col10a1 (col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900)


Basic Information

Item Value
gene id col10a1
gene name col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38344389 ~ 38350324 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240826.3
GAGCTGTGAACAGTAGCAGCCTCGCAGACTGACTCCTCACGCACACTCACACGGATATACAGCCAGGCCGGGACCGCCCGACCTCACCACTTTCAGGAGCTCCAGCCTGCGGgTTTAGCTTCAGAAAATGGACCTCCAAGTAACAAGTGTTCTACTTCTCCTCGTGGCTTTGGTCGGGGCAACACCTGATAGATACTACCATGTGAAGAAACAGCCCTATCCAACAAAGAGCCATGCTGTTGCAGGTACACCTGGCATCCCAGGTTCACCTGGTGATCCTGGCCCCCAAGGTCCACCTGGCCCCCCAGCCCCAGGAGCAAGTGGAATGGGACACCCAGGACCAGCGGGCCCACCCGGACCACCCGGACCTTCTGGTTATTCTTCACCTGGAAAGCCTGGAAACCCAGGTGCTCCTGGAAAACCAGGTGCTAATGGAATGCCAGGAGATAGAGGAATTCCCGGAGCTGCAGGGCCACAAGGAGCAAGAGGAGCACCAGGATCTCCAGGCAGCCCAGGTCCTGCCGGCTTCTCTGCTCCTGGAAAGCCAGGACCACATGGACTTCCAGGTGCAATGGGGCCCAGAGGAGAGCCCGGACAGAAAGGACTCCCAGGTATTCCTGGCGCACACGGCCTTAAAGGAGAGCCAGGTCACGGTATCCCAGGAAGTCCTGGTGGCCCTGGTCCAATGGGTCCTGTGGGCCAGCCCGGTCAGCCTGGTCAACCAGGAATCGGAAAGCCCGGTGCAACTGGATTCCCTGGGGAGCCTGGAAAGCCAGGTATGCCAGGTAGAGATGGGTCTCCAGGTCCCGTGGGTCAGCCTGGGCTGAAAGGGCACACAGGAGCTCCAGGCATCGGTGCACCTGGTAAGCCAGGTCAGAATGGATCCCCAGGTATGCCCGGTCCAGTAGGAGCCAAAGGTCCTCAGGGTCCAGCTGGACAGCCCGGAGCTCCTGGTCTGCCAGGTATTGGTAAGACAGGAGCACCAGGAATGCCAGGAGATAGAGGTGCACCTGGTTCTTCAGGAACAACAGGACAGAAGGGAGAGCCAGGCCCAACAGGTTTTACAGGTCAGCCAGGTGCTATTGGACCTGTCGGTCAAGCTGGTCCTCAGGGTGCTAGGGGATTCCAGGGTGAGGCAGGTCCAGCAGGGCCTAAAGGTGATCCTGGTATGGTTGGGGCACCTGGTCCAAGAGGGTCAAAGGGAGAGCAAGGAGCACAAGGCTACTCAGGAAAGCCAGGAATCCCAGGGGCAGCAGGCCCACCAGGTGCTACTGGTCCACTGGGACACCCGGGTCCTAAGGGTGAGGCAGGTTTTACAGGTGCACCTGATCCGGGAGCAAGTGGCCCTCCAGGTATTAAGGGGCACCCAGGGCCACAAGGTATGCCAGGTGCCAGGGGAGAAAATGGTATCCCTGGAGCAAGAGGACAAAATGGGCCAGTGGGGCCTTCTGGACCCCAAGGTCCAAAAGGTCATCCCGGTCTTCCAGGTCCTCCCGGCCCTGCAGGGCTCACAGCCAAAGGAATTAGTGGCCCACAGGGTCCTCCAGGAATACCTGGTGCCAGAGGTCATGATGGTCTCCCAGGCCCTGCTGGACCTCCTGGTCCCCCTGGTCCACCAGGTGAGATTGTTTACCATCACGAGAAGAGCATGCCCATTAAATCTCACGAGTATGAGATCATGCCTCTCAGCCACGAGCTGGTGAAGGCCCCAGTGTCAGCCTTTACGGCTCTACTGACCAGCGCATACCCTAGTGCAGGTGCTCCAATTGTCTTTAGCCAGACTGTATACAATGGAGAGAACCACTATGATCCTCAGTCAGGTGTGTTTACTTGCCAGATTCCAGGACTCTACTACTTTGCCTTCCACATGCATGTCAATGGTGCTAACGCATTGGTGGCACTTTACAAAAACAGCGAGCCAGTTCTGTTTTCCTACGATGAGTACAACAAAGGTTTCCTGGATCAGTTGTCTGGCAGTGCTGTCCTTTTGCTACACGCTGGCGATAGGGTGTTCGTTCAGGTTCCAGATGAGCAGTCCAATGGCATCTACGCTGATGACAATGTCCACTGTTCTTTCTCTGGATTCTTGATTGCCTCAACGTGATCAAGACGCTACATAAAACCTCAAACGTTTTAAGTAAACTTGATGTTTCTCTAAAAAAGCCCCCCACAGCCATAAGGCATTTGCAATTAAGGGAAAAGGAACTACTTAATAAACTTAGTGTGTAAGTAGATTGAGATTGAGTCTGGGTAACAACCAATTGTACATTCagtgaaagaagaaaaacactgaaaccaCTGACCACGGTAGAAAGACTAGAACACATCCCTaagaacacatttttaattctctgtctaaaataaaaaaaaaaaacaacattatgtgtTTGTCTACAAACCGAGCTGGTGCTAATTCATACTATAAAGTGGTGCTCTTCTATGGCCTGTAAATTATGCTGAGATGATCTGCTATTAAGTATGTTTGATGGAGCTCCACTACTGAAGCTCTGTATCACTTTACCAAAACAAATAAGGCTTTTCATTTGAAGTTTCTGTTTCTGGAACACTAAACtgtatgtgtataaaaaaaaaagatatggaTGAAAAACTGGATACATTTATTATGCAACTCTGTTACTGCACAAGGTGTCTCATGCTATGCACATCATTGTGATCAACACAAATAAAAGTTTTAGTGCCA

