LOC103029064 (LOC103029064,LOC108428730)


Basic Information

Item Value
gene id LOC103029064
gene name LOC103029064,LOC108428730
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 1457470 ~ 1469889 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245220.3
ACCTGTCTACAGCCACATTTGCATGCGGCCCCGCCCATCTGGTGAGGTCATCAGCCGTGGGTGTAGCTCCACCATTAACTGCTGAACATTGGCTCACTGGCTCCAAGGAAACCAGCAGTGCTTCCCTGGTGCCATTCATACTGGAAACCAAGCAGGAACTTCCCAGATGTTAAAATTTTGACCTGCTAACGTGATGTGGACCTGAGATGAAGATCTCACTTATTCCTGTTAAAATCTGAAGATTAGATTATGCAACCTCTGATCACCTCTATGACCTGAATCGTCCAGAAAGGCCTTAGGGAAACCAAACCAGCTTTACGTAAAAGCAGAGCACCAATGATCTCAGCCAGAAAAGAGAGCTTGCCCTCTCCCAGCCTTGAGGACTCCTTCTTCCCTTTCTCCTCATCAACTCCCTCCTCCAGGCATCGCATCATGGGCCGAGGGATCGGACCAGATGACCTCCTGACCTCCCCCAAGGGCGACAGTAGCCCTACCATGCTGGAGAAGGACCTGATCCTAGCTGCTGAAGTGGGACAGGCTCTTCTGGAGAGAAATGAGGAGCTGGAAGCTCAGCTGGAGCAAATGAAGAAAGACATGGAGGCTTTACAACAGgagaaacacacactgcagcggCACCTGGAGGTGCGGGAGCTGGAGGCAGGGCAGagggaggcggagctacagactGACCTTGTATCACTACGTGAGCAGCTGGATCAGAGGCATAGTCAGGGTCGTGATCGCCGCAAAGAGGAGAGTGAACAGCTGTCCCAGCTGTCGGCTCACAACCAGAAACTGGTGGAGCAGCTGGCAGAGgcAGTTTCTTTGGAGCACTCATTACGTATTGAGCTGCGCTCTCTGAGAGAGGAGATGGAGGACACGAGTTTCAGCAGATCAATAAGCTCTGCTCGCCTGGACAGTCTGCAAGCAGAgAACAGAGTCCTTCAGGAGCGCTTTTCTAACATGGACCAGCGGCTGAACTCAGCACAGGACGACAACGAGAGGctgaggacagagagagatggactCCGAGAGAGAGTCATCGAACTGCAGACAAATCTGAAGGAAAAAGAGACTGAGCTGGAGCAGGAGCACAGTGTGGTATTTCAGCTGCGCACCATGAATCGGAGTCTCCAGCAGAAGGTGGAGGCTCTGGGGGAGGAGGCCAGTCTTGGGGAGACCACATGCTTCCCCCTGTCCCTCCAGAATGAGCTCCAGCAGTCTCAGGCCAAAGAAACCATCATGGCCCACTCAGCAATCCTGCAGGAACAGGAGGAGGAGATTCAAAGGCTAAAGAAAGAGCTGGAGATTAATCAAGCCGAATTAGAAAAACTGAGAGAAGAACTGAAGCCGTTTACAAGCTCTCCTGACAAACCAACATATAGTGCCTTGGAGGAGGAGATCATTTTGGCCAGACAAGAACGTGACTCGCTTAACCAGCAGCTTCtgaacaccattaaacacaaggTGGCACTGTCTCAGGAAGTTGAGTCATGGCAGGAGGACATGCGTCTAGTCATATGTCAACAGGTGCAGCTTCAAGAACAAGAGAGGAAAAGGGagctggagaaagaaaaaacaccatCGCCACTGCAAAGAGGCACTCGCACAAGCAAATCCCTGCGTTTACCGAGAGAGGAGGGCAAGAAGAGCTTCTTCTCTACTCTATTTGGTGGAGAAAGTTGAgtgtaagaaaaagaaaaggaaaggaaaggaaagcaAATCTTCTTTAAGAGCATTTTCCTTCAATTtgtaaatattagtgttttcCAACAGTGTAAATAAGATGAATGTGgactaaatataatatattttggcATGGGATTTGGCATGCATttctcatatttcatatttattttattacagccAGCAAAGAGTCCATTATCAACAATGATGACAAAAAATTAGTACTTTAATCATCTTATGACATGATACACTGATTTCAAAGTGAGGTAGTAGTTGATTCAATAATTGTGACACTTTATAGCACCCAACATTTTATACATGTGTTTCACTGCCAAATGTTTGTTCCCAATATAAAAGTTTCTCGTTCACACA
>XM_007245222.3
ACCTGTCTACAGCCACATTTGCATGCGGCCCCGCCCATCTGGTGAGGTCATCAGCCGTGGGTGTAGCTCCACCATTAACTGCTGAACATTGGCTCACTGGCTCCAAGGAAACCAGCAGTGCTTCCCTGGTGCCATTCATACTGGAAACCAAGCAGGAACTTCCCAGATGTTAAAATTTTGACCTGCTAACGTGATGTGGACCTGAGATGAAGATCTCACTTATTCCTGTTAAAATCTGAAGATTAGATTATGCAACCTCTGATCACCTCTATGACCTGAATCGTCCAGAAAGGCCTTAGGGAAACCAAACCAGCTTTACGTAAAAGCAGAGCACCAATGATCTCAGCCAGAAAAGAGAGCTTGCCCTCTCCCAGCCTTGAGGACTCCTTCTTCCCTTTCTCCTCATCAACTCCCTCCTCCAGGCATCGCATCATGGGCCGAGGGATCGGACCAGATGACCTCCTGACCTCCCCCAAGGGCGACAGTAGCCCTACCATGCTGGAGAAGGACCTGATCCTAGCTGCTGAAGTGGGACAGGCTCTTCTGGAGAGAAATGAGGAGCTGGAAGCTCAGCTGGAGCAAATGAAGAAAGACATGGAGGCTTTACAACAGgagaaacacacactgcagcggCACCTGGAGGTGCGGGAGCTGGAGGCAGGGCAGagggaggcggagctacagactGACCTTGTATCACTACGTGAGCAGCTGGATCAGAGGCATAGTCAGGGTCGTGATCGCCGCAAAGAGGAGAGTGAACAGCTGTCCCAGCTGTCGGCTCACAACCAGAAACTGGTGGAGCAGCTGGCAGAGgcAGTTTCTTTGGAGCACTCATTACGTATTGAGCTGCGCTCTCTGAGAGAGGAGATGGAGGACACGAGTTTCAGCAGATCAATAAGCTCTGCTCGCCTGGACAGTCTGCAAGCAGAgAACAGAGTCCTTCAGGAGCGCTTTTCTAACATGGACCAGCGGCTGAACTCAGCACAGGACGACAACGAGAGGctgaggacagagagagatggactCCGAGAGAGAGTCATCGAACTGCAGACAAATCTGAAGGAAAAAGAGACTGAGGCCAAAGAAACCATCATGGCCCACTCAGCAATCCTGCAGGAACAGGAGGAGGAGATTCAAAGGCTAAAGAAAGAGCTGGAGATTAATCAAGCCGAATTAGAAAAACTGAGAGAAGAACTGAAGCCGTTTACAAGCTCTCCTGACAAACCAACATATAGTGCCTTGGAGGAGGAGATCATTTTGGCCAGACAAGAACGTGACTCGCTTAACCAGCAGCTTCtgaacaccattaaacacaaggTGGCACTGTCTCAGGAAGTTGAGTCATGGCAGGAGGACATGCGTCTAGTCATATGTCAACAGGTGCAGCTTCAAGAACAAGAGAGGAAAAGGGagctggagaaagaaaaaacaccatCGCCACTGCAAAGAGGCACTCGCACAAGCAAATCCCTGCGTTTACCGAGAGAGGAGGGCAAGAAGAGCTTCTTCTCTACTCTATTTGGTGGAGAAAGTTGAgtgtaagaaaaagaaaaggaaaggaaaggaaagcaAATCTTCTTTAAGAGCATTTTCCTTCAATTtgtaaatattagtgttttcCAACAGTGTAAATAAGATGAATGTGgactaaatataatatattttggcATGGGATTTGGCATGCATttctcatatttcatatttattttattacagccAGCAAAGAGTCCATTATCAACAATGATGACAAAAAATTAGTACTTTAATCATCTTATGACATGATACACTGATTTCAAAGTGAGGTAGTAGTTGATTCAATAATTGTGACACTTTATAGCACCCAACATTTTATACATGTGTTTCACTGCCAAATGTTTGTTCCCAATATAAAAGTTTCTCGTTCACACA

