LOC103042571 (stmn4,LOC108439832,LOC108257558)


Basic Information

Item Value
gene id LOC103042571
gene name stmn4,LOC108439832,LOC108257558
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44360099 ~ 44367840 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245351.3
CGAGGAGCAGCAGATACTGAGAGAAACCactataaagagagagaggcatagAGACACTGAGGGAggcagaacgagagagagagagagagacagagagagggaaggcAGGATAAGGACTACGTATATTTCTGGGGAGAGAAGGATAAAAGCTGAGCGTTTGCGAATTTGCTCCTTACTGAGTGAGAAAGAAGAACAGACAGAATGACTCTGACAGCCTACCTAGAAAAGCTGAAGGAGCTCCCTCTAGTGTCCCGCTTCTGCATCTGCATCAGCACCATTCCTGCAGACCAGCAAGTGTACAAGGCTGAAGACGCTGTAGACCTCAACTGGTGTGAGATTAAAGATGTGGAGGTGATTGAGCTGAACAAGCGAGCCTCTGGTCAGGCATTTGAGGTGATCCTAAAGCCTCCATCATTCGATGGTCTACCTGAGCTGAATACCTCCATGCCCCATCGCAAGGACCCCTCACTGGAGGAGATCCAGAAGAAGCTGGAGGCTGCTGAGGAAAGACGAAAGTGCCAGGAGGCAGAGCTGCTGAAGCACCTGGCGGAGAAAAGAGAGCACGAGAGGGAGGTCATCCAGAAGGCCTTTGAGGAGAACAACAACTTCATTAAGAATGCCAAGGAGAAGCTGGAGCAGAAAATGGAGGCCAACAAGGAGAATCGCGAGGCCTTGCTGGCAGCCATGCTGGAGAGGCTTCAGGAAAAGGACAAGCACGCTGAAGAAGTGAGGAAGAATAAGGAGCTGAAGGAAGAAGCTTGTCGGTAAAGGAGTGAGTAGAGGAGGACTGCTTTGGCttgccaaaagaaaaaaaaaaaacaagatgtgGAGAGGGAACGAGGAGAATGAAGAATGTATGAAGCATTGGAGAGTCATGGACAATGCTATTATTGACTATTTGAAACACACTAAATCTTTTTTGTGGGGTTTAACAATGTCAAAACTAAGTAATTTCATGAAAAAAGACCAAAAGATGCCTGTTTTCTTCTAGATGGCACTGCAAGGTGCACCCAAGCTCTAGTACTAAAGCGTGTACGGCAAAGAAAAAACGAAAGTTTGACAAACTGCAGTCTGAGCTAATGGTGTAGAGGACTGGTTGAAAAGAAATAATGAGGAAATTTTTAGGGCTACATCTGAGTCCAGTTGAGTGGAGATGTTAACCAAAAAAGAACAGAACCCACACATCGAAATAAGCTTTTCCTTCCCTCAAATCTATAGAGCCTAGCAAATTATAAGCTGTGCATGCTAATTCACAGATCAGTTGCTGGAGAATGAACACATGCTTTGTCAATAAAATGCAGCATTTATAATGGATTCATTCACATTGCCTTTGACCTCTAAGGAGCATTAAGTCATGATAATCCATTTTGGGAGTCAGACTTTTTTTTGCCTTGATGATTATTATGCGGCTCATAACTATTAGCCGGTTCAAAGTTAACTAAAGCTTAAAAACTTAAGCACAATCCAAAAGCACATAGCTAATAgtcttttctttgcatcatgCACGAATGACAGGTAAAAAACTGATCACGTCTCAGCGAAAATGTAGAGCAGTGACGTAGTAAGGGAGACTGAGAAGCTGCCACGGTATCAGATGGAAATGGTGCACTTTGTTCTGGCATGAAATTGTGTTTAATTCTTTGCGTCAGTCGTGTTCAATACTTGTACCTGTTAACTGCAAATGACtgaagagtgatttatttgtgTTCAAAAACTCAAGAAAAATGACATCTGTGATGAGAATGGATGTGAATTGGTCAGGAGGCACATTTGTATAAATTGGACCCCACCTGCTGCCTATGTTTGTGGTTGCCCTAAAGCCTAACTGTCTCTGTTTTGACATGGCCAGTAAAATCTTCTCTTGACCTAACAA

