prkrip1 (prkrip1,LOC106567678,LOC107600793)


Basic Information

Item Value
gene id prkrip1
gene name prkrip1,LOC106567678,LOC107600793
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 2704314 ~ 2707975 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245258.3
ATGGTAGAGGGCAGCACCTACACTGAATCCTCTGTTCGCtgaaagaagaaggagaagaaggaggtgtgtgagtgagagggaAACATGGCGGTTCCTCAGAAAGATGCTAACGTTAAACCGGGTAAAGCTGGCGGAAAGGAGCCGCAGCCTCTGATTATCGCTAAAACTCCTGCAGAGGAGCAGCGGCTGAAACTGGAGAGATTAATGCGGAACCCGGACAAACTCGCTCCCATACCCGAACGACCCAAAGAGTGGAACCCAAGAGCTCCTCCAGAGTTTGTGAGAGATGTTATGGGCTCAAGTGCTGGTGCAGGCAGCGGAGAGTTCCATGTGTACAGACACTTGAGACGGCGCGAGTATCAGAGACAAGACTTCCTTGACCGGATGTCAGATAAGCAAAAGCTTGATGAAGATTATATTCAGAAGGTGCAGGATAACCAGACAGctgcagaggagaggacagcCAAAAGAAGGAAGAAGAGagaaaagCTTAAACTGAAGAAACAGATGGCAAAGAAAGCTAAATTGGAAAGCCAAAAGGGATCAGATAAGGAAGATTCTTCAGCAAGTTCTAATGAGTCGACTGAGGAGCAGGAAGCGGAGGATGATGCAGAGTTACCCAGCTTTATTATGGGAAAGAGGTGATTCTCAAGGACGAATGGTCATAGCCTATCGATTCTGAAAGCATCTGGCATCATGTTGGGCTCAAGTGCTGAGGCATTCTAATCCACAGAAAGACTTTTAAACCTGTTGTGGGTGTGGATGATACAACCTAACATTTTCCTGATCTGGCTACAATTGTGAAACACCTATATATTGACTCAAGGTAAATGTCGTATATGGTATTGATTGGTACAGCCTGTTTGTTTCCAGCAATACAAGATCAATTTACCGAAATATTTGactaaattgattttttttactgtacatattttaataaacaactactaaaaactgaa

Function

symbol description
prkrip1 Predicted to enable double-stranded RNA binding activity; protein kinase binding activity; and protein kinase inhibitor activity. Predicted to be involved in negative regulation of protein kinase activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Predicted to be active in nucleolus. Orthologous to human PRKRIP1 (PRKR interacting protein 1).

NR:

description
PRKR-interacting protein 1

GO:

id name namespace
GO:0005730 nucleolus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245258.3 True 959 mRNA 0.44 6 2704314 2707975

Neighbor

gene id symbol gene type direction distance location
LOC103041644 LOC103041644,LOC108428528,LOC107709757 coding upstream 18964 2642597 ~ 2685350 (+)
rabep1 rabep1,LOC107691762 coding upstream 87451 2589579 ~ 2616863 (+)
LOC111191739 NA coding upstream 127662 2573451 ~ 2576652 (+)
derl2 derl2,LOC106567674 coding upstream 134715 2563803 ~ 2569599 (+)
ccdc84 ccdc84 coding upstream 373773 2325547 ~ 2330541 (+)
LOC103040935 LOC103040935 coding downstream 4396 2712371 ~ 2719413 (+)
LOC103040420 rasa4,LOC108428505,LOC108260369,LOC107561580,LOC107744328,LOC107709756,LOC107691765 coding downstream 21319 2729294 ~ 2775073 (+)
clip2 clip2,LOC107709754,LOC107744329 coding downstream 72191 2780166 ~ 2834556 (+)
gtf2ird1 gtf2ird1,LOC107600764 coding downstream 128725 2836700 ~ 2867991 (+)
LOC103038960 dtx2,LOC107600799,LOC107691768,LOC108260301,LOC107689380,LOC107709752 coding downstream 160811 2868786 ~ 2885308 (+)
G16113 NA non-coding upstream 16273 2687297 ~ 2688041 (+)
G15995 NA non-coding upstream 371058 2330822 ~ 2333256 (+)
G15963 NA non-coding upstream 519238 2184854 ~ 2185076 (+)
G15947 NA non-coding upstream 574034 2129879 ~ 2130280 (+)
G15940 NA non-coding upstream 601765 2102272 ~ 2102549 (+)
G16141 NA non-coding downstream 198953 2906928 ~ 2907676 (+)
G16204 NA non-coding downstream 307447 3015422 ~ 3016421 (+)
G16230 NA non-coding downstream 482437 3190412 ~ 3191314 (+)
G16229 NA non-coding downstream 483585 3191560 ~ 3201320 (+)
G16237 NA non-coding downstream 495979 3203954 ~ 3204293 (+)
nrgn NA other upstream 533107 2150630 ~ 2171207 (+)
G15839 NA other upstream 1022292 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 1174897 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 1363514 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 2583133 70784 ~ 121181 (+)
LOC103038305 NA other downstream 1808022 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 3460785 6168760 ~ 6177884 (+)
G16820 NA other downstream 3824421 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 4714596 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 5460864 8168839 ~ 8184837 (+)

Expression


Co-expression Network