LOC103041948 (LOC108439850)


Basic Information

Item Value
gene id LOC103041948
gene name LOC108439850
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44321703 ~ 44324457 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245349.3
TTGTAGCAGTGCCTCCACTCTGAACAGCACAGCAACGTGCAGTGAAACTCCTCCTCCAGCATCTGAACCTGCTCAACTCGCTGATCTCCTCCCCAGACCAGCTGGACAACACCTAGAAACAAAACTGAGATTGCATTTTTCCTCTGAAGGGTGACCAGCCAGCTCGGTTACAGGGTTGTCAAGCTTCTGAGGCAGAACCCACCCAACATGTCAAGTGGAGCTTTAGGCCGTCTGAGCACTCTCACCCTCAGCATAAAGCAGCTGGCTGGCCTTCCCCGCCTGTCatactctctctcctccctgcCATCACCTCAAGACACAGTGGCTGCCTCAGATGTGCCTGTCCTGTTCCGCGAGCCCTACATCTTGTCAGGTTATCGTCCAGCAGGTCAGCCATGGTGCTGCTATATACTGAGCCTCTTCCAGCGCCACAATGAGTCACTAAATGTGTGGACACATTTGCTGGCAGTGCCAGTTGTGCTGCTGCGCTTCTGGTTCTTCGCTGCCTCTAATGACCTGGGTCAAGACGCCTCTTCACTGCCTCTGTGTCTCTATGCCTTGTCAGCCCTCACCTACCTCAGCTTCAGTGCTGCTGCCCACTTGCTGCAGTCACGATCAGTGTTAGCACATTACTCCCTCTTCTTTCTGGACTATGTGGGTGTGGCTGTATACCAGTATGGCTGTGCACTGGCCCACTACTTCTTCTGCTCTAAGGCAGCATGGAGGCAGAGCTTTGTGGGGGAGCTGTTCCTACCTGGAGCAGCCCTTCTAGGCTGGTTATCATGTGCCAGCTGCTGTTTCGCTAAACTACGCTACCAGCGGCCCTACCCACCCCACAGGAAGCTCTTCCAAATTGTGCCCACCAGCCTGGCCTACCTCCTGGATATCAGCCCCGTGGCCCACCGGCTGGCCACTGAGCCCTGGAATGAACCAGGGCTGGTGCTGCACGCGCTGCAGGTGCTCTTCTTCATGCAGGCCgccttcttcttctcctgtcCTGTGCCTGAACGATTTTTCCCAGGGAGGTGTGATATTGTGGGTCACGGCCACCAGATCTTTCACCTGTTCCTGGTCATGTGCACCATGTGCCAGATGGAGGCGGTGTGTAAAGACTTCTTAATGCAGCGACACTCTGTGTTGGAGGTGCATGGGGAGTGGGCCATTTTGTTAGCTGGAGGTTCTTTCTTTGCTCTGGTACTATGCAGTATTCTGACCGCAGCTCTTATGAGGAGGAGTGTTCAAAGGCAGCTACAAAAGAGGGAATGAAGGATGAATTAGACTGAAAAACATACAATGAATAACTCAGATCCCCAGTCAGTTCACAGGTTTGCTACATTCCAGCATAAAATACACCTCTACTGTAGTCTCAGCCTCAGGTTTTCAACTTGTATACATGTAAATGCTGCATCTTACACAGGTTATACTGTGCACAAGGGTGTTTTGTCAGTTGCATTCTGATTGGTTATCTACATTAGAGAATCATGAGAAAACTGTTGATTACAGTTATGTGCAAAAGTCTGAAAATAGGCACAACATTTATCCTGGTAATAAGTGTATTTATacgtacagaaaaaaaaacaccatttattattagaataaatgcagatataataaaattagTACTAGTAAGAAATGCACTGATTTGATTCCAGGGATGGAGTACTGACCAGGCCAGTGGGAGCCAATGTTCAGAGCATAAACAGTTCAACATTGttcaaacacttttatttttatacaattataaaatatacacagaAGATTCAACAGTGATCATTTAACGTTTTTCAGACAACAGGAGCACACTTGATTTTAACCAGGTGTTgcattaaaactaataaaactggACTTAATTTGCATTTGTCTGAGCAAATAAACACTCACTGACTAgacaattaa
