ccdc84 (ccdc84)


Basic Information

Item Value
gene id ccdc84
gene name ccdc84
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 2325547 ~ 2330541 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245269.3
GTTAATCAGTTTGTTATTGTAATGCTCCTCCAAAGCAGTAGGCGGGAGTAAGGGTCATCTCGGAGTGTTTGAGAGATAAAGCTGGAGTGTTTTATGGCGGCGGTTACAGTGTTTGAGGAGTGAAATGGGGCCGTTTTATTGTGAAATATGTCGCCAAACCGACTTCTCAGGGAAGGGACACATCTATGGGAAGAGTCACCAGAGCAAACTTAAAGTCGTGCTGGTGAAATTCCTGGAGAAGGTGAAGGAGGCGCGGCGCTGTATTAAACGTCCTCAGGTGGAGAAGTTTGACGCTGTTGAACATGAGCAGAAGTTCTGGTGTTACTGCTGTCAGCAGGAGATACAGAAACATGTCACTGACGGCAGAGTCACCGTGCTGCACGGAGCCCTGCTGGAACACATGAGCACGCGAGAGCACCGCACCAAAACGCATGCGTTCTGGTGGAAAAACAAAGCAGATCCCAAGCTAAAGGAGAAATTCATCATCACAGAGGAAGAGGCTGAAAGGTTAAAGGAAGAAGTCGCCAAAACTCTGGAGCAATATGAAGAGAAAGAGGACACACTTCTAAAAGAGcAAGCTGACATTATCAGATCCCAGGAGCATCACAGGCTGGAGGTGTTGCAGTCTCTAAGAGAGCCTGATCCAGAGTCACAGGAGCCtgctgaacacaaccagcaggAAATGGAGCAGATGGCCTGCATGAGTTCGGACACTGCAACAAGCTTCTATGTTGCATCATATGGACATGCACAGCAGGCAGGACCCAGCCATGAGGACCCTTTCATGGAGGATCTTGGACACGGCCTGACCTTCATTGGCCATCAGGACTCCTCTGGATGTGGGAACATTCACACAGGAGCTGTGCCTCCATGGCTGCTTGAGGATCCTGAGGATGAGGAAGCGGACAGCTTGCAAAAGGAGATTGGCCCGTCTGTGCAGGAGTTCCTTAAACATAAAGAGCAAGAGAAGCTTAAAAAACTTCCGCCCAACCGGGTGGGGGCCAACTTTGACCACGGTTCTCACACTGATGCTAACTGGCTGCCCTCTTTTGGACGAGTGTGGAACAGTGGCAGGCGCTGGCAGTCTAGACACCAGTTCAGACAAGAGGAAGCACAAAGTggacaaaagagaaagagggagaatgGAAAGAAGGCAACAAAGAAGCAAAAACACCTCAGTAATGGAGATttataaacaacatttaaatgtgtgtgcgtgtgtatatatagtcaaGAATTTCAGGTACCTCAAGGTTAAAGTGTGTTCTGTTGGTTTGCTCTCACCTCTCTCCCTTCCAAGCAAATGGGAAATAGTCTgccaggg

Function

symbol description
ccdc84 Predicted to be involved in negative regulation of centrosome duplication and regulation of protein catabolic process. Predicted to be located in centrosome. Orthologous to human CENATAC (centrosomal AT-AC splicing factor).

NR:

description
PREDICTED: coiled-coil domain-containing protein 84

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245269.3 True 1324 mRNA 0.49 11 2325547 2330541

Neighbor

gene id symbol gene type direction distance location
upk2 NA coding upstream 7180 2315209 ~ 2318367 (+)
pou2f3 pou2f3,LOC107664296,LOC107691752,LOC107600771,LOC107556425,LOC107712933,LOC107744320 coding upstream 11247 2298591 ~ 2314300 (+)
LOC103038019 LOC108428643 coding upstream 30047 2281756 ~ 2295500 (+)
LOC103037703 LOC108427349,LOC108259736,LOC107664292,LOC107556423,LOC107600796,LOC107712935,LOC571737,LOC107744331 coding upstream 66208 2244461 ~ 2259339 (+)
slc37a2 slc37a2,LOC107691751 coding upstream 84660 2224036 ~ 2240887 (+)
derl2 derl2,LOC106567674 coding downstream 233262 2563803 ~ 2569599 (+)
LOC111191739 NA coding downstream 242910 2573451 ~ 2576652 (+)
rabep1 rabep1,LOC107691762 coding downstream 259038 2589579 ~ 2616863 (+)
LOC103041644 LOC103041644,LOC108428528,LOC107709757 coding downstream 312056 2642597 ~ 2685350 (+)
prkrip1 prkrip1,LOC106567678,LOC107600793 coding downstream 373773 2704314 ~ 2707975 (+)
G15963 NA non-coding upstream 140471 2184854 ~ 2185076 (+)
G15947 NA non-coding upstream 195267 2129879 ~ 2130280 (+)
G15940 NA non-coding upstream 222998 2102272 ~ 2102549 (+)
G15932 NA non-coding upstream 251709 2073539 ~ 2073838 (+)
G15920 NA non-coding upstream 330684 1994425 ~ 1994863 (+)
G15995 NA non-coding downstream 281 2330822 ~ 2333256 (+)
G16113 NA non-coding downstream 356756 2687297 ~ 2688041 (+)
G16141 NA non-coding downstream 576387 2906928 ~ 2907676 (+)
G16204 NA non-coding downstream 684881 3015422 ~ 3016421 (+)
G16230 NA non-coding downstream 859871 3190412 ~ 3191314 (+)
nrgn NA other upstream 154340 2150630 ~ 2171207 (+)
G15839 NA other upstream 643525 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 796130 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 984747 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 2204366 70784 ~ 121181 (+)
LOC103038305 NA other downstream 2185456 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 3838219 6168760 ~ 6177884 (+)
G16820 NA other downstream 4201855 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 5092030 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 5838298 8168839 ~ 8184837 (+)

Expression


Co-expression Network