ufc1 (ufc1,LOC107574697,LOC107691797,LOC107603203)


Basic Information

Item Value
gene id ufc1
gene name ufc1,LOC107574697,LOC107691797,LOC107603203
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 1497708 ~ 1500545 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245225.3
TCTCTGTGGCTGAATGTATGGAGGTGGGAAACAAGCGCTGAACTTTTGGTTCCGGCTGAGAATGAGAAAGACGCTTAAAGAACTGACTCGTTTTCTGTGATGCTTTTACTATGAAAAGTTTTAAATCGCGGTAAACGCTGTGTTCTATTAACCCGCTTAAGATTAGTCTCTTTATAACGCGGGCACACTTTAACCTCAGGAGCTCTCTGACGTCAGCCGGTACACACAGCGGAGCACCATGGCGGATGAAGCCACACGAAAAACCGTGTCTGAAATCCCGCTGTTAAAAACCAACTCTGGACCGAGAGACAAGGAGCTGTGGGTCCAGAGACTGCGGGAGGAATACCTGGCCCTCATTAAATATGTTGAGAATAATAAAGCGGCTGACAATGACTGGTTTCGTCTAGAGTCCAACAAAGAGGGCACGAGGTGGTTTGGGAAATGCTGGTATATCCATGAACTTCTCAAGTATGAATTTGACATGGAATTTGATATTCCTGTCACATATCCAGCCACAGCACCTGAAGTGGCAATTCCTGAACTTGATGGGAAGACAGCTAAAATGTACAGGGGTGGCAAGATCTGCCTGACTGACCATTTCAAACCACTTTGGGCAAGAAACGTGCCAAAATTTGGATTAGCACATCTTATGGCCCTTGGACTTGGACCTTGGCTTGCAGTAGAGATACCTGACCTCATTTCTAAAGGTATAATACAACACAaagagcagcagagcagctgaAAAGGGATTCCAGAAAAGTTAACAAGAGAGCTACAGACCACCTACAGACAGCCTTAGAGGCATAATGTCATCTTTCTGTTGAGAAGGACTCTTAAACAAATGATCTGTTTGGCCTTACAGCCACATGTACTGTATGGCATTCccggcacacctgtgttttggCTAAACGTCCATTTAAGCCTAGAAAGAGAAtctattgtttatatttatatttagcaaAGTAAGTAAGCAAGATTACAGGACCATACTAATTTATGGAATTAAATCATCTATTGCGTTGTAAAGCTTTTCCTTATTTCTATATGTCTTTATGTTTAACACACTGGCAACAGATTAAACGGAAGTCACCTATCATA

Function

symbol description
ufc1 Predicted to enable UFM1 conjugating enzyme activity. Predicted to be involved in protein K69-linked ufmylation. Orthologous to human UFC1 (ubiquitin-fold modifier conjugating enzyme 1).

NR:

description
ubiquitin-fold modifier-conjugating enzyme 1

GO:

id name namespace
GO:0071569 protein ufmylation biological_process
GO:0071568 UFM1 transferase activity molecular_function

KEGG:

id description
K12165 UFC1; ufm1-conjugating enzyme 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245225.3 True 1098 mRNA 0.43 6 1497708 1500545

Neighbor

gene id symbol gene type direction distance location
LOC103029064 LOC103029064,LOC108428730 coding upstream 27819 1457470 ~ 1469889 (+)
cryab cryab,LOC108259721 coding upstream 55599 1437806 ~ 1442109 (+)
LOC111191737 NA coding upstream 888279 600428 ~ 609429 (+)
LOC103023152 NA coding upstream 939306 551043 ~ 558402 (+)
LOC103028849 NA coding upstream 973570 509572 ~ 524138 (+)
alg9 alg9,LOC107691744 coding downstream 33484 1534029 ~ 1549757 (+)
LOC103032850 ppp2r1a,LOC103032850,LOC108428700,LOC108260120,LOC107691746,LOC107745127,LOC107603174,LOC107663771 coding downstream 59304 1559849 ~ 1579498 (+)
btg4 btg4 coding downstream 164051 1664596 ~ 1669346 (+)
LOC103036563 hepacam coding downstream 686841 2187386 ~ 2203190 (+)
ccdc15 ccdc15 coding downstream 709100 2209645 ~ 2220704 (+)
G15771 NA non-coding upstream 40280 1454327 ~ 1457428 (+)
G15749 NA non-coding upstream 76900 1415182 ~ 1420808 (+)
G15748 NA non-coding upstream 85139 1409933 ~ 1412569 (+)
G15724 NA non-coding upstream 791906 686073 ~ 705802 (+)
LOC111194479 NA non-coding upstream 882469 613037 ~ 615239 (+)
G15813 NA non-coding downstream 80968 1581513 ~ 1581946 (+)
G15818 NA non-coding downstream 86233 1586778 ~ 1636251 (+)
G15831 NA non-coding downstream 123381 1623926 ~ 1624377 (+)
G15845 NA non-coding downstream 229285 1729830 ~ 1730349 (+)
G15890 NA non-coding downstream 328239 1828784 ~ 1829016 (+)
LOC103025578 NA other upstream 156908 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 1376527 70784 ~ 121181 (+)
fdxacb1 fdxacb1 other downstream 15952 1516497 ~ 1529417 (+)
G15839 NA other downstream 180614 1681159 ~ 1682022 (+)
nrgn NA other downstream 650085 2150630 ~ 2171207 (+)
LOC103038305 NA other downstream 3015452 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 4668215 6168760 ~ 6177884 (+)

Expression


Co-expression Network