LOC103041644 (LOC103041644,LOC108428528,LOC107709757)


Basic Information

Item Value
gene id LOC103041644
gene name LOC103041644,LOC108428528,LOC107709757
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 2642597 ~ 2685350 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245259.3
GGAACTGCAGCGGCAGCTGAAACGTGCTATAGCTGTTTCTCGCATTGTCCCTCAAACAGCGGTGCGCCTTCACAGCGGCCAGACCTCCTCCTCCCCAGCTCTGCTCCTCTCCAGCCCGGGTACTCCACCGACATGGCACAGTGCTGGCCGGCACACGGAGTAGTTTGAGCGTGTTTCGCGGGGGACTACCATGTCCCAAAAACAGCGGGAGGCGAACTCCTGCCCAGACGGGTACAGGGTCCTGAACACCAGCGAACTGCGCGAGCTCCTCCAGGATGAGGAGAAAATGGATCAGATCGTGAGACTCAACGAGAAGtttcaGGAGCTGCAGGTGGACAGGGAGACGTTATTAGTAACCAATCGAAGTCTTGCCGAGGAGAGCCTTGCACACCGCCCCCGCCTCCAGAACGGCAAGCTGCAGTTGGCTACTAAGTACCAGGAGCTTGCGAAGCTGACCACCGCCTGCAGGGAAAAGCAAAGCCGGCTTGAGGGCCACATGAAGAAGCACAGTCCACAGACGGCACAGAATCTACTTCAGGAGGAGGTAGCACGTGCTGAGGAGCAGTCTGAGGAGCTTCTGGAGAGATTCATGGAGGGCCAGGTCCCACTGGAGGGCTTCCTGGACTCCTTCCAGAGCTTCAGGAAGACGTACCATATCCGCCGTGCGCAGGCCGAGAAGATCCAAGAGCTCAACCGGCCTGAGCGGAAGCAGAGGAAGCGCTTGGAAGAGGAGGAGGTGCGGAAGAAGGAGGAGGTGCCAAAGGAACCCCGTCCCAATGGAATCACTGCCCACGGCCCGCCTCGTGTCTTCCAGCTCCGATACGGCCTCACGCCGGCCATCCTAGTGCCGCTGAACTCGTCTTCAGCCGTCACCTCTTCCGCTAGCTTGTCTCCTCTGGACTCGTGCTCAGGCCCCCCCCAGGCTTCGGGGCCTAGCGCTCCTCACTCCTGCCCCGGGCAGCCTGTAGGCCTGAGGGTGATAGGACAGTTGCCGGGCTGGCCAACCAGACCGGTCCGGTTACAGCAGCTGTACAGGCCCAGCCCGCACCAGCACGAACCTCCGTACCGATAACGTCTAAACACTGTGGATTTGACATGAGGAAAACAAACCCAAGGTCATGAGTGAAGGCCTTTTTAAGCTTTGGGTCGATGTAAAAATATCTGTGATCACCACAAAAGCCAATTTCATATGTTGAAAAGGGAAAAGATTGGAAAGCCATAAAATGTTTCGTCTTTGTCGTGAACAAGCCTGTCGAATACACAGCTCCAGAGGGGTATTACACAAAGCAAAGAAGGATTTTTGTATTAgccagtggccactttattggaaactctTACCTTCCAGCTCCATTTTACTATGGTCCAATTCTCCAGCCCATTTGCTGATGCACATCTTTTCATCAGAGGTGCTCTTGGCTGCATATTTTTTGGTGGTGGACCAACACTGTTGGCTGATACACTGATGTATACCAGCACCACACATGCTACCATGTGTCGTGTCACTGCTGTTTAAAATGTTCCATCTGTTCCAGCAGACAATCTAAGGTCAACAACagttctgtggtcagaaactgatGAATGGGATatgttattctgttatttttaaaaaaggtccTTTAAAAAGGTATAAAAGGTATAAAAACATGACTAGACCTGTCACAATTATATTTTGCTGTctcaaaaataattgtgatacattttattatgatctatttttttaagacCATTATAGATAATACCTCTAATGAAGCTAATGGTAATAAAAagcattataatacatttatacattacattttaggAGCAGTTAACTTTTTAAGATCAAGAATATTCAGGCATTAGaattgaaaatgtttaaatattcagcataaataatacaaaaccaCAGTTTAAAAACAGGCTCAAAATATCTGCGCAGTCACACACAATGGccaatattgaggtcagcaaaaagtatttagttttattcatttatatttaagcaataattcacgagagggagtgctataacctgtaatattggcactgctgtgctgcggtcataGGCACGAGGCCACATGCACAAACCttaattgtattattgtgattataccacagttccatatcactgtttattaaaagattttgagttaaagaggactaGAAAAtaagatctgtttggttattaaaaaaaactcagtttgTAGCTGCagtgtttggcttgtaagcgctgcatggttgctaggttacctgtatgtggcggagtaatacatggagagcttcggttacagtgcattaccggctgataacagcactcatagaacgcctctcagccaatcacattgcagggtcgaaaCTAACGGTGGTATAATGTACAATAGgttgcataaaaataaaataattgtgacaggcctaaccatgacaattccaaaaaaacatttaaatgcttaaatactAACTTTTTAATGTGTGGTCCATGGATTGGTGATAAACATTAAATAGATGGTTCTCTGATTTACCAAACAGTGCCTGTGTCCCAATTGTGaactacacactaatactagTGTAAGGTATAGACTACATACTAATCTTAACAGTGCAGGTTTGGCAAGTTAGTACACAAActattattgtattaattttgtATTGTGGGAAACAGACTACTTCTGAGTATGTTGTTTTGTTGATATTTTAGTATACTCAGCTCTCACATTTGTATCTATACTATATGTTACATATTTACAAACTAAGAAGTACTAGTAATTAGCATGCATTTGGGACACATCCATTGTTTCACTACCGTTCTAAGTCAAAGAACCACTATCCAGTGATCCTTTTTGTATAATTGGAGCGTAGAGGACAGCTGATTAATCTTGCATGACAGCAGATGGGCTGACAGCTGTAACTGTACACCTCTATAGAAGACATAAGGTAAACGGGCGTGGTAAAGGTAAGGGTTTCTGATGAAGCAGGTGAGGAGCGTAAACTTGACCAAAAGTCAAGCTTGTCCATTAGGAGGACAGGTCAGAAGGACTATGCCTATTCTTACTTTGGGCTCATTTTGGGTTATCCAGCCACAGTAAGAGAACATGCTTTATGAAATACCCAGAAGGATGTATAATGTTGttgttgcttgtttttttttgttttatttttttttatgtgtgtgtccCTTTGTGGGCGTTTTGCAGATTCCATGCTGCTGCTTTTGTGGGGGAAGAAAAGAATTGTTGAGACACTGCTTTCTGACTGGAAGGACTTGTTATATTTGCCATTGATAATCTGAAATGCCAGGCTCGTGATATGCCTTCTTGTAATGGTGACGATGATCAATAAAGTCCAATTatgatgtttattataaataaatattggagCCATTATGAAACTCTCTTAAA