Function

NR:

description
BICD family-like cargo adapter 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245220.3 True 2058 mRNA 0.48 10 1457470 1469889
XM_007245222.3 False 1911 mRNA 0.47 9 1457470 1469889

Neighbor

gene id symbol gene type direction distance location
cryab cryab,LOC108259721 coding upstream 15361 1437806 ~ 1442109 (+)
LOC111191737 NA coding upstream 848041 600428 ~ 609429 (+)
LOC103023152 NA coding upstream 899068 551043 ~ 558402 (+)
LOC103028849 NA coding upstream 933332 509572 ~ 524138 (+)
LOC107196798 NA coding upstream 963101 483139 ~ 494369 (+)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203 coding downstream 27819 1497708 ~ 1500545 (+)
alg9 alg9,LOC107691744 coding downstream 64140 1534029 ~ 1549757 (+)
LOC103032850 ppp2r1a,LOC103032850,LOC108428700,LOC108260120,LOC107691746,LOC107745127,LOC107603174,LOC107663771 coding downstream 89960 1559849 ~ 1579498 (+)
btg4 btg4 coding downstream 194707 1664596 ~ 1669346 (+)
LOC103036563 hepacam coding downstream 717497 2187386 ~ 2203190 (+)
G15771 NA non-coding upstream 42 1454327 ~ 1457428 (+)
G15749 NA non-coding upstream 36662 1415182 ~ 1420808 (+)
G15748 NA non-coding upstream 44901 1409933 ~ 1412569 (+)
G15724 NA non-coding upstream 751668 686073 ~ 705802 (+)
LOC111194479 NA non-coding upstream 842231 613037 ~ 615239 (+)
G15813 NA non-coding downstream 111624 1581513 ~ 1581946 (+)
G15818 NA non-coding downstream 116889 1586778 ~ 1636251 (+)
G15831 NA non-coding downstream 154037 1623926 ~ 1624377 (+)
G15845 NA non-coding downstream 259941 1729830 ~ 1730349 (+)
G15890 NA non-coding downstream 358895 1828784 ~ 1829016 (+)
LOC103025578 NA other upstream 116670 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 1336289 70784 ~ 121181 (+)
fdxacb1 fdxacb1 other downstream 46608 1516497 ~ 1529417 (+)
G15839 NA other downstream 211270 1681159 ~ 1682022 (+)
nrgn NA other downstream 680741 2150630 ~ 2171207 (+)
LOC103038305 NA other downstream 3046108 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 4698871 6168760 ~ 6177884 (+)

Expression


Co-expression Network