snw1 (snw1,LOC107681047,LOC106608236)


Basic Information

Item Value
gene id snw1
gene name snw1,LOC107681047,LOC106608236
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 71054445 ~ 71060960 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241837.3
GCGAGACTTTAGCAGGGAGCTGGAGCTCGGGGGAGAAAGGTCTGCGCTGAGAGTCTCCAGTCTTGAGCTGAAGCTTTTcacaaagagagaaaacatgTCTCTGGCCAGttttttacccGCGCCCACTCAGCTGTCCCAGGACCAGCTTGAGTCAGAAGAGAGGACCAGAGCTCAGAGGTCCCAGTCCACATCTCTGATGCTCACTCGAAGAGAACCACCTCCCTATGGTTCTCGAAAAGGATGGGTTCCCCGCAGTATTGaggattttgGAGATGGTGGTGCATTCCCTGAGATCCACGTGGCTCAGTATCCACTGGAGATGGGCAGAAAAAAGAAGACATCCAATGCCCTTGCTGTACAGGTGGATGCTGAGGGCAAAATAAAGTATGATGCAATTGCTCGACAAAGCCAAGGAAAGGATAAGGTTATATTCAGTAAATACACAGATTTGCTTCCTAAAGAAGTGCTCAATGATGATGCCCCAGAGTTACAGAGACCAGATGAAGAGGCCATTAAAGAGcttACAGAGAAGACCAGAGCTGCTTTGGACAAGCAGGTTTCCCAGAAAATTGCTGCAGCAATGCCTGTACGTGCAGCAGATAAACAGGCACCAGCACAGTACATACGGTACACACCTTCTCAGCAGGGAGTAGCATTCAACTCGGGGGCCAAGCAAAGGGTCATCCGTATGGTGGAGATGCAAAAAGATCCAATGGAACCCCCACGTTTTAAAATTAATAAGAAAATTCCTCGTGGACCTCCCTCTCCTCCTGCTCCAGTTATGCACTCTCCCAGTAGAAAGATGACGGTGAAAGAACAACAGGAGTGGAAGATTCCTCCATGCATTTCCAACTGGAAGAACGCAAAGGGTTACACAATCCCACTGGATAAACGTCTTGCTGCTGATGGAAGAGGTCTTCAGACAGTTCATATTAATGAGAACTTTGCAAAGTTAGCTGAAGCTCTCTACATTGCAGATAGAAAGGCCAGAGAAGCAGTGGAGATGCGCGCCCAGGTGGAAAAGAAGATGGCacagaaggaaaaagaaaagaaggaggagaagcTTAGGGAGCTTGCGAAGATGGCGCGAGACAGAAGAGCAGGGATCAAAGGCCATGGAGAAAaagGTGGTGAGGATGGTGAAGCCAGAGAGCGTGATGAGATTCGTCATGACAGGAGgaaagagagacagcacgaTAGAAACATCTCCAGAGCAGCCCCTGATAAAAGGTCTAAACTGCAGCGGGACCAAGACCGAGACATCAGTGAACTGATTGCGCTGGGCCAGCCCAACCCCCACACCTCCAGTGAGGCTCAGTATGACCAGAGGCTGTTCAACCAGAGCAGGGGAATGGATAGTGGCTTTGCTGGAGGAGAAGATGAGACATATAATGTGTATGACCAGCCCTTTAAGAGTGGCAGAGACATGGCACAGAACATGTACAGGCCCAGCAAAAATGCAGACAAGGATATGTATGGAGATGACCTGGACACACTTATGCAGAGCAGCAGGTTTGTACCTGATAGGGAATTCTCTGGCACTGACCATGGACCTCGCAGGGATGGACCTGTCCAGTTTGAGGAGGATCCTTTCGGTCTGGATAAGTTCTTGGAGGAAGCCAAGCAACACGGTGGCTCCAAACGGCCGTCCGCTAGTGGCCGCTCTAAGGACTATGACCATGAGAAGAAGCGCAGGAAGGAGTGACCggtgcaaaaatacattttgggcTAATTTTGACTAATGTAAAACAGACCCGAGTTATGGGGCAAGCTGTGGAGAAAAAATGTTAGTGTGCTCTGTAATATATCAACAAGatattacaaataattttttaagaCCGATTTTGGTACACACAGCTACTAAACTGGAtgtaatgtgtattttactGACCTAGCTACAAGGTGCATTTGTAAAAAGTAATGGGACCCCTCCATAGTATGATTTAGGTGTTAGAGGTTTgctatttttgttcttttaaagtAATAGTGCTTCAGATACTGTTGATCACCAGTTGTCATATTGCAAAGCTATCTAATAAACACGAGTGAAAATAAGTCATGTTCTAAAACTTTGTGAATGTTGTCACAAATTGGCTTTACAGAGTTCCTGGTCTAAAGCTCTTAAATAACCCAAAGGTGAAATCAAGACGTAGAAACTttaagaggaaccaagactcaaagggggaacccatcctcctctggtcaacACTGAATAGCACAAGTATGATTAACAACCttaactgcttacatttttcagtcaggagtggaataaggtcacccaaaagcagtgtgaaagactggagtagagcatgccaagataaatgaaagctgtgattaaaaatcaaggttattccaccaaatgttgatatCTGAACTATTCCTGAGTTAAAACTTTAGGATTGTTGTTTCttaattaatatgaacttgttataTTACTTGTAATATGAactttttgcattgtttgaggtctgaaagtacTGCATCTTATTATTTTTGGCATatattttgtgcaaataaatgttgtaaatttCTA