>XM_015604821.2
TTGTAGCAGTGCCTCCACTCTGAACAGCACAGCAACGTGCAGTGAAACTCCTCCTCCAGCATCTGAACCTGCTCAACTCGCTGATCTCCTCCCCAGACCAGCTGGACAACACCTAGAAACAAAACTGAGATTGCATTTTTCCTCTGAAGGGTGACCAGCCAGCTCGGTTACAGGGTTGTCAAGCTTCTGAGGCAGGAGTCCCCAAGGACACCTTTTTCTGCCACACCTGTTTGCTCAGCCTTTAtttttcacctgctgttgtcaTTTTCTCACAGAACCCACCCAACATGTCAAGTGGAGCTTTAGGCCGTCTGAGCACTCTCACCCTCAGCATAAAGCAGCTGGCTGGCCTTCCCCGCCTGTCatactctctctcctccctgcCATCACCTCAAGACACAGTGGCTGCCTCAGATGTGCCTGTCCTGTTCCGCGAGCCCTACATCTTGTCAGGTTATCGTCCAGCAGGTCAGCCATGGTGCTGCTATATACTGAGCCTCTTCCAGCGCCACAATGAGTCACTAAATGTGTGGACACATTTGCTGGCAGTGCCAGTTGTGCTGCTGCGCTTCTGGTTCTTCGCTGCCTCTAATGACCTGGGTCAAGACGCCTCTTCACTGCCTCTGTGTCTCTATGCCTTGTCAGCCCTCACCTACCTCAGCTTCAGTGCTGCTGCCCACTTGCTGCAGTCACGATCAGTGTTAGCACATTACTCCCTCTTCTTTCTGGACTATGTGGGTGTGGCTGTATACCAGTATGGCTGTGCACTGGCCCACTACTTCTTCTGCTCTAAGGCAGCATGGAGGCAGAGCTTTGTGGGGGAGCTGTTCCTACCTGGAGCAGCCCTTCTAGGCTGGTTATCATGTGCCAGCTGCTGTTTCGCTAAACTACGCTACCAGCGGCCCTACCCACCCCACAGGAAGCTCTTCCAAATTGTGCCCACCAGCCTGGCCTACCTCCTGGATATCAGCCCCGTGGCCCACCGGCTGGCCACTGAGCCCTGGAATGAACCAGGGCTGGTGCTGCACGCGCTGCAGGTGCTCTTCTTCATGCAGGCCgccttcttcttctcctgtcCTGTGCCTGAACGATTTTTCCCAGGGAGGTGTGATATTGTGGGTCACGGCCACCAGATCTTTCACCTGTTCCTGGTCATGTGCACCATGTGCCAGATGGAGGCGGTGTGTAAAGACTTCTTAATGCAGCGACACTCTGTGTTGGAGGTGCATGGGGAGTGGGCCATTTTGTTAGCTGGAGGTTCTTTCTTTGCTCTGGTACTATGCAGTATTCTGACCGCAGCTCTTATGAGGAGGAGTGTTCAAAGGCAGCTACAAAAGAGGGAATGAAGGATGAATTAGACTGAAAAACATACAATGAATAACTCAGATCCCCAGTCAGTTCACAGGTTTGCTACATTCCAGCATAAAATACACCTCTACTGTAGTCTCAGCCTCAGGTTTTCAACTTGTATACATGTAAATGCTGCATCTTACACAGGTTATACTGTGCACAAGGGTGTTTTGTCAGTTGCATTCTGATTGGTTATCTACATTAGAGAATCATGAGAAAACTGTTGATTACAGTTATGTGCAAAAGTCTGAAAATAGGCACAACATTTATCCTGGTAATAAGTGTATTTATacgtacagaaaaaaaaacaccatttattattagaataaatgcagatataataaaattagTACTAGTAAGAAATGCACTGATTTGATTCCAGGGATGGAGTACTGACCAGGCCAGTGGGAGCCAATGTTCAGAGCATAAACAGTTCAACATTGttcaaacacttttatttttatacaattataaaatatacacagaAGATTCAACAGTGATCATTTAACGTTTTTCAGACAACAGGAGCACACTTGATTTTAACCAGGTGTTgcattaaaactaataaaactggACTTAATTTGCATTTGTCTGAGCAAATAAACACTCACTGACTAgacaattaa

