ccnk (ccnk,LOC107560198,LOC107555300,LOC107678663)


Basic Information

Item Value
gene id ccnk
gene name ccnk,LOC107560198,LOC107555300,LOC107678663
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 71099602 ~ 71105819 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007242523.3
GTCGCTCTTATCTGTTTGAAGCGTCCTCCCCGCGCGAGGAAGAGTGCGGtgcggctgtgtgtgtgttcctgtgttcAGGTGTGAAAGAGAGCTCAGAGAAGCGGCGCTGCACGCGGTGTAGAGCGCCGGTATTCTCACAGTGCTCCGGGCCGGGCTGCGGGAGAGTCTGCGGGCGCTGAGGgagaggagcggagctgagCTTCAGTGAGAAGGAGCCGCGGGTCCGCCGGCCGCGCTGAGGAGAAGCAGCAGCTCTTTGTGCCTCCAGCTTTGTCAGCAGCACTTCCGATCTGTGTCAAATGAAGGAGAACAAGGAGAACTCCGCTCTCAGCAGCTTGACCACTAATCTGGACCACATCAAGCCATGTTGGTACTGGGACAAGAAGGACCTGGCCCACACCCCATCCCAGTCCGAGGGCCTGGATCCGGCCACTGAGGCCCGATACCGGAGAGAGGGGGCCCGCTTCATATTCGACGTTGGAACTCGACTGGGACTACACTATGATACTCTGGCCACAGGGATTATTTACTTCCATCGCTTCTACATGTTTCATTCCTTCAAGCAGTTCCCGAGATATGTCACAGGGGCTTGCTGTCTGTTCTTGGCTGGAAAGGTTGAGGAAACTCCAAAAAAGTGCAAAGACATAATAAAAACAGCTCGCAGCCTGCTTAATGATGTGCAGTTCGCCCAGTTTGGGGATGATCCAAAGGAAGAAGTTATGGTGTTGGAGAGAATATTGCTTCAGACAATAAAGTTTGATCTGCAAGTAGAGCATCCATATCAGTTCCTTTTGCGTTATGCCAAACAACTCAAAGGAGACAAGAACAAAGTGCAGAAGCTGGTGCAAATGGCCTGGACCTTTGTGAATGACAGCCTCTGCACAATGCTGTCTCTTCAGTGGGAGCCAGAGATTATAGCTATTGCTGTCATGTACTTGGCTGGTCGTCTGTGCAAGTTTGACATTCAGGAATGGACTTCCAAGCAGTCATCCCGTCGCTGGTGGGAACAGTTTGTGCAAGATGTTCCTGTGGAGCTGTTGGAGGATATCTGCCACCAAATCCTGGATCTATATTCTCAGGGCAAGCAGCCCATTCCACAACAGCCCCAGTTGCAGGAGAAAGACAAGCCACCGCTACCTCCTGCAGGCCAGCCAGGCCAGTCTGGAGGTCAAAACCCTGCAGCTCCACCTCCACCTAAGAAAAACTCTCCCCAGGCCAGCCCCCCACGGCAGCTTAAACGACAGCACGTTTCGCCAAAAGAAGAGTCAAAAGTTGCCACAGagCAAATTGGCTCTAAAATACCACGGCTAGAGAGTCCAATGCCTCCCTTACCAGTTACTCAGCTACTTGATCGCAAAGGCCCACCCTTAGCCCCGGCCCCTCCAACAGAGACAGAACCAGCAGCCTCAGCTGACTCAGACTTATCCAAGGCACCTCCTCCTCTGCCCCATGGAGCTCCACCGCCTCTGCCTCATCggcctccacctccaccccccTCCAGCTACATCATGGGAATGTCCACTTCTAGTTCATATATGTCGGGTGAGGGCTTCCAAAGTCTGCAGTCCATGATGAAGACAGATGCACCATCATATGCCCCTATGCCCCCTTCATATGGAATGCCTTATCACCCGCACGTTTACCCTCCTCCAAACCCTCCACCTCCTGGCCCTCCACCACCTGCAAATTACCCACCTCCTAACCTTCCACCGCCCACCCCGGCCTACCCTCCACCAGGCTACAATCACAATtaccctcctcctccccctcgcATGCCCCCAGGACATGCGGTTCCTCCGCCAGGAATAGGTTTGCCTCCTGCTGGGTATCCCCCTCCGCCAGTCCCCCCAGGCCAGCCGCAGGTACCCATGCCCCCTGGCATGCCGCCAGTGTCTGGGATGAATCGCGGAGCATGGATGAGATGAAGACGGGTTGTGTAAGGGGTGCAGCTGAAGCTCATTTCAAAATACCGTCTACCAAAAGCATCATCAGTCACCTAACTCAGGAAGGTCAGAACGTCATTGTATTGTTTAGTCATGTTATTTGTTTGTGAGAAACTCATGACTTACACTATTAACCtttatttgatttttgcctgatttctgtTTTAAGGATATAGATGTAGAATCTTCATGTttagaaatattatatatatgtgacgttagcatgtttttttttttttttttttgggggggggggggggttgcttttgtttttttctaaaatgcaGATGTAGGACATCAGTAGGGTCTGTGTAAATATGAGAGGAATCTGATCCTTAATGACATCTATTTTTACTCTAGAAAGCTTCATGAATGTGTCCCAACAACtcaaatagttttaaaatgacagCACTGACTTGGCTCCATATATTACTGTTCTGTAATCTGTTTTATTATTCATAATACAATAGAACCAGTAACTGATGAATGCTTCATTTGACCACCTAACACTGTTGGACTTTAAGACTTGAAGACAgcaaatagtgtttttttcttgaaatagagccaataataaaagtaaaatttttcAGGGGAAGGTTTTTTGATTAGATTGGTACATAAATTCTGTACATATCTCTAGAGGAAATGGTTTGGTGCTGTACGGTAGCATGAATTGTCACTTGTACATATGTACAGTAAAATTGTATAATCAGGAACATTCATGTTAATGATAGttatttttgatttattattatgctACTGTACAATTGGATGCAagaaaaatatatctttttcaTATAAACAAGTTAAAAGTGACCATCACACCTAAATGGACTAAACAGACTCTTCCGTCATTAACTTGATTTGTAGCCACAGTTTGTGTAAAGagcatttttaattattgtttatgGTAAGAACTGGAGACTtgaagacttgagacttgaacTTGAATCTTCATTCAAGCTTCTCCAGATGTGCCTTAGGCAAAATGTAGGCTTGCAGTGTTTACCAAACCATACGTGTGCAgatgcgtgtgtgtgcgcggaTGTGTGCACATGCATATGTGCGTGTGCGTTTTCCTCAAAACTTCTATCACATTGCTTGTATGATGCCTTCCTTGATATTCCACCACCCATCTCTGTTTAATTTATCTAATTTATCTAATTTGTTAACCCTTTTGGAAATATCTGGATTTCTTTGTAAACAGGTCTTAAAGTGAGAACTGCACTTTGAatcacaaagaagaagaattattaaataaatgttttttcatttttctgtctA

