGACCAACATCTTGGTGGCAGCAGATGCCAGAGAGACAAAGAGGAGAGCACAGCTAGCGGAAGCACGTACATTAAGAAATGAAAAGTTGGAGAACGAGGCAAAATCCAGCCTTGAGAAGTTCGAGGAGGTCACTCAAAATTGGCCTGTGGCCAAAGCAAAGGAAATTCCTCAGGATCTGAGAGATGCTCTGAAAAGCCAGCAGCAGCTCTGCATGCTGATCACTGAAGACAAGAATAAACTCATCAATGAACTGCAGCACGAACTAAAATCAAGTGATGACCGTTATGTGAAAGAGCTGAAAAAGCAGGCAGAAGACGTGGATCTCATGAGAGAGAAAATGCAAGAGCAGATGACGTCTCTGATGAAGTTGTATAGACAAGAGCTGGATCTGATCGAGAATTCATTTGATGATGAACGAAAGACTCTGCTCACAAGCAACTTGAAAAAGTGGGAGCAGCAGAGGAAAGAGCGGAGCGACAGAGAGCTGGAGCACCTACTGCAGAGGATTAAACAGAAGGAGGAGAATGAGGTTCTGCTGCATCGACTAAGAGTTGCAAATATAAAGGAGTACAACATGATGAAACTCAATCTAGAGACTCAAAGCGAGatTTTACAGCAGAACATTCAAAAGACAAAGGCTACCAACCAGCTCAATCAAGAGAAATTAGAATACAGTCGCCATGTGATTACACATCGCAAGATGGAGACCATCCACATCGAGTCCCTGCAGAGAAAAAGGATCCTAAGATTACAGGATAGTCTCAAAAACCTGAAGGTAAAGTGTGCCAGTCAGGAGAAGCAGGCTCAGGAAGAAAACCAGTCGCTGACTGATGGCTACAAGCGCTCCATGCTGGAGTACAAAGACATGCAGAAGCACTTAAGacACTTTGCAGCAGTTGATGCCGAGCGTTTTGAGGAGATCTGGCTGATGAATGAAAATGAGGCCAAAGCTCTGGTGCACAAAGTTTTAGAGACAGACCGGGTGATCTATGAACAGTTTTTGGGTCTGGCATGGGCTCCCCCTCACGTGCCGTTTATGGAGAACTCAGGCCCCATCCAGCCCCAGCATCAGGCCAAGAGGACAGCACAGCAGTTTGCTATGCAAGCCCTTGGAGAAgtggaggaaaaaagagagatggaaGGAGAAAGCAGCACCGCAGAGGTCGCAGGACTGGACCGAAGGACAGTAAAGaaactgctggagctgctgtgtGATGAGACGGGCTTTTTGATAGAGAGCAAGCTTCTGAAGCTGCTCTCACCTCTGGAGAAAGATCCGCAGTCTTTTATAAAGCTACACTTAATCTTTTCTGCATTGGGGATTGAGAATGAAGAGGATGTTTATAAAATGGCAGAGTTCTTTGAGAAATATAAGCAGCAGCAGAAGGATCAGCCAGAGGAGGGTATTTCTGTCAGTAATGAGAATGAGCTGGTGCGAGAGATGGACTCTGAACTCGTCCATCCTAATCATGTAGTAAAGGCTCTCCATGCcttcacagctcaatactgcAGGCCCAGAGATCTCCAGTCCCAGAAGCAGAGCAGTGTGCTCTCACTGGAGGAGCGAGATGACTCTGAGGACGCTGCGTACTGGGAGAGCATGGCCAACGTCATCCCTGAGTCCAAACTCAAAGTATGGAATGCTCTGGAGGATGCTCTCAGTAAATATCACACTGTGCTGACTGAGAGATCCAAGATTCTGATTGATACCCACcatcttaaacagcagaatgcagAGCTCACGGCACTTCTGCACCAATACTTAAGccaaaagGGCAACACTGAACTGAAGATTCCACCCACACTGGTGATGCAGCTGACCTCAGAGTGATGCAGCCTGTCCTTCCTCagatcacaaaaaaatattaaactccaGTATTTGTGCATAAATGAATTATCACTTTAACTATCAAGTTCTCTGTATATGTTTGAAAacagcaataaataaatgtgagcTTGAATTTCA

Function

GO:

id name namespace
GO:0070286 axonemal dynein complex assembly biological_process
GO:0071973 bacterial-type flagellum-dependent cell motility biological_process
GO:0060285 cilium-dependent cell motility biological_process
GO:0005930 axoneme cellular_component

KEGG:

id description
K19754 DRC1; dynein regulatry complex protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240737.3 True 2561 mRNA 0.49 16 67973225 67981928

Neighbor

gene id symbol gene type direction distance location
LOC103046427 LOC108439583 coding downstream 867 67968136 ~ 67972358 (-)
LOC103045211 NA coding downstream 119452 67852557 ~ 67853773 (-)
trnat-agu_1 NA coding downstream 314574 67658579 ~ 67658651 (-)
trnai-aau_2 NA coding downstream 314972 67658181 ~ 67658253 (-)
trnai-aau_1 NA coding downstream 315527 67657626 ~ 67657698 (-)
mycn LOC108439586 coding upstream 241896 68223824 ~ 68229829 (-)
ddx1 ddx1,LOC107726609 coding upstream 357897 68339825 ~ 68351833 (-)
scml4 scml4,LOC107726459,LOC107679489,LOC107726622,LOC107601197 coding upstream 1114326 69096254 ~ 69140809 (-)
LOC111191181 NA coding upstream 1185872 69167800 ~ 69172924 (-)
ostm1 ostm1 coding upstream 1198297 69180225 ~ 69187900 (-)
G31573 NA non-coding downstream 30072 67942909 ~ 67943153 (-)
G31572 NA non-coding downstream 30518 67942497 ~ 67942707 (-)
G31564 LOC108439581,LOC108256302,LOC106571171 non-coding downstream 52871 67915459 ~ 67920354 (-)
G31523 hmcn1,LOC107599116 non-coding downstream 84198 67843284 ~ 67889027 (-)
G31546 hmcn1,LOC106560561 non-coding downstream 138177 67833423 ~ 67835048 (-)
G31598 erh,ERH,LOC107580641,LOC105904210,LOC106607637,LOC100699790 non-coding upstream 38159 68020087 ~ 68022887 (-)
G31616 NA non-coding upstream 47550 68029478 ~ 68030990 (-)
G31630 NA non-coding upstream 314936 68296864 ~ 68297068 (-)
G31686 NA non-coding upstream 804472 68786400 ~ 68787002 (-)
G31782 NA non-coding upstream 1076826 69058754 ~ 69059080 (-)
LOC103046133 LOC108439589 other downstream 32512 67932560 ~ 67940713 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other downstream 87792 67855606 ~ 67885433 (-)
G31437 NA other downstream 444888 67503749 ~ 67528337 (-)
G31424 NA other downstream 540801 67423872 ~ 67432424 (-)
LOC103031958 myo6 other downstream 928907 66862465 ~ 67044318 (-)
G31622 NA other upstream 109292 68091220 ~ 68091581 (-)
fam84a fam84a other upstream 844061 68825989 ~ 68829020 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other upstream 1163380 69145308 ~ 69161904 (-)
LOC103033556 LOC108410406 other upstream 2936053 70917981 ~ 71043182 (-)
G32343 NA other upstream 3106947 71088875 ~ 71089461 (-)

Expression


Co-expression Network