Function

symbol description
stmn4 Predicted to enable tubulin binding activity. Acts upstream of or within regulation of cell cycle G2/M phase transition and regulation of neuron differentiation. Located in Golgi apparatus. Is expressed in midbrain neural keel; nervous system; and neural tube. Orthologous to human STMN4 (stathmin 4).

NR:

description
stathmin-4

GO:

id name namespace
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245351.3 True 1873 mRNA 0.44 6 44360099 44367840

Neighbor

gene id symbol gene type direction distance location
LOC103041948 LOC108439850 coding downstream 35642 44321703 ~ 44324457 (-)
LOC103028959 NA coding downstream 42262 44311254 ~ 44317837 (-)
LOC103040630 znf395 coding downstream 51401 44298947 ~ 44308698 (-)
LOC103039281 si:ch211-63o20.7,LOC108439852,LOC108258100,LOC107732427,LOC107726431,LOC107698369 coding downstream 96906 44256451 ~ 44263193 (-)
slc25a24 slc25a24,LOC108439838,LOC107553450,LOC107732372,LOC107698372,LOC107696157,LOC107726490 coding downstream 141094 44202119 ~ 44219005 (-)
LOC103028241 runx2b,runx2,LOC103028241,LOC108410521,LOC108258149,LOC107678859,LOC107726745 coding upstream 158046 44525886 ~ 44575275 (-)
mut mut,LOC107726757,LOC107697172,LOC107726528 coding upstream 369327 44737167 ~ 44760205 (-)
LOC103027014 mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding upstream 440986 44808826 ~ 44851093 (-)
klhl29 klhl29,LOC107667613,LOC107742703,LOC107697176 coding upstream 615404 44983244 ~ 45315255 (-)
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding upstream 991070 45358910 ~ 45365846 (-)
G26084 elp3,LOC107732362,LOC107698368,LOC107553498,LOC107696156,LOC107599080 non-coding downstream 135826 44221013 ~ 44224273 (-)
G26083 NA non-coding downstream 161621 44195249 ~ 44198478 (-)
G26038 NA non-coding downstream 303800 44054940 ~ 44056299 (-)
G26032 NA non-coding downstream 322262 44037302 ~ 44037837 (-)
G26031 NA non-coding downstream 324342 44035527 ~ 44035757 (-)
G26154 NA non-coding upstream 9483 44377323 ~ 44377527 (-)
G26158 cdc42bpb,LOC106607646 non-coding upstream 73821 44441661 ~ 44444962 (-)
LOC111197214 NA non-coding upstream 246370 44614210 ~ 44615581 (-)
G26238 NA non-coding upstream 315348 44683188 ~ 44688822 (-)
G26240 NA non-coding upstream 330571 44698411 ~ 44698915 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 460339 43890629 ~ 43899760 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other downstream 681237 43675025 ~ 43678862 (-)
LOC103027084 LOC108416115,LOC103358919 other downstream 842942 43495419 ~ 43517157 (-)
G25785 NA other downstream 1248698 43098822 ~ 43111401 (-)
G25678 NA other downstream 1641710 42717666 ~ 42718389 (-)
fkbp1b fkbp1b other upstream 401424 44769264 ~ 44799505 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other upstream 488259 44856099 ~ 44870690 (-)
G26295 atad2b,LOC107697175,LOC107603081 other upstream 514938 44882778 ~ 44885801 (-)
G26388 NA other upstream 1068269 45436109 ~ 45437585 (-)
G26588 NA other upstream 1567313 45935153 ~ 45935622 (-)

Expression


Co-expression Network