Gene
RNA
| Item | Value |
|---|---|
| gene id | G58558 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 14496936 ~ 14501514 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU66692 | False | 1800 | lncRNA | 0.47 | 2 | 14496936 | 14500246 |
| TU66694 | False | 1684 | TUCP | 0.45 | 2 | 14496936 | 14500423 |
| TU66693 | False | 1687 | lncRNA | 0.47 | 2 | 14497049 | 14500246 |
| TU66695 | True | 2662 | TUCP | 0.41 | 2 | 14497049 | 14501514 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_14474300_14474593 | NA | coding | upstream | 22166 | 14471796 ~ 14474770 (+) |
| CI01000009_14432830_14450364 | TWIST1.L, TWIST1, TWIST2, TWIST1B, TWIST1.S | coding | upstream | 45394 | 14432716 ~ 14451542 (+) |
| CI01000009_14380226_14386430 | ASB1 | coding | upstream | 110070 | 14380226 ~ 14386866 (+) |
| CI01000009_14348389_14374515 | TRAF3IP1 | coding | upstream | 121253 | 14348389 ~ 14375683 (+) |
| CI01000009_14296451_14314340 | ADARB1A, ADARB1B, ADARB1 | coding | upstream | 182587 | 14296451 ~ 14314349 (+) |
| CI01000009_14581261_14582899 | NA | coding | downstream | 80634 | 14580880 ~ 14582994 (+) |
| CI01000009_14595691_14611767 | NA | coding | downstream | 95190 | 14595436 ~ 14612569 (+) |
| CI01000009_14616605_14620028 | NA | coding | downstream | 115125 | 14615371 ~ 14620238 (+) |
| CI01000009_14659692_14664324 | NA | coding | downstream | 158933 | 14659179 ~ 14664333 (+) |
| CI01000009_14682045_14685381 | NA | coding | downstream | 181408 | 14681654 ~ 14685420 (+) |
| G58454 | NA | non-coding | upstream | 93354 | 14402649 ~ 14403582 (+) |
| G58447 | NA | non-coding | upstream | 94546 | 14393814 ~ 14402390 (+) |
| G58456 | NA | non-coding | upstream | 97585 | 14304940 ~ 14399351 (+) |
| CI01000009_14264935_14273006 | NA | non-coding | upstream | 219381 | 14263423 ~ 14277555 (+) |
| G58591 | NA | non-coding | downstream | 48004 | 14548250 ~ 14582261 (+) |
| G58568 | NA | non-coding | downstream | 73016 | 14573262 ~ 14584776 (+) |
| G58613 | NA | non-coding | downstream | 84810 | 14585056 ~ 14585281 (+) |
| G58614 | NA | non-coding | downstream | 85069 | 14585315 ~ 14585606 (+) |
| G58615 | NA | non-coding | downstream | 85444 | 14585690 ~ 14585910 (+) |
| G58455 | NA | other | upstream | 238410 | 14246695 ~ 14258526 (+) |
| G58382 | NA | other | upstream | 457035 | 14039757 ~ 14039901 (+) |
| G58028 | NA | other | upstream | 1353328 | 13140378 ~ 13143608 (+) |
| G57701 | NA | other | upstream | 1473798 | 13006643 ~ 13023138 (+) |
| G57691 | NA | other | upstream | 1578471 | 12906444 ~ 12918465 (+) |
| G58649 | NA | other | downstream | 149478 | 14649724 ~ 14652022 (+) |
| G58711 | NA | other | downstream | 266413 | 14766659 ~ 14773773 (+) |
| CI01000009_14857765_14859526 | NA | other | downstream | 318973 | 14857713 ~ 14859636 (+) |
| CI01000009_14925314_14952223 | NA | other | downstream | 424983 | 14924621 ~ 14952571 (+) |
| G60028 | NA | other | downstream | 851801 | 15352047 ~ 15376169 (+) |