Function

symbol description
ccnk Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Acts upstream of or within central nervous system development. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Is expressed in central nervous system. Orthologous to human CCNK (cyclin K).

NR:

description
PREDICTED: cyclin-K isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K23326 CCNK; cyclin K

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007242523.3 True 3227 mRNA 0.47 10 71099602 71105819

Neighbor

gene id symbol gene type direction distance location
trnat-ugu_81 NA coding downstream 2899 71096631 ~ 71096703 (-)
LOC103038639 ism2 coding downstream 12645 71077110 ~ 71086957 (-)
snw1 snw1,LOC107681047,LOC106608236 coding downstream 38642 71054445 ~ 71060960 (-)
tshr tshr coding downstream 183952 70870863 ~ 70915650 (-)
brox brox,LOC107732498,LOC107710643,LOC107568230 coding downstream 231940 70856750 ~ 70867662 (-)
pigc pigc,LOC107581520,LOC107697628,LOC107712841,LOC107597814 coding upstream 68410 71174229 ~ 71177206 (-)
LOC103032944 tmed5,LOC108415774,LOC107733818,LOC108258151,LOC105910820,LOC107581519 coding upstream 75109 71180928 ~ 71189975 (-)
prkaa2 prkaa2,LOC107716554 coding upstream 907436 72013255 ~ 72031640 (-)
bloc1s2 bloc1s2,LOC107697361,LOC107716556,LOC107581516 coding upstream 1292972 72398791 ~ 72402415 (-)
pcsk9 pcsk9 coding upstream 1392903 72498722 ~ 72518295 (-)
G32344 NA non-coding downstream 6389 71090501 ~ 71093213 (-)
G32326 NA non-coding downstream 70316 71026503 ~ 71029286 (-)
G32327 NA non-coding downstream 70721 71025689 ~ 71028881 (-)
G32316 NA non-coding downstream 126045 70965016 ~ 70973557 (-)
G32285 NA non-coding downstream 281899 70817272 ~ 70817703 (-)
G32346 NA non-coding upstream 55483 71161302 ~ 71163064 (-)
G32375 NA non-coding upstream 148521 71254340 ~ 71257919 (-)
G32386 NA non-coding upstream 155176 71260995 ~ 71289235 (-)
G32389 NA non-coding upstream 173801 71279620 ~ 71280405 (-)
G32524 NA non-coding upstream 975895 72081714 ~ 72084284 (-)
G32343 NA other downstream 10141 71088875 ~ 71089461 (-)
LOC103033556 LOC108410406 other downstream 56420 70917981 ~ 71043182 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 1937698 69145308 ~ 69161904 (-)
fam84a fam84a other downstream 2270582 68825989 ~ 68829020 (-)
G31622 NA other downstream 3008021 68091220 ~ 68091581 (-)
G32364 NA other upstream 32667 71138486 ~ 71142338 (-)
G32492 NA other upstream 864685 71970504 ~ 71982053 (-)
G32557 NA other upstream 1135711 72241530 ~ 72242270 (-)
G32611 NA other upstream 1421964 72527783 ~ 72542447 (-)
G32714 NA other upstream 1591854 72697673 ~ 72698010 (-)

Expression


Co-expression Network