LOC103023468 (vsnl1a,LOC103023468,LOC103379314,LOC107378186,LOC102798040,LOC104929407,LOC107553484)


Basic Information

Item Value
gene id LOC103023468
gene name vsnl1a,LOC103023468,LOC103379314,LOC107378186,LOC102798040,LOC104929407,LOC107553484
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72743018 ~ 72777057 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245378.3
aggctcctGGCTGAGCTCCATTGTCTCCCTCAGTGTCCCTTCATCTACCGCACGGACGACTAGCTTGTCTCCTCCTTTCCACGGCAGCTCTCCTCTCACCTCcaaggaaaaacacacacactcactcgccGCAGCCGCCTGCAGCTTTACCGAGCGCTTTGAAGCAGCACTCACCTCTGCACTGCTGCTCCAAGCAGAAAAACACCTCCgttcttccttcttcttcttcttcttcttcttcgtcttctccttcttctcgtAAAGAGACGCCATGGGGAAACAGAACAGCAAGCTGACCCCTGAGGTGCTGGAGGACCTGGTGAAGAGCACAGAGTTTAACGAGCATGAGCTCAAGCAATGGTACAAAGGCTTTCTGAAGGACTGCCCCAGTGGCCGTCTCAACCTGGATGAGTTCCAGCAGCTCTATGTCAAGTTTTTTCCCTATGGTGACGCATCAAAGTTTGCCCAGCACGCCTTCAGGACctttgacaaaaatggagatggcACCATTGACTTCAGGGAGTTTATCTGCGCCCTTTCAATCACATCGCGGGGCAGCTTTGAACAGAAACTCAACTGGGCCTTCAACATGTATGACTTGGATGGAGATGGCAAGATCACACGAGTGGAGATGCTGGAAATCATTