LOC103035417


Basic Information

Item Value
gene id LOC103035417
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43709728 ~ 43716198 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245326.3
aactaCACTTAGAGCTAAGAAGACCATGGAGAGCTCTTCATCTACAGCAGAAGACGCATGTCCAGTGTGTAGGGGTGCAATCACAGATCCTTCACAGCCGTCCCCATGCTGCAACAAAGTttttTGCAAGTCTTGTCTAGCCCAGTCCACCAGCATAAGGTACCACTGTCCACACTGCAGGACCCCCCTGCCTGGTCATGGTGCCCAAAGGCCTCGCAGGGCTGGACTCCTCATGCATCGTCTTCCAGGGCTGGCTGATGGCGATGGCTCTTTCAGGACTGCACAACCTGTTGGCAACAACATAAACGCTCTCATCAGCCAGCTAAGAGATGCACGCACACAATTAGAACAGATGTCCAGTTCTTCAGCTGGTGGCCCGGTCAGTCAGGCttctccagctccagctgcacAGGCCGCTCCTCCTCGTTTGGTCTTTCCTATTCTGAGAAGGCCAATTCCCAGACCACGTGCTCACCCCccagctgctgctcctgctcctCCACTGATCACTGCCATTAACCCTGTTGCTGCTGCAGCCCCCCCTGCACCACTGCCCCCAGCCCCAacaccagctccagctccagcaaacTCCAACCCTCATATAATTTCTGACTCCTCATCTGACGAGTTTGATGAAATGGCTTGGCGAACTGAAATTGAACTCATGGAACATGCCTCAGGACTGCCACCAGGCCCCATTGTGAGAACGTTTAAATGTCCGTACTGTCAGGAGGATGGACTGGATGACCTGGATCTGCGAGACCACTGCAATGACAACCATCTGAGTGACCCCAGACGTGTGgtgtgtcctgtgtgtgtgtcactgccTCATGGTGACCCACTGTTCCACAGCAGGGACTTCATCGGCCATCTCAACCTACGCCACTGCTACTACATTCAGGACATAACTAACGTCAACCAGAGTGATGAAGTCAACTTACAGGCTGCTTTACTGAGATCATTCTCAAACGCCAATTAAACTGTACACTTAccaaaaacatatttcaaaaaagaaaaatgacagGGATGAGAAACCTTTAAGTGCCTTTATTTCATTACATAATACAATGTATATATACGTTactcagctattaatgaaactGA

Function

GO:

id name namespace
GO:0098636 protein complex involved in cell adhesion cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0008305 integrin complex cellular_component
GO:0043235 receptor complex cellular_component
GO:0098802 plasma membrane signaling receptor complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245326.3 True 1104 mRNA 0.50 8 43709728 43716198

Neighbor

gene id symbol gene type direction distance location
LOC103035096 NA coding downstream 5759 43688898 ~ 43703969 (-)
LOC103034775 NA coding downstream 36738 43666847 ~ 43672990 (-)
LOC103027377 LOC108416125,LOC101075333,LOC106560396 coding downstream 44926 43599657 ~ 43664802 (-)
mgat2 mgat2,LOC107728126,LOC107564584,LOC107704380 coding downstream 353728 43350893 ~ 43356000 (-)
LOC103024454 hsp90aa1.1,LOC103024454,LOC108411468,LOC108257813,LOC107704377,LOC107557012,LOC107564585 coding downstream 368212 43336847 ~ 43341516 (-)
kifap3 kifap3,LOC107726482,LOC107732413 coding upstream 230781 43946979 ~ 43981364 (-)
slc25a24 slc25a24,LOC108439838,LOC107553450,LOC107732372,LOC107698372,LOC107696157,LOC107726490 coding upstream 485921 44202119 ~ 44219005 (-)
LOC103039281 si:ch211-63o20.7,LOC108439852,LOC108258100,LOC107732427,LOC107726431,LOC107698369 coding upstream 540253 44256451 ~ 44263193 (-)
LOC103040630 znf395 coding upstream 582749 44298947 ~ 44308698 (-)
LOC103028959 NA coding upstream 595056 44311254 ~ 44317837 (-)
G25903 NA non-coding downstream 225360 43484089 ~ 43484368 (-)
G25902 NA non-coding downstream 247574 43461669 ~ 43462154 (-)
G25874 NA non-coding downstream 346638 43360488 ~ 43363090 (-)
G25802 myh6,LOC103031694,LOC102786665,LOC780532,LOC108251423 non-coding downstream 530509 43172973 ~ 43179219 (-)
G25797 LOC108411385 non-coding downstream 538514 43160421 ~ 43171214 (-)
G25986 palld,LOC107755258,LOC106560254 non-coding upstream 150178 43866376 ~ 43885038 (-)
G26009 NA non-coding upstream 205678 43921876 ~ 43924352 (-)
G26024 NA non-coding upstream 284790 44000988 ~ 44001408 (-)
G26025 NA non-coding upstream 298942 44015140 ~ 44015348 (-)
G26031 NA non-coding upstream 319329 44035527 ~ 44035757 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other downstream 30866 43675025 ~ 43678862 (-)
LOC103027084 LOC108416115,LOC103358919 other downstream 192571 43495419 ~ 43517157 (-)
G25785 NA other downstream 598327 43098822 ~ 43111401 (-)
G25678 NA other downstream 991339 42717666 ~ 42718389 (-)
LOC111196586 LOC108262118 other downstream 1829304 41869024 ~ 41880424 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other upstream 174431 43890629 ~ 43899760 (-)
fkbp1b fkbp1b other upstream 1053066 44769264 ~ 44799505 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other upstream 1139901 44856099 ~ 44870690 (-)
G26295 atad2b,LOC107697175,LOC107603081 other upstream 1166580 44882778 ~ 44885801 (-)
G26388 NA other upstream 1719911 45436109 ~ 45437585 (-)

Expression


Co-expression Network