LOC103038639 (ism2)


Basic Information

Item Value
gene id LOC103038639
gene name ism2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 71077110 ~ 71086957 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241834.3
CGCACCTGGTCACATGCGAGCAAAGCTAGAGGCGCAGCAGGAGCACACGCGCCAGTGTTTGGGCACCAGGCTTCTTTACAGGAGTTTACCGGGCTTTCTGTGGAAAAACGATCACCTCTACGGGTTGGGTCTGCTTTTTTTAATCCGCGCTGGGGTGAGGAGATAGCTTCAGTTAAGTTCAAAACCTAAAAGGAGCGTGTAGGGTCTGAGCAGCATGCCTGCAGCGagcaggagagtgtgtgtgccgCTCGTCGTGTTTTTTTTCACGGTGTGTGTGGAtctggtggtggtgtgtttcCCCACTAGACAGCAGAAGAGCACGGTCCCGAGAATCAGACACAGCGCTGCTGCTCCTGAGACACATATTCGAAAAGCTTCAAGTGACATTATCCAAGGCCATTACCTACAGGAAAATCAGGTGCAGAGTGTGTTGGTTGGCTCACAGCAGCGCTGGCGGTCCCAGCATCATTCTCTAGGATTCCTACCACAGCCTGAGTCTAAAGAGGAATCTTACATATTGGATCTCAAGAAGTTTCCTGACTTGGCCAGGGCTGACATTGGCTCTCAAAACCCCAACATTCAGGTAACCATAGAAGTGGTAAACACCCCCCCAGTGGAAGTTGAGGTGGATCTGGTTAGAGAGCACAACAGTGACTGGCCCATCTCCTCCTCTTCCCCCTCCTCTGTTAATGACTGGCTCAGTGGTAAGATGTTGTTCTGGCCTCTCTTTTGGGGCTACACTGATGTGGATTCAGGTGAGGACGGAATGAGGCAGGCAGTGACGGGCATAaatgaggagaaggaggaggaagaaaaagaagaagagaaagaggaggactACACATCTGACTATGACAGTGGAGAACCCCTACCAAGCGGGCTAGGTGGGATTGATGGTGAATGGGACAGCCAGCGGAACCTGGGCTGGGACTCCACACATACCTATTATGAGAAAAAGGAATGGAGTCGCTGGACCTCTTGCTCTGTCACCTGTGGCCATGGTAATCAGACACGTTCCCGCACATGTGGAGATTTTTGCATATCCACTGAATCCCGCAGTTGTGATCTTGACCCATGCCCAGATAATTTAAACCCAATCTCAAATGTGTTCCCTTTTGAGATGGAGAATGGAACAGAACCATTTGGCACAGACATTGACAGCTGTGATAAGTGGCTTAACTGTAAAAGCAAGTTCCTCCAGCGCTACCTGCAGCAGGTCCTCATGGAATTGCCCAGCTGCCCCTGCATTTATCCCTCTGAGGTTTTCCAAGGTATGGTCACTTTGCAAGACAAGGGCCACAATCAAACATTCCACTGGAAGGACGCCAGTGACCTGAAGGAGCACTTGGACATCTATAAGCCTTCTGCGAGCAGCTGCTTACGCTCTGCTCTGTCAGCAGAGGGCACCACGCTGGCTGCCCAGCACTGCTGCTACGACAGCCAGGGCCAGCTGATCACTCGGGGCAAAGGGGCAGGCACCCCAAACCTCATCAGCACAGAATTCTCACCTGAGCTGCACTTTAAAGTGGACGTATTGCCCTGGATCCTCTGCAAGGGAGACTGGAGCCGTTTTCATGCTGTGCGCCCCCCCAATAATGACCTCCACTGCCCTGAAAACCCCCACCAGGACATTTTTCTAAATGAGCTTGAGGAGGCCAAGGAGTACTAATACAATGCACTAGTACACTGCAAAACCTGCCCTGTATGAATTTCAACTTCAGCATTCCTTCCTACTTCCACACATAAACCATCCTACAGCTGTTTTCCAACCTCTAAAATGTGCAACATGTTTTAAGTataattgtgtatttttgttttcagtgttaggATTTGTTTGACCAGCAGTCAAAAATGATACACATACAAGCACACCCAGTCTTGTAAAAAATCTGTTATGACATGTTAAGCTAGTCATTTATTTAACAAGACAAGCTACATGCAGCACATTTAATTGTTGGTCAAAGCTTTAGGCTAAGGAACATCCACCATGATCAAAcagaatttttgtttttatttttttgtaggcATGAGAAATTATTTGTTTGGGAGCTTTTCCCAAAGACAATTTGAGAAGAGAGTGATGCATAAACAGTAATACTTTGGTTCAGTTGGAAACTACTCTAATATTCATAATGCAGTTATTTTTTTCAAGTGGTAATCAATGTAGCAGAAATTGAAAAAcaggttttatataaaaaaaaaacttttacgaTGCAGTCTGGATATTCATTTTGAATTATAACTTTATTCTAAATGCTagatatcattttttattagtgtGAAGTCATGTACAGCTCTGTTGACCATTCTGAACACATTTAGAATTTCAAACGTTAAAACCTTTTcctaaaatgactttaaaagtTCTCTTTTGTGGGGGAAAAAGAGACAATAGTAATTCCAATTCCTGGTCAACTAATGTCACCAGGCTTTAATGAAGTTCCTTTCTGACAAAGAACACCAGGCTTATCCATAAAGACTTTGGGTTATTGGGATATTAGAGAGGGTAACTTTCACTGCCAACTTAGAATAGCTTAATTTGCTTATTTCTTCAGTTAAAGCCTCATTAGAAACTACAATTTAGGTAGATATGCAGgagcacaaaagaaaaaaaggttttgtgtGTGATTTGTATTCTTGTCAGTTTTTACTGTGGTTAATAAGTTATTGAATAAGGCAAGTTGCCTGGGAGCTGAATATATTGTTAAAGTGTGTGCTTCAGATAGCTTTTCAAGTACATACATATTTGCATAGACATTAAGATgatactttatttaaattatattcaaaTGAATCTGTATACTGTttgttaatgttattattgtgaagggatttttctacagtatttcttttaaatatcaGTTATGGCAAATACTTTGTATGAATTCTTCAGTACATGTTGGATGTTTGTACAGTATTTATTgtcttattttctttactttgtttaGACTTTGACTTAGATCCAGGACAGAAGGGAAATCATTTGCCTTGTATCAATTTAACAATATGTCAAAGggggaaggagaaaaaaaaaaataatcgcaCAGTATTTTAATGCTCTGGAAGCTGAAATCTGTGTTGCAATTTGTACAGAGATGAGTAAAAAAAGAACACGTTCTTTTGCCTCACATGATGTGTCGATCTTGACATCCCAATAGTTAAAGCTTACTCAAGCTGTCTTTACTAGCATAAAACTACCAGACTCCATAAATTCCCCAAACTGCAGTTTGGCCTGGCAATCAGAATGCCTATATCATACATTGCTATATCTTCGACAGGGCAAAATTAACTtgcaaatgtaaatgttttgttcctttttttcctcAGCCTTAACAAGTAACATCCAGGGACAGTCGACCGATCTGCCTGGCAAGAAAACTTTCACATGTGTGGCAATCTGGTTTCAATTGGAGAACCCAGGCCACAGTTTCATTCTGGGATGCCTAGGAATGAGCAAAACATTCCacttttacttttgtttattcTTCTACAAACCTGCTATATCTTCTCcatcagaaacaaacaaagctgaagGATCAACGGGCTCtttttattcaaaagcagtcaGTGAATAGCTGACTATATGGACTATTATATATACTATCTGAATATGGAGCTAAAagtcacatacacacaaacactgtgtgACACCCACCGAGTCACAATTTAGAGACTTTTAATCCGACTACGCCACCTAGGAGTGGTGGAGTCCTAGGAACTCCAAGGTTAATAGAGTAAAATTAATTACTATTTAGCACAACACAGGTTCCTTGTATTCTGGGGGTGAGCACCCGAATAACCACTTCACAAGCACAGTTTAAcaaaatttattaaatttaaaattaaggggacaatacaaaaaaatgtaacaatttgCTCAATAACAATTTTCAACACAGGGCTAGCCCAATCACTAAAATCCCACccaaatgaccaaaaaaaactaacaataaaaatagaaataccaACTAAAGGATATAACCCAacacaagaaaaagaaataaacaaacagccaaaaataaataatgcaacacAACCCACAAAATCCTCCTTTTTTCGATAATAGTACTCCAAGTACTCTACAAGGGCTGGTGACTCTCCTGTAGGCTACCCCAGGACAGTAGCTAATTTCCCACAGTTTCCCCCATACCATAAGCGAGGCTATGCAGTCGCTCTCAATGGATCCTAGCAACCCGAGAGTAGTCAGTATAATTACAATATCGGGAATGATTACTCCAACGAATAACCAATTTATCaaacaaaagagcaaaaaaaagggaacaaattaaatctaaaccaacataaatattataatcCCTTCCCACACCATATATCCCCCTTACTAAAATGTAGATTCTGTTTAGGTACAGCAACAGTCCAATAAAATCTGTAATGGCAGCAGGAACGCGGCTCTCGCACGTGGCGGCGCGGCTCTCACACGTGGCACAGCAATCCACACTCGCTCTCCTCCACGCTGACCCCACAAGTCTCCCACAGACGAGGTAGCTGTAGCAAACAGAAAGGAGAGCAGTATCCTGGCCCACACACAAGCTACGAATCACTCTAAATCCCACAAATTATCTCAGTCAGCCACCAGCAGAAGCAAATAGTACACCCAAAGGAATATACTCACAATTAGCCCGGGAGTCGGGTAATCCAAACTCCCAGGACGTATATTCCAAGCCCGGGTGAAATCCCACAGCGGTAGCCTCGCGCTAGCTCCTCGCGCTGCCTCAGCTCCCCCGCTTCCTGCTGGCGCTGCTCGCTCCGCAGCTCCCCTGTGTAGGGCTCGTCGGCACATCATATtaacacatcatattaagctatgaAGCTTACGGCCTGGTACGGCCGGGTCCTTCACGCCCTCTCACCGCTACCGCTCGCCTACTGCGTGTCTGCCGCGCGCCGCTTCACATCCACGCCACGGATGGTTCCCGTTCCCGTGCTCCCTCTTCCATAGTGCTGCAGcgagagggtactgactgcagcctgcgggaaggcggagttggacgtccagcgtgtccagtcccacccactttg
>XM_007241836.3
CGCACCTGGTCACATGCGAGCAAAGCTAGAGGCGCAGCAGGAGCACACGCGCCAGTGTTTGGGCACCAGGCTTCTTTACAGGAGTTTACCGGGCTTTCTGTGGAAAAACGATCACCTCTACGGGTTGGGTCTGCTTTTTTTAATCCGCGCTGGGGTGAGGAGATAGCTTCAGTTAAGTTCAAAACCTAAAAGGAGCGTGTAGGGTCTGAGCAGCATGCCTGCAGCGagcaggagagtgtgtgtgccgCTCGTCGTGTTTTTTTTCACGGTGTGTGTGGAtctggtggtggtgtgtttcCCCACTAGACAGCAGAAGAGCACGGTCCCGAGAATCAGACACAGCGCTGCTGCTCCTGAGGAAAATCAGGTGCAGAGTGTGTTGGTTGGCTCACAGCAGCGCTGGCGGTCCCAGCATCATTCTCTAGGATTCCTACCACAGCCTGAGTCTAAAGAGGAATCTTACATATTGGATCTCAAGAAGTTTCCTGACTTGGCCAGGGCTGACATTGGCTCTCAAAACCCCAACATTCAGGTAACCATAGAAGTGGTAAACACCCCCCCAGTGGAAGTTGAGGTGGATCTGGTTAGAGAGCACAACAGTGACTGGCCCATCTCCTCCTCTTCCCCCTCCTCTGTTAATGACTGGCTCAGTGGTAAGATGTTGTTCTGGCCTCTCTTTTGGGGCTACACTGATGTGGATTCAGGTGAGGACGGAATGAGGCAGGCAGTGACGGGCATAaatgaggagaaggaggaggaagaaaaagaagaagagaaagaggaggactACACATCTGACTATGACAGTGGAGAACCCCTACCAAGCGGGCTAGGTGGGATTGATGGTGAATGGGACAGCCAGCGGAACCTGGGCTGGGACTCCACACATACCTATTATGAGAAAAAGGAATGGAGTCGCTGGACCTCTTGCTCTGTCACCTGTGGCCATGGTAATCAGACACGTTCCCGCACATGTGGAGATTTTTGCATATCCACTGAATCCCGCAGTTGTGATCTTGACCCATGCCCAGATAATTTAAACCCAATCTCAAATGTGTTCCCTTTTGAGATGGAGAATGGAACAGAACCATTTGGCACAGACATTGACAGCTGTGATAAGTGGCTTAACTGTAAAAGCAAGTTCCTCCAGCGCTACCTGCAGCAGGTCCTCATGGAATTGCCCAGCTGCCCCTGCATTTATCCCTCTGAGGTTTTCCAAGGTATGGTCACTTTGCAAGACAAGGGCCACAATCAAACATTCCACTGGAAGGACGCCAGTGACCTGAAGGAGCACTTGGACATCTATAAGCCTTCTGCGAGCAGCTGCTTACGCTCTGCTCTGTCAGCAGAGGGCACCACGCTGGCTGCCCAGCACTGCTGCTACGACAGCCAGGGCCAGCTGATCACTCGGGGCAAAGGGGCAGGCACCCCAAACCTCATCAGCACAGAATTCTCACCTGAGCTGCACTTTAAAGTGGACGTATTGCCCTGGATCCTCTGCAAGGGAGACTGGAGCCGTTTTCATGCTGTGCGCCCCCCCAATAATGACCTCCACTGCCCTGAAAACCCCCACCAGGACATTTTTCTAAATGAGCTTGAGGAGGCCAAGGAGTACTAATACAATGCACTAGTACACTGCAAAACCTGCCCTGTATGAATTTCAACTTCAGCATTCCTTCCTACTTCCACACATAAACCATCCTACAGCTGTTTTCCAACCTCTAAAATGTGCAACATGTTTTAAGTataattgtgtatttttgttttcagtgttaggATTTGTTTGACCAGCAGTCAAAAATGATACACATACAAGCACACCCAGTCTTGTAAAAAATCTGTTATGACATGTTAAGCTAGTCATTTATTTAACAAGACAAGCTACATGCAGCACATTTAATTGTTGGTCAAAGCTTTAGGCTAAGGAACATCCACCATGATCAAAcagaatttttgtttttatttttttgtaggcATGAGAAATTATTTGTTTGGGAGCTTTTCCCAAAGACAATTTGAGAAGAGAGTGATGCATAAACAGTAATACTTTGGTTCAGTTGGAAACTACTCTAATATTCATAATGCAGTTATTTTTTTCAAGTGGTAATCAATGTAGCAGAAATTGAAAAAcaggttttatataaaaaaaaaacttttacgaTGCAGTCTGGATATTCATTTTGAATTATAACTTTATTCTAAATGCTagatatcattttttattagtgtGAAGTCATGTACAGCTCTGTTGACCATTCTGAACACATTTAGAATTTCAAACGTTAAAACCTTTTcctaaaatgactttaaaagtTCTCTTTTGTGGGGGAAAAAGAGACAATAGTAATTCCAATTCCTGGTCAACTAATGTCACCAGGCTTTAATGAAGTTCCTTTCTGACAAAGAACACCAGGCTTATCCATAAAGACTTTGGGTTATTGGGATATTAGAGAGGGTAACTTTCACTGCCAACTTAGAATAGCTTAATTTGCTTATTTCTTCAGTTAAAGCCTCATTAGAAACTACAATTTAGGTAGATATGCAGgagcacaaaagaaaaaaaggttttgtgtGTGATTTGTATTCTTGTCAGTTTTTACTGTGGTTAATAAGTTATTGAATAAGGCAAGTTGCCTGGGAGCTGAATATATTGTTAAAGTGTGTGCTTCAGATAGCTTTTCAAGTACATACATATTTGCATAGACATTAAGATgatactttatttaaattatattcaaaTGAATCTGTATACTGTttgttaatgttattattgtgaagggatttttctacagtatttcttttaaatatcaGTTATGGCAAATACTTTGTATGAATTCTTCAGTACATGTTGGATGTTTGTACAGTATTTATTgtcttattttctttactttgtttaGACTTTGACTTAGATCCAGGACAGAAGGGAAATCATTTGCCTTGTATCAATTTAACAATATGTCAAAGggggaaggagaaaaaaaaaaataatcgcaCAGTATTTTAATGCTCTGGAAGCTGAAATCTGTGTTGCAATTTGTACAGAGATGAGTAAAAAAAGAACACGTTCTTTTGCCTCACATGATGTGTCGATCTTGACATCCCAATAGTTAAAGCTTACTCAAGCTGTCTTTACTAGCATAAAACTACCAGACTCCATAAATTCCCCAAACTGCAGTTTGGCCTGGCAATCAGAATGCCTATATCATACATTGCTATATCTTCGACAGGGCAAAATTAACTtgcaaatgtaaatgttttgttcctttttttcctcAGCCTTAACAAGTAACATCCAGGGACAGTCGACCGATCTGCCTGGCAAGAAAACTTTCACATGTGTGGCAATCTGGTTTCAATTGGAGAACCCAGGCCACAGTTTCATTCTGGGATGCCTAGGAATGAGCAAAACATTCCacttttacttttgtttattcTTCTACAAACCTGCTATATCTTCTCcatcagaaacaaacaaagctgaagGATCAACGGGCTCtttttattcaaaagcagtcaGTGAATAGCTGACTATATGGACTATTATATATACTATCTGAATATGGAGCTAAAagtcacatacacacaaacactgtgtgACACCCACCGAGTCACAATTTAGAGACTTTTAATCCGACTACGCCACCTAGGAGTGGTGGAGTCCTAGGAACTCCAAGGTTAATAGAGTAAAATTAATTACTATTTAGCACAACACAGGTTCCTTGTATTCTGGGGGTGAGCACCCGAATAACCACTTCACAAGCACAGTTTAAcaaaatttattaaatttaaaattaaggggacaatacaaaaaaatgtaacaatttgCTCAATAACAATTTTCAACACAGGGCTAGCCCAATCACTAAAATCCCACccaaatgaccaaaaaaaactaacaataaaaatagaaataccaACTAAAGGATATAACCCAacacaagaaaaagaaataaacaaacagccaaaaataaataatgcaacacAACCCACAAAATCCTCCTTTTTTCGATAATAGTACTCCAAGTACTCTACAAGGGCTGGTGACTCTCCTGTAGGCTACCCCAGGACAGTAGCTAATTTCCCACAGTTTCCCCCATACCATAAGCGAGGCTATGCAGTCGCTCTCAATGGATCCTAGCAACCCGAGAGTAGTCAGTATAATTACAATATCGGGAATGATTACTCCAACGAATAACCAATTTATCaaacaaaagagcaaaaaaaagggaacaaattaaatctaaaccaacataaatattataatcCCTTCCCACACCATATATCCCCCTTACTAAAATGTAGATTCTGTTTAGGTACAGCAACAGTCCAATAAAATCTGTAATGGCAGCAGGAACGCGGCTCTCGCACGTGGCGGCGCGGCTCTCACACGTGGCACAGCAATCCACACTCGCTCTCCTCCACGCTGACCCCACAAGTCTCCCACAGACGAGGTAGCTGTAGCAAACAGAAAGGAGAGCAGTATCCTGGCCCACACACAAGCTACGAATCACTCTAAATCCCACAAATTATCTCAGTCAGCCACCAGCAGAAGCAAATAGTACACCCAAAGGAATATACTCACAATTAGCCCGGGAGTCGGGTAATCCAAACTCCCAGGACGTATATTCCAAGCCCGGGTGAAATCCCACAGCGGTAGCCTCGCGCTAGCTCCTCGCGCTGCCTCAGCTCCCCCGCTTCCTGCTGGCGCTGCTCGCTCCGCAGCTCCCCTGTGTAGGGCTCGTCGGCACATCATATtaacacatcatattaagctatgaAGCTTACGGCCTGGTACGGCCGGGTCCTTCACGCCCTCTCACCGCTACCGCTCGCCTACTGCGTGTCTGCCGCGCGCCGCTTCACATCCACGCCACGGATGGTTCCCGTTCCCGTGCTCCCTCTTCCATAGTGCTGCAGcgagagggtactgactgcagcctgcgggaaggcggagttggacgtccagcgtgtccagtcccacccactttg

Function

symbol description
ism2 Predicted to be located in extracellular region.

