sirt5 (sirt5,LOC107687181,LOC107712885,LOC107581456)


Basic Information

Item Value
gene id sirt5
gene name sirt5,LOC107687181,LOC107712885,LOC107581456
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72627240 ~ 72636248 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245314.3
GCTCCGGATCTGCTGTGTTTATATCGATGGCAGCAGGGCTGTGGGAGCTGGTGAGAGGAGCAGCTGTTTCCAGGTGGGGCGGAGAGCTGAGTATGGAGCGGAGGGGCAGGTTTATATGAGCGAGAGGAGACGCTGTGAGGTGTGACTGTTGACCCCTGATGTTTTTGCGGAGAGTGACCCATTGGGCGAAGACCTTTCACCTGTGTGCTGGGGTCAGACTTACCTATAGGGTACCTAATATGACCCGACCAAGCTCAGATTTGACACAGTTCCGGAAGGATTTTGCTAAGGCCAAGCACATAGCAATAATCACTGGAGCTGGAGTGAGTGCAGAGAGTGGTGTGCCAACATTTCGAGGTGCAGGGGGGTACTGGAGAAAATGGCAGGCTCAGGATTTGGCCACTCCTGGTGCGTTCTCACGAGATCCTTCTCTGGTGTGGGAGTTTTATCATTACAGGCGAGAGGTAATGAGTAGTAAAGAGCCGAATGCAGCCCACATGTCTATAGCTGAGTGTGAAGCAAGGCTCAGCCAGCAGGGGCGATCAGTAGTCGTCATCACTCAGAACATCGATGAGTTGCATTATCGCGCTGGCTCCAGAAACATACTGGAGCTCCATGGTAGTCTGTTTAAAACTCGCTGCATGAGCTGTGGTGAAGTGAAGGCCAACCACACAAGCCCTATATGTCCTGCTCTGGAGGGCAAAGGaGCACCTGACCCTGAAGCCAAGGAAGCTAGAATTCCAGTGAATGATCTTCCCAGATGCGAGAGGCGTGGCTGCCATGGTCTTTTGAGGCCTTATGTGGTGTGGTTTGGGGAGGCACTTGATTCTGACATTTTGAGCAGCGTTGAAGAGGAGCTGGAGAAGTGTGACCTCTGCTTAGTGGTGGGTACCTCCTCCATAGTTTACCCAGCAGCCATGTTTGCTCCTCAGGTGGCAGCTAGGGGAGTGCCTGTGGCCGAATTtaacacagaaagcacacctGCCACCATGCGCTTTATGTATCATTTTGAGGGTCCTTGTGGCACCATACTGCCCCCTGCACTGGCGCGTCATGAGAGCGAACCAATCTGAAAACCCACACCTGCCCTGCATGGAGCACTTTAAACAGAGAGGGCACAGGTCCACTCTCCGCTGATGCTTGTGTTCTTTTAAAAGCTGACCTTGTGTTCTTACTGACGTGAAGGCAAAACTGAAATATTTGGACAAAAATAAACCTCCCATTTGCCTTTGCCTTTGA
>XM_007245317.3
AATCAGGGGTCTGTGAATCAGTCAGTTatatcagcagcagcagggtttgtgttttattacagacaGGGGGGACAGCTCTACAGCTACAAGGTTAATAATAACAGAGCCTGTGTAGAGCTGTGTGAACAGACACACTTCAGCCTCGCGATACTATTGTATTAATGCCGGAGAGTCATCGCTAATGAATCTGACCCGGAAATAAGGAAATAACAGATAtataagacagacagacacagactgtGAAACACTGTTTTTACCTTAAAGCTGTGAGGTGTGACTGTTGACCCCTGATGTTTTTGCGGAGAGTGACCCATTGGGCGAAGACCTTTCACCTGTGTGCTGGGGTCAGACTTACCTATAGGGTACCTAATATGACCCGACCAAGCTCAGATTTGACACAGTTCCGGAAGGATTTTGCTAAGGCCAAGCACATAGCAATAATCACTGGAGCTGGAGTGAGTGCAGAGAGTGGTGTGCCAACATTTCGAGGTGCAGGGGGGTACTGGAGAAAATGGCAGGCTCAGGATTTGGCCACTCCTGGTGCGTTCTCACGAGATCCTTCTCTGGTGTGGGAGTTTTATCATTACAGGCGAGAGGTAATGAGTAGTAAAGAGCCGAATGCAGCCCACATGTCTATAGCTGAGTGTGAAGCAAGGCTCAGCCAGCAGGGGCGATCAGTAGTCGTCATCACTCAGAACATCGATGAGTTGCATTATCGCGCTGGCTCCAGAAACATACTGGAGCTCCATGGTAGTCTGTTTAAAACTCGCTGCATGAGCTGTGGTGAAGTGAAGGCCAACCACACAAGCCCTATATGTCCTGCTCTGGAGGGCAAAGGaGCACCTGACCCTGAAGCCAAGGAAGCTAGAATTCCAGTGAATGATCTTCCCAGATGCGAGAGGCGTGGCTGCCATGGTCTTTTGAGGCCTTATGTGGTGTGGTTTGGGGAGGCACTTGATTCTGACATTTTGAGCAGCGTTGAAGAGGAGCTGGAGAAGTGTGACCTCTGCTTAGTGGTGGGTACCTCCTCCATAGTTTACCCAGCAGCCATGTTTGCTCCTCAGGTGGCAGCTAGGGGAGTGCCTGTGGCCGAATTtaacacagaaagcacacctGCCACCATGCGCTTTATGTATCATTTTGAGGGTCCTTGTGGCACCATACTGCCCCCTGCACTGGCGCGTCATGAGAGCGAACCAATCTGAAAACCCACACCTGCCCTGCATGGAGCACTTTAAACAGAGAGGGCACAGGTCCACTCTCCGCTGATGCTTGTGTTCTTTTAAAAGCTGACCTTGTGTTCTTACTGACGTGAAGGCAAAACTGAAATATTTGGACAAAAATAAACCTCCCATTTGCCTTTGCCTTTGA

