LOC103032850 (ppp2r1a,LOC103032850,LOC108428700,LOC108260120,LOC107691746,LOC107745127,LOC107603174,LOC107663771)


Basic Information

Item Value
gene id LOC103032850
gene name ppp2r1a,LOC103032850,LOC108428700,LOC108260120,LOC107691746,LOC107745127,LOC107603174,LOC107663771
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 1559849 ~ 1579498 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245234.2
GCGGAAACCCCGCAGCAGCAACAGCCGGTGACAAGATGGCGGGAGCCGACGGCGACGATTCTCTCTATCCCATTGCGGTGCTTATTGACGAATTAAGGAATGAAGACGTTCAGTTGCGGCTGAACAGCATCAAGAAACTCTCCACTATTGCTCTGGCATTAGGAGTGGAAAGAACACGCACTGAGCTTCTCCCTTTCTTGACAGATACCATCTACGATGAAGATGAAGTGCTTCTCGCCCTTGCTGAACAGCTGGGTAACTTCACCATGCTGGTTGGCGGCCCCGAGTATGTCCATTGCCTCCTTCCACCCTTGGAGAGCCTGGCCACAGTGGAGGAGACAGTGGTGCGAGACAAAGCAGTGGAATCCCTACGCAAGATCTCCCATGAGCACTCACCTGTAGACCTGGAGGTGCATTTTGAGCCACTGGTAAAGCGTCTGGCCAGTGGCGACTGGTTCACCTCCCGCACCTCAGCCTGTGGACTGTTTAGCGTCTGTTATCCACGGGTCTCCAGCACTGTCAAAGCTGAGATTCGCCAGCATTTCCGTAACCTGTGCTCTGATGATACTCCTATGGTACGTCGTGCTGCTGCTTCCAAGCTGGGAGAGTTTGCGAAAGTCCTGGAGTTGGAATACGTCAAAAGTgacattatctctctctttactgcGCTGGCCTCtgatgagcagGACTCTGTACGTCTTTTGGCTGTGGAGGCATGTGTGAGCATCGCTACACTGCTGCCTCAGGAGGACCTGGAGACTCTGGTCATGCCAACTCTCCGCCAGGCAGCTGAGGATAAATCCTGGAGGGTGCGCTACATGGTGGCTGACAAGTTCTCTGAGttacAAAAGGCAGTTGGTCCAGAAATCACGAAGAATGACCTTGTTCCAGCCTTCCAGAATCTTCTCAAAGACTGCGAGGCTGAGGTTCGGGCAGCAGCTGCTAATAAAGTCAAAGAATTCTGTGAGAATTTACCGGAAGATAGCCGAGAGACAATCATCATGACTCACATTCTGCCCTGCGTCAAGGAATTGGTTTCCGACACGAATCAGCATGTCAAATCAGCACTGGCCTCTGTGATCATGGGTTTGTCGACCATTCTGGGCAAGGACAACACCATCGAGCACCTGCTGCCTCTCTTCTTGGCCCAGCTCAAGGATGAGTGTCCAGAGGTGCGCCTGAACATTATTTCTAACTTGGACTGTGTGAACGAAGTCATTGGAATCCGCCAACTGTCCCAGTCTCTGCTCCCAGCTATTGTGGAGCTGGCAGAAGATGCAAAGTGGAGAGTGCGGCTGGCCATCATAGAGTACATGCCACTGCTTGCAGGCCAACTGGGAGTGGAGTTCTTTGATGAGAAGCTAAATTCCCTGTGCATGGCCTGGCTTGTTGATCACGTGTACGCCATCAGAGAGGCAGCCACGTGTAACCTGACGAAGCTGGTAGAGAAGTTTGGAGCAGAATGGGCTCAGAACACCATTGTTCCCAAAGTGCTGGGCATGGCCAACGACCCAAACTACCTGCATCGGATGACCACTCTGTTTTGCATCAATGCTCTGTCAGAAGCATGCGGTCAGGAGATCACCACTAAACACATGCTTCCTGTCGTCCTGAAGATGTCCAATGACCAAGTGGCCAATGTGCGCTTCAACGTGGCCAAGTCTCTGCAAAAGATTGGCCCTGTTCTAGACAGCAACTGTCTGCAGGCTGAGGTGAAACCAGTACTGGAGAAGCTAGCTGCAGATCAAGATATAGACGTCAAATACTTTGCCCAGGAGGCCGTAAGTGTTCTTGCCTTGGCCTAGTGGAGCTGCTGATGAACTCCTTCCCCATGTCAGGCTGACCTGCACATACTGATCATCATCCAGGATCATTCATTGGACTGTTATTAGAGAGGAAACGAGTTCAGCTTGTTTGTCTCGTTTATAAGTGTCAGAGAGCAGCGTCTCTGCTGTTGCAGTATTTGGTTTGAGTCTGTCAGTTTatctgtttcttcttcttcttcttgctttcttttgttctttctatctcttactctactctttctctctcagcctTGAATGATCCTAAGCACCTCTCCCAGTCTCACCCTTCATTCTAACTACAGTTCATTAGgctgacacacaaacacacatcttTCCCTGCCCccctcttcacacacacacagtagtatGTTTATCACATTGTATTCACTCACACCTCTTGCTACCCCTGGCTCAGTCCCCTCAGTGGGCAGCACTTTTAAGTGTAGTCTTAGTATTTAATgaactgctgagataaatactTGCAAGAATACAAACTCTATATCTATTAGGGGGTGGTGATGTTGAATAAGATGataaggaggaagaggaggaggatgattgTGATCTCAAGGCCCCAGTTAACTGCTAACTGTATCCGCTCTAGTTTCTGTGTGCTAAGAACAGAAGCATATGAGCAGTTAATACTGATTCAGAGCTTGCATGGCTTGCTTCGAGTCCTGCGCTCCCTGCCCAACCCTCTGCATGCATGTGGATGTCTGGACTGATCACAGCTCAAAACTGACAAAAGAACTGCCGCTGTTAGCACTTAGCATCAAGCCTGTGCATTCCATCCGTTGTCTTATATGGCTGTGAATATATGTTCAAGCCCAGGTTCTTCAAGACGTTGGCTGCAGTATTTCCACATTgtgctgttttgctgtttctaACCCAGCTAGCTCTCTGTTAGTACTCCAAATTGAATGGTTATGATCGAAAAGGGACCATAATGAACTATGCCTTGTCCTATTAAGAGTCATAATCCTGAGGAAGCTTTTGCGgctcctttttttttgtgcttttcacTGCATGGTACCTACATTACTCAACTCTGTACCAGGTGATGTTCCCAAAACACTGTCTCTACTATTGTCTTTAAAgtaaagacacagaaacagttCAGAGTGCTCCTGAAGAGATTGTGTTCCAGATTTTTGGAGATTGTGGCTTTTTGCGTCACAAAAAGGTTGCTCTGCAAAGTTCACGGGTCACGTTTTAGTCTAGACTTGTTTGGAACCATGAGCGAACAGGTAAAGTGTATGTACCCAGTACCCATGTACTGAGTTTGCCTGAAAGCAAAGCAAAAGAGCTGTATAGAGTTGAGTCGGTTAGTGTCGGTACCATGCAGTGTGAATGCACCATTTCTCTGCCAATTCTTGGCCATCCTGTAATCAGCCATGCTGCACATTAATGGATATTTTATTTTCCCTTTTAATTATTCTGTCTTGTGttcatatttgtttgttttattttgaacCAGATCATCTGTAACTGCTCTTAAACTTCTGCATGTTCAAATGTGAACTCCACTGCTGTAGGCAAAGCCTCATTAGCAAGAGAACAGACAGTTATGGGTCAGTTAATTCACTTCCAGGCAGCACGTTTTCCCCGTTATTAACATGTTAGCTTTGCCGGTGATGCCTACTTCAACTTCTTTCcccacagctttaaaaaaaacagaaacccaGTCTTGTTTTTGTTGTCTTGATCGTTGTCAGAATGTGCTTTTTGGTTTTATATGAACGTGAACCCACACTGCCCTCGGAACGGAGGGTAGAGTCAATAAAGAACCTGTTAGAAACACA