NR:

description
isthmin-2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241834.3 True 5040 mRNA 0.43 6 71077110 71086957
XM_007241836.3 False 4989 mRNA 0.43 6 71077110 71086957

Neighbor

gene id symbol gene type direction distance location
snw1 snw1,LOC107681047,LOC106608236 coding downstream 16150 71054445 ~ 71060960 (-)
tshr tshr coding downstream 161460 70870863 ~ 70915650 (-)
brox brox,LOC107732498,LOC107710643,LOC107568230 coding downstream 209448 70856750 ~ 70867662 (-)
c3h8orf82 cunh8orf82,LOC103038903,LOC107704038,LOC107567028 coding downstream 433785 70640472 ~ 70643325 (-)
naprt LOC107728101,LOC107746003 coding downstream 437184 70622015 ~ 70639926 (-)
trnat-ugu_81 NA coding upstream 9674 71096631 ~ 71096703 (-)
ccnk ccnk,LOC107560198,LOC107555300,LOC107678663 coding upstream 12645 71099602 ~ 71105819 (-)
pigc pigc,LOC107581520,LOC107697628,LOC107712841,LOC107597814 coding upstream 87272 71174229 ~ 71177206 (-)
LOC103032944 tmed5,LOC108415774,LOC107733818,LOC108258151,LOC105910820,LOC107581519 coding upstream 93971 71180928 ~ 71189975 (-)
prkaa2 prkaa2,LOC107716554 coding upstream 926298 72013255 ~ 72031640 (-)
G32326 NA non-coding downstream 47824 71026503 ~ 71029286 (-)
G32327 NA non-coding downstream 48229 71025689 ~ 71028881 (-)
G32316 NA non-coding downstream 103553 70965016 ~ 70973557 (-)
G32285 NA non-coding downstream 259407 70817272 ~ 70817703 (-)
G32279 NA non-coding downstream 283246 70793302 ~ 70793864 (-)
G32344 NA non-coding upstream 3544 71090501 ~ 71093213 (-)
G32346 NA non-coding upstream 74345 71161302 ~ 71163064 (-)
G32375 NA non-coding upstream 167383 71254340 ~ 71257919 (-)
G32386 NA non-coding upstream 174038 71260995 ~ 71289235 (-)
G32389 NA non-coding upstream 192663 71279620 ~ 71280405 (-)
LOC103033556 LOC108410406 other downstream 33928 70917981 ~ 71043182 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 1915206 69145308 ~ 69161904 (-)
fam84a fam84a other downstream 2248090 68825989 ~ 68829020 (-)
G31622 NA other downstream 2985529 68091220 ~ 68091581 (-)
LOC103046133 LOC108439589 other downstream 3136397 67932560 ~ 67940713 (-)
G32343 NA other upstream 1918 71088875 ~ 71089461 (-)
G32364 NA other upstream 51529 71138486 ~ 71142338 (-)
G32492 NA other upstream 883547 71970504 ~ 71982053 (-)
G32557 NA other upstream 1154573 72241530 ~ 72242270 (-)
G32611 NA other upstream 1440826 72527783 ~ 72542447 (-)

Expression


Co-expression Network