Function

NR:

description
vacuolar protein sorting-associated protein 37D-like

GO: NA

KEGG:

id description
K12185 VPS37; ESCRT-I complex subunit VPS37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245259.3 True 3371 mRNA 0.44 4 2642597 2685350

Neighbor

gene id symbol gene type direction distance location
rabep1 rabep1,LOC107691762 coding upstream 25734 2589579 ~ 2616863 (+)
LOC111191739 NA coding upstream 65945 2573451 ~ 2576652 (+)
derl2 derl2,LOC106567674 coding upstream 72998 2563803 ~ 2569599 (+)
ccdc84 ccdc84 coding upstream 312056 2325547 ~ 2330541 (+)
LOC103045030 foxr1 coding upstream 317046 2320857 ~ 2325551 (+)
prkrip1 prkrip1,LOC106567678,LOC107600793 coding downstream 18964 2704314 ~ 2707975 (+)
LOC103040935 LOC103040935 coding downstream 27021 2712371 ~ 2719413 (+)
LOC103040420 rasa4,LOC108428505,LOC108260369,LOC107561580,LOC107744328,LOC107709756,LOC107691765 coding downstream 43944 2729294 ~ 2775073 (+)
clip2 clip2,LOC107709754,LOC107744329 coding downstream 94816 2780166 ~ 2834556 (+)
gtf2ird1 gtf2ird1,LOC107600764 coding downstream 151350 2836700 ~ 2867991 (+)
G15995 NA non-coding upstream 309341 2330822 ~ 2333256 (+)
G15963 NA non-coding upstream 457521 2184854 ~ 2185076 (+)
G15947 NA non-coding upstream 512317 2129879 ~ 2130280 (+)
G15940 NA non-coding upstream 540048 2102272 ~ 2102549 (+)
G15932 NA non-coding upstream 568759 2073539 ~ 2073838 (+)
G16113 NA non-coding downstream 1947 2687297 ~ 2688041 (+)
G16141 NA non-coding downstream 221578 2906928 ~ 2907676 (+)
G16204 NA non-coding downstream 330072 3015422 ~ 3016421 (+)
G16230 NA non-coding downstream 505062 3190412 ~ 3191314 (+)
G16229 NA non-coding downstream 506210 3191560 ~ 3201320 (+)
nrgn NA other upstream 471390 2150630 ~ 2171207 (+)
G15839 NA other upstream 960575 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 1113180 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 1301797 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 2521416 70784 ~ 121181 (+)
LOC103038305 NA other downstream 1830647 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 3483410 6168760 ~ 6177884 (+)
G16820 NA other downstream 3847046 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 4737221 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 5483489 8168839 ~ 8184837 (+)

Expression


Co-expression Network