Function

symbol description
snw1 Acts upstream of or within neural crest formation and positive regulation of BMP signaling pathway. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Is expressed in ectoderm; mesoderm; and neural plate. Human ortholog(s) of this gene implicated in breast cancer and pancreatic cancer. Orthologous to human SNW1 (SNW domain containing 1).

NR:

description
PREDICTED: SNW domain-containing protein 1-like

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0030513 positive regulation of BMP signaling pathway biological_process
GO:0014029 neural crest formation biological_process
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
K06063 SNW1, SKIIP, SKIP; SNW domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241837.3 True 2533 mRNA 0.45 14 71054445 71060960

Neighbor

gene id symbol gene type direction distance location
tshr tshr coding downstream 138795 70870863 ~ 70915650 (-)
brox brox,LOC107732498,LOC107710643,LOC107568230 coding downstream 186783 70856750 ~ 70867662 (-)
c3h8orf82 cunh8orf82,LOC103038903,LOC107704038,LOC107567028 coding downstream 411120 70640472 ~ 70643325 (-)
naprt LOC107728101,LOC107746003 coding downstream 414519 70622015 ~ 70639926 (-)
rhpn1 rhpn1,LOC107704026 coding downstream 434558 70600828 ~ 70619887 (-)
LOC103038639 ism2 coding upstream 16150 71077110 ~ 71086957 (-)
trnat-ugu_81 NA coding upstream 35671 71096631 ~ 71096703 (-)
ccnk ccnk,LOC107560198,LOC107555300,LOC107678663 coding upstream 38642 71099602 ~ 71105819 (-)
pigc pigc,LOC107581520,LOC107697628,LOC107712841,LOC107597814 coding upstream 113269 71174229 ~ 71177206 (-)
LOC103032944 tmed5,LOC108415774,LOC107733818,LOC108258151,LOC105910820,LOC107581519 coding upstream 119968 71180928 ~ 71189975 (-)
G32326 NA non-coding downstream 25159 71026503 ~ 71029286 (-)
G32327 NA non-coding downstream 25564 71025689 ~ 71028881 (-)
G32316 NA non-coding downstream 80888 70965016 ~ 70973557 (-)
G32285 NA non-coding downstream 236742 70817272 ~ 70817703 (-)
G32279 NA non-coding downstream 260581 70793302 ~ 70793864 (-)
G32344 NA non-coding upstream 29541 71090501 ~ 71093213 (-)
G32346 NA non-coding upstream 100342 71161302 ~ 71163064 (-)
G32375 NA non-coding upstream 193380 71254340 ~ 71257919 (-)
G32386 NA non-coding upstream 200035 71260995 ~ 71289235 (-)
G32389 NA non-coding upstream 218660 71279620 ~ 71280405 (-)
LOC103033556 LOC108410406 other downstream 11263 70917981 ~ 71043182 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 1892541 69145308 ~ 69161904 (-)
fam84a fam84a other downstream 2225425 68825989 ~ 68829020 (-)
G31622 NA other downstream 2962864 68091220 ~ 68091581 (-)
LOC103046133 LOC108439589 other downstream 3113732 67932560 ~ 67940713 (-)
G32343 NA other upstream 27915 71088875 ~ 71089461 (-)
G32364 NA other upstream 77526 71138486 ~ 71142338 (-)
G32492 NA other upstream 909544 71970504 ~ 71982053 (-)
G32557 NA other upstream 1180570 72241530 ~ 72242270 (-)
G32611 NA other upstream 1466823 72527783 ~ 72542447 (-)

Expression


Co-expression Network