Function

symbol description
col10a1b Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Is expressed in ceratobranchial 5 tooth; dental papilla; and regenerating fin. Human ortholog(s) of this gene implicated in Schmid metaphyseal chondrodysplasia and osteochondrodysplasia. Orthologous to human COL10A1 (collagen type X alpha 1 chain).
col10a1 An extracellular matrix structural constituent conferring tensile strength. Predicted to be involved in extracellular matrix organization. Located in collagen-containing extracellular matrix. Implicated in Schmid metaphyseal chondrodysplasia and osteochondrodysplasia.

NR:

description
PREDICTED: collagen alpha-1(X) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240826.3 True 2701 mRNA 0.52 5 38344389 38350324

Neighbor

gene id symbol gene type direction distance location
LOC103045011 LOC103045011,LOC108414810 coding upstream 355456 37984712 ~ 37988933 (+)
LOC103046026 cx27.5,LOC108414812,LOC107597344,LOC107687661,LOC107680359,LOC107592389,LOC107732608 coding upstream 369130 37969234 ~ 37975259 (+)
LOC103021778 NA coding upstream 706761 37633781 ~ 37637628 (+)
igbp1 igbp1 coding upstream 826522 37510934 ~ 37517867 (+)
LOC103022398 LOC103022398,LOC108412744,LOC108259816 coding upstream 840436 37497889 ~ 37503953 (+)
LOC103029663 NA coding downstream 31266 38381590 ~ 38400321 (+)
hs3st5 hs3st5 coding downstream 66426 38416750 ~ 38427918 (+)
hdac2 hdac2,LOC108416127 coding downstream 78325 38428649 ~ 38438064 (+)
lama4 NA coding downstream 176254 38526578 ~ 38577159 (+)
tube1 tube1 coding downstream 229639 38579963 ~ 38606640 (+)
G24437 ufl1 non-coding upstream 85140 38256201 ~ 38259249 (+)
G24432 NA non-coding upstream 98100 38243485 ~ 38246289 (+)
G24359 NA non-coding upstream 307641 38027773 ~ 38036748 (+)
G24330 NA non-coding upstream 337693 37884467 ~ 38006696 (+)
G24340 fam76b,fa76b,LOC107680374,LOC107687655,LOC107592275,LOC106603374 non-coding upstream 400455 37938839 ~ 37943934 (+)
G24474 NA non-coding downstream 90028 38440352 ~ 38440660 (+)
G24476 NA non-coding downstream 99671 38449995 ~ 38492705 (+)
G24485 NA non-coding downstream 152903 38503227 ~ 38503518 (+)
G24531 NA non-coding downstream 231303 38581627 ~ 38582793 (+)
G24535 NA non-coding downstream 240617 38590941 ~ 38592527 (+)
G24431 NA other upstream 107348 38232593 ~ 38237041 (+)
G24390 NA other upstream 246065 38092974 ~ 38098324 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other upstream 410400 37928355 ~ 37933989 (+)
LOC111194342 NA other upstream 630007 37589106 ~ 37714382 (+)
ar ar,LOC108443198 other upstream 1885460 36249824 ~ 36458929 (+)
G24463 NA other downstream 9011 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other downstream 9136 38359460 ~ 38379336 (+)
G24534 NA other downstream 235115 38585439 ~ 38586278 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other downstream 317185 38667509 ~ 38717435 (+)
G24594 smim8 other downstream 575372 38925696 ~ 38926982 (+)

Expression


Co-expression Network