Function

symbol description
ppp2r1a Enables protein antigen binding activity and protein heterodimerization activity. Involved in chromosome segregation. Located in chromosome, centromeric region and nucleus. Part of protein phosphatase type 2A complex. Implicated in autosomal dominant non-syndromic intellectual disability 36.

NR:

description
serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform

GO: NA

KEGG:

id description
K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245234.2 True 3607 mRNA 0.47 15 1559849 1579498

Neighbor

gene id symbol gene type direction distance location
alg9 alg9,LOC107691744 coding upstream 10092 1534029 ~ 1549757 (+)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203 coding upstream 59304 1497708 ~ 1500545 (+)
LOC103029064 LOC103029064,LOC108428730 coding upstream 89960 1457470 ~ 1469889 (+)
cryab cryab,LOC108259721 coding upstream 117740 1437806 ~ 1442109 (+)
LOC111191737 NA coding upstream 950420 600428 ~ 609429 (+)
btg4 btg4 coding downstream 85098 1664596 ~ 1669346 (+)
LOC103036563 hepacam coding downstream 607888 2187386 ~ 2203190 (+)
ccdc15 ccdc15 coding downstream 630147 2209645 ~ 2220704 (+)
slc37a2 slc37a2,LOC107691751 coding downstream 644538 2224036 ~ 2240887 (+)
LOC103037703 LOC108427349,LOC108259736,LOC107664292,LOC107556423,LOC107600796,LOC107712935,LOC571737,LOC107744331 coding downstream 664963 2244461 ~ 2259339 (+)
G15771 NA non-coding upstream 102421 1454327 ~ 1457428 (+)
G15749 NA non-coding upstream 139041 1415182 ~ 1420808 (+)
G15748 NA non-coding upstream 147280 1409933 ~ 1412569 (+)
G15724 NA non-coding upstream 854047 686073 ~ 705802 (+)
LOC111194479 NA non-coding upstream 944610 613037 ~ 615239 (+)
G15813 NA non-coding downstream 2015 1581513 ~ 1581946 (+)
G15818 NA non-coding downstream 7280 1586778 ~ 1636251 (+)
G15831 NA non-coding downstream 44428 1623926 ~ 1624377 (+)
G15845 NA non-coding downstream 150332 1729830 ~ 1730349 (+)
G15890 NA non-coding downstream 249286 1828784 ~ 1829016 (+)
fdxacb1 fdxacb1 other upstream 30432 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 219049 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 1438668 70784 ~ 121181 (+)
G15839 NA other downstream 101661 1681159 ~ 1682022 (+)
nrgn NA other downstream 571132 2150630 ~ 2171207 (+)
LOC103038305 NA other downstream 2936499 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 4589262 6168760 ~ 6177884 (+)
G16820 NA other downstream 4952898 6532396 ~ 6532868 (+)

Expression


Co-expression Network