Function

NR:

description
PREDICTED: membrane progestin receptor beta-like

GO:

id name namespace
GO:0048545 response to steroid hormone biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005496 steroid binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245349.3 False 1896 mRNA 0.48 2 44321703 44324457
XM_015604821.2 True 1976 mRNA 0.48 2 44321703 44324457

Neighbor

gene id symbol gene type direction distance location
LOC103028959 NA coding downstream 3866 44311254 ~ 44317837 (-)
LOC103040630 znf395 coding downstream 13005 44298947 ~ 44308698 (-)
LOC103039281 si:ch211-63o20.7,LOC108439852,LOC108258100,LOC107732427,LOC107726431,LOC107698369 coding downstream 58510 44256451 ~ 44263193 (-)
slc25a24 slc25a24,LOC108439838,LOC107553450,LOC107732372,LOC107698372,LOC107696157,LOC107726490 coding downstream 102698 44202119 ~ 44219005 (-)
kifap3 kifap3,LOC107726482,LOC107732413 coding downstream 340339 43946979 ~ 43981364 (-)
LOC103042571 stmn4,LOC108439832,LOC108257558 coding upstream 35642 44360099 ~ 44367840 (-)
LOC103028241 runx2b,runx2,LOC103028241,LOC108410521,LOC108258149,LOC107678859,LOC107726745 coding upstream 201429 44525886 ~ 44575275 (-)
mut mut,LOC107726757,LOC107697172,LOC107726528 coding upstream 412710 44737167 ~ 44760205 (-)
LOC103027014 mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding upstream 484369 44808826 ~ 44851093 (-)
klhl29 klhl29,LOC107667613,LOC107742703,LOC107697176 coding upstream 658787 44983244 ~ 45315255 (-)
G26084 elp3,LOC107732362,LOC107698368,LOC107553498,LOC107696156,LOC107599080 non-coding downstream 97430 44221013 ~ 44224273 (-)
G26083 NA non-coding downstream 123225 44195249 ~ 44198478 (-)
G26038 NA non-coding downstream 265404 44054940 ~ 44056299 (-)
G26032 NA non-coding downstream 283866 44037302 ~ 44037837 (-)
G26031 NA non-coding downstream 285946 44035527 ~ 44035757 (-)
G26154 NA non-coding upstream 52866 44377323 ~ 44377527 (-)
G26158 cdc42bpb,LOC106607646 non-coding upstream 117204 44441661 ~ 44444962 (-)
LOC111197214 NA non-coding upstream 289753 44614210 ~ 44615581 (-)
G26238 NA non-coding upstream 358731 44683188 ~ 44688822 (-)
G26240 NA non-coding upstream 373954 44698411 ~ 44698915 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 421943 43890629 ~ 43899760 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other downstream 642841 43675025 ~ 43678862 (-)
LOC103027084 LOC108416115,LOC103358919 other downstream 804546 43495419 ~ 43517157 (-)
G25785 NA other downstream 1210302 43098822 ~ 43111401 (-)
G25678 NA other downstream 1603314 42717666 ~ 42718389 (-)
fkbp1b fkbp1b other upstream 444807 44769264 ~ 44799505 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other upstream 531642 44856099 ~ 44870690 (-)
G26295 atad2b,LOC107697175,LOC107603081 other upstream 558321 44882778 ~ 44885801 (-)
G26388 NA other upstream 1111652 45436109 ~ 45437585 (-)
G26588 NA other upstream 1610696 45935153 ~ 45935622 (-)

Expression


Co-expression Network