LOC103039380 (LOC103039380,LOC108432811,LOC108261192)


Basic Information

Item Value
gene id LOC103039380
gene name LOC103039380,LOC108432811,LOC108261192
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39975740 ~ 39977696 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007243350.3
GATTGGGGTAAGACAATTAACAAGAAACAAATTATTGggtgtaattatttatttgtgcagCTGTTTTTGCATGAGGCTACATTGGTTCAGAAAGATTGATTTGGTTGCCTAACTACCAATATATAGTCTTAACTGGTAAATGACTAATTTTGCATACGTTGTTTTGGAGGTAGTGTAGAATATAGAAGtgtatttgcatttttctttACATTCTGTACACTTTAAAGACAAGTACATAATCAAATAGTTATGTTAAAGGTAAACTATAAAATGACCTTCTGTCAGCATGTTTGAGGATTTATTTCTGAATTATTTGTGAGACAAATACGAgaaaattgtggagaaaattaaTGGAACAACTACTTTCTTTTAATATTCAGTTCTTTTCAAATATGGAATGGATTGGATGTTTAGAATCTGCATTTATATTGTTGTTTTGATGAAAATTGCAAATGCAAAATGACTACATGCTTCTAGCTCGTTcactaaaactgtttttttacagattgtATTGCAGGAACAAAATCCTGTTCTCATCAACAGTTGGACTGCGAAATGAACTCAAGTCATGCTCATGCTGTGGAAATCTCTCCCTTATGTTATGATTTTATAAATGGATCCTGTCCAAAGTTTGTCTATCCGCTGCTTTTGAAGGTGCCACTTTACTTGTTCTTCAGTTCAGTGGTGATTTTAACAGTATTGGGGAACTTGTTTGTTATTCTAACCATTGTTCATTTCAAGCAGCTTCACATGCCAACTAATTACCTGGTTCTGTCTCTGGCTGTAACTGATCTGCTGCTGGGTGGATTTGTGATGCCTCCTAGTATGCTGCGCTCTGTAGAAACTTGCTGGTATTTGGGTCCTTTGTTCTGTAAAATACACAGCAGTGTTGATATCACTTTGTCCACTGCTTCCATTataaatttgtgttttatatctATTGACAGATATTATGCTGTGTGTCAGCCCCTGCTGTATCACAGTAAAATCACTCCTTTAGTCACAGTGATCATGATCTCCATCTGCTGGACTGTTTCGGCCATAGTTGGGTTTGGAATAATATTTCTGGAGCTGAACATTCTGGGTATTGAAAAGTTTTACTATGAGAATGTTGAATGTGAAGGAGGCTGTGTGTTGTTTCAAAGTGCAGCATCGAGCACTTCTTCCTCTGTACTGTCCTTCTACATCCCAGGCATTGTGATGCTCAGTATATACATGAAAATATTTCATGTTGcacaaaaacaagcaaaatcTATTCAGGactcaaaatgtaaaaacaatataaaatcagtgttgagcaaagaagagaaaaaagccACCAAAACTCTGGCTGTGATTATGGGCGTGTTTCTGTCACTTTGGACTCCATTTTTTATCTGCAATGTCATCGATCCTTTCATTGGTTACTTAATTCCTCCACTGTTGTTTGATATGCTCGTTTGGATTGGATATCTGAATTCTATGTGTAATCCTATTGTGTATGCTTTATTCTATAAGTGGTTTAGAAAAGCATTTAAGATGGTTTTATCAGGTAAAATATTTCAGCCAGGGTCCTCAAGAACAAATCTGTTTTCACACTGATGCGGAATTATCAAATGATTAACCCTAGAACCCTAACGCCTGGTAATTTTCACCCACACAGTTTTTTCATATGATTTTAACTGTGTTGCTGGTGTCTGAGCTGCATTGGACTTTGAAAAGCTTCAGGGCTCATttaattttatggttgatttcctcctcccatctatgtttttttcaagAGGCATGCGTTCGGATGATTTTCATCCGATgttagtgatagagagtaagatattttatgggtgtaatttacctgatgttagtgtttgtgtgtttaaatcagactCTCACTTGTCCAATGAATGGATGaaccaaagaccaagttcccaaagtttccagcagcattatttttttgttaggacattacctgttaaTGATT

Function

NR:

description
trace amine-associated receptor 1-like

GO: NA

KEGG:

id description
K05051 TAAR; trace amine associated receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007243350.3 True 1957 mRNA 0.36 1 39975740 39977696

Neighbor

gene id symbol gene type direction distance location
LOC111191895 NA coding downstream 5017 39965925 ~ 39970723 (-)
LOC111196312 LOC103039380 coding downstream 14262 39960453 ~ 39961478 (-)
LOC103043887 NA coding downstream 18865 39955522 ~ 39956875 (-)
LOC111196326 LOC103039380 coding downstream 32553 39942162 ~ 39943187 (-)
LOC111191888 NA coding downstream 54296 39920108 ~ 39921444 (-)
themis themis coding upstream 16888 39994584 ~ 40017094 (-)
ptprk ptprk,LOC106607755,LOC106571353 coding upstream 42796 40020492 ~ 40112623 (-)
LOC111191900 eif4g3 coding upstream 330235 40307931 ~ 40309488 (-)
arfgef1 arfgef1,LOC107595140,LOC107686689 coding upstream 342233 40319929 ~ 40358619 (-)
cpa6 cpa6,LOC107695399,LOC107686690 coding upstream 451289 40428985 ~ 40482543 (-)
G24997 NA non-coding downstream 127531 39845373 ~ 39848209 (-)
G24992 NA non-coding downstream 149759 39819276 ~ 39825981 (-)
G24964 NA non-coding downstream 243261 39724455 ~ 39732479 (-)
LOC111196215 NA non-coding downstream 451466 39514469 ~ 39524274 (-)
G24911 NA non-coding downstream 476274 39499043 ~ 39499466 (-)
G25128 NA non-coding upstream 405905 40383601 ~ 40421173 (-)
G25174 NA non-coding upstream 748103 40725799 ~ 40726362 (-)
G25173 NA non-coding upstream 748789 40726485 ~ 40728663 (-)
G25258 NA non-coding upstream 1176571 41154267 ~ 41154801 (-)
G25255 NA non-coding upstream 1244423 41222119 ~ 41223487 (-)
G24903 NA other downstream 517551 39455236 ~ 39458189 (-)
LOC103043888 LOC108432835 other downstream 628824 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other downstream 651038 39309726 ~ 39324702 (-)
smim8 smim8 other downstream 1048747 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 1052823 38887626 ~ 38922917 (-)
LOC111196341 NA other upstream 197566 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 1236725 41214421 ~ 41218829 (-)
arhgap11a NA other upstream 1458345 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 1878399 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 1891328 41869024 ~ 41880424 (-)

Expression


Co-expression Network