LOC103042260


Basic Information

Item Value
gene id LOC103042260
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44357276 ~ 44359403 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245350.3
TCTGAAGCCCTCATTGAATGGAGTAGAGATACACTGAGAGGAAGGACCAGAGCATCAACTGTGAATTAACAGCGAATCACATTCTCAGAGGATGCAGCTCTCAACGtttttcagGACTGTGCTGGTGCTTGGCTTGGTGGTGGTGTTGCTGGGAGAAGTCTGCTCTTCTGCAAAGAGTAGCGGTggtaaaaagaaaggaaagtgTAAGGCTCCAGCTGTgcagaaaaaacaaaataagggCTGTCGAGGGAAGGCGAGGAAACTCTGCCTCACTGTGGACCCTGCTGTGATACACTTTACAGATTCCAGCCCCGTAGCTCCAGATCGCTCCATCTCACCCTGGACATATGAAGAATATTATGATGAATCCCGCATCCCTAGCCGCATCTTTCAGGCAAAGTGTAAGAAAACAGGCTGTATGACCAAAGATGGACACGAAGACATTGGGCTAAAATCTAAACCTATCTACTACCAGATCCTGGTGCTCAAGAGAATGAAGGGCGAAAATAATTCATACTACTTCCAGCTGGAGACAATGAATGTCAGTGTGGGCTGCACATGTGTTAAACCCTTTGTCATTTCTCAGAAGGAGTAATACTGCTGTTTCTGGTACGGTGTTCCGCTACTGTCAAATGTAACAACGTAGCTTCTAGAGGACTTCTGTCCTCtacagtatatcagactgtatttATTGCTTATACATAGCACCAGTCAAGGCTTTGGCAGCAGTGTGTTTAGCATATTTTGGAACCTTATATGAATCTGTACTAACAGCCAAGGATCAAGGTCTGACATGTTGTGAATagatttcaatttaaaagagtCCATGCTGATTGTGTCACAGACGctttaaaatctgtgtaaaCCTTACTGTGCTACTTTAACTTATGAAGAATCTAAAtgacatatactgaacatcctgagagcatcacaggacagtgaTCATGTGATCTTATTTAGAGAATGTAGGAGTGGTGGGTTAGAGCTTCCACAGCTTCTACAGctctttaaatttaatttaaatgctttaattgtATGTTTTATGGTACAAATAACTAGTTCCGACCTGTTttctagaaataaataaaatataagttaTGAAA

Function

GO:

id name namespace
GO:0071222 cellular response to lipopolysaccharide biological_process

KEGG:

id description
K05494 IL17F, ML1; interleukin 17F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245350.3 True 1103 mRNA 0.41 3 44357276 44359403

Neighbor

gene id symbol gene type direction distance location
LOC103041645 mcm3,LOC107732373,LOC107698330 coding upstream 9620 44339246 ~ 44347656 (+)
pnoc pnoc coding upstream 59557 44281122 ~ 44297719 (+)
elp3 elp3,LOC107696156,LOC107698368,LOC107599080 coding upstream 103044 44219205 ~ 44254232 (+)
LOC103028637 LOC108439839 coding upstream 161394 44077827 ~ 44195882 (+)
prrx1 prrx1,prrx1b,LOC108439841,LOC107553451,LOC107698373,LOC108257538 coding upstream 300954 44041765 ~ 44056322 (+)
cdc42bpb cdc42bpb,LOC107684799,LOC106571112,LOC107746049 coding downstream 58035 44417438 ~ 44460259 (+)
vipas39 vipas39,LOC107723381,LOC107746035,LOC107701516 coding downstream 101282 44460685 ~ 44471931 (+)
LOC103046392 LOC103046392,LOC108414880 coding downstream 114745 44474148 ~ 44479904 (+)
LOC111191907 opn8a,LOC108410511,LOC107678826,LOC107726748,LOC107549662,LOC107743142 coding downstream 313727 44673130 ~ 44693172 (+)
LOC111197225 LOC108410507 coding downstream 350970 44710373 ~ 44727205 (+)
G26107 LOC108439850 non-coding upstream 33454 44319986 ~ 44323822 (+)
G26088 NA non-coding upstream 84772 44272294 ~ 44272504 (+)
G26043 si:ch211-63o20.7,LOC108439852,LOC108258100,LOC107732427,LOC107698369,LOC107726431,LOC107599081 non-coding upstream 94074 44256473 ~ 44263202 (+)
G26039 NA non-coding upstream 154742 44107941 ~ 44202534 (+)
G25956 NA non-coding upstream 433007 43921539 ~ 43924269 (+)
G26121 NA non-coding downstream 5189 44364592 ~ 44367931 (+)
G26124 NA non-coding downstream 17922 44377325 ~ 44377527 (+)
G26202 NA non-coding downstream 323785 44683188 ~ 44688403 (+)
G26216 NA non-coding downstream 376431 44735834 ~ 44736653 (+)
G26217 NA non-coding downstream 377764 44737167 ~ 44738115 (+)
LOC103033920 LOC108416105 other upstream 862960 43490323 ~ 43494316 (+)
G25880 NA other upstream 932370 43424392 ~ 43424906 (+)
G25879 NA other upstream 935230 43421771 ~ 43422046 (+)
rps29 NA other upstream 993832 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 1095177 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 2168965 46528368 ~ 46549553 (+)
G26915 NA other downstream 3918864 48278267 ~ 48315894 (+)
G26995 NA other downstream 4196394 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 4219400 48578803 ~ 48618075 (+)
G27075 NA other downstream 4381811 48741214 ~ 48742439 (+)

Expression


Co-expression Network