Function

symbol description
sirt5 Enables acyl binding activity and heterocyclic compound binding activity. Predicted to be involved in protein deacylation and regulation of ketone biosynthetic process. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol and mitochondrion. Is expressed in liver and retina. Orthologous to human SIRT5 (sirtuin 5).

NR:

description
PREDICTED: NAD-dependent protein deacylase sirtuin-5, mitochondrial isoform X1

GO:

id name namespace
GO:0036047 peptidyl-lysine demalonylation biological_process
GO:0036049 peptidyl-lysine desuccinylation biological_process
GO:0006476 protein deacetylation biological_process
GO:0005829 cytosol cellular_component
GO:0005739 mitochondrion cellular_component
GO:0036054 protein-malonyllysine demalonylase activity molecular_function
GO:0036055 protein-succinyllysine desuccinylase activity molecular_function
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11415 SIRT5, SIR2L5; NAD+-dependent protein deacetylase sirtuin 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245314.3 False 1239 mRNA 0.52 10 72627240 72636248
XM_007245317.3 True 1371 mRNA 0.49 10 72627475 72636248

Neighbor

gene id symbol gene type direction distance location
LOC103033168 si:ch211-121a2.4,LOC103033168,LOC108416079,LOC107581514,LOC108257924,LOC107687197,LOC107712847 coding upstream 17058 72604213 ~ 72610182 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding upstream 59785 72559357 ~ 72567455 (+)
LOC111191956 NA coding upstream 419104 72206947 ~ 72208136 (+)
plpp3 plpp3,LOC107712879,LOC107716555,LOC107697342,LOC107657212 coding upstream 542995 72036206 ~ 72084245 (+)
LOC107197929 NA coding upstream 629599 71988157 ~ 71997641 (+)
LOC111191362 LOC108416099,LOC107559745,LOC107712833,LOC108248366 coding downstream 18571 72654819 ~ 72679083 (+)
LOC103023468 vsnl1a,LOC103023468,LOC103379314,LOC107378186,LOC102798040,LOC104929407,LOC107553484 coding downstream 106770 72743018 ~ 72777057 (+)
tdrd6 NA coding downstream 150748 72786996 ~ 72803789 (+)
LOC103024428 LOC103024428,LOC108440977 coding downstream 179394 72815642 ~ 72822277 (+)
LOC103025272 LOC108440976 coding downstream 187311 72823559 ~ 72831615 (+)
G32644 NA non-coding upstream 555 72626396 ~ 72626685 (+)
G32630 NA non-coding upstream 31562 72565009 ~ 72595678 (+)
G32579 NA non-coding upstream 263899 72362951 ~ 72363341 (+)
G32570 NA non-coding upstream 304234 72322661 ~ 72323006 (+)
G32556 NA non-coding upstream 384429 72242485 ~ 72242811 (+)
G32713 NA non-coding downstream 61201 72697449 ~ 72697765 (+)
G32716 NA non-coding downstream 65274 72701522 ~ 72701806 (+)
G32769 NA non-coding downstream 205603 72841851 ~ 72844396 (+)
LOC111191374 NA non-coding downstream 240796 72877044 ~ 72877730 (+)
G32787 NA non-coding downstream 308566 72944814 ~ 72945464 (+)
G32641 NA other upstream 30303 72595906 ~ 72596937 (+)
usp24 usp24 other upstream 130176 72403534 ~ 72497064 (+)
dab1 dab1,LOC107581465 other upstream 646877 71463100 ~ 71980363 (+)
G32229 NA other upstream 1457684 71167524 ~ 71169556 (+)
G32225 NA other upstream 1486056 71137512 ~ 71141184 (+)
sf3b6 SF3B6,sf3b6,pm14 other downstream 145545 72781793 ~ 72786363 (+)
cd2ap cd2ap other downstream 508402 73144650 ~ 73196220 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other downstream 802808 73439056 ~ 73506987 (+)
selp NA other downstream 1352253 73988501 ~ 74016347 (+)

Expression


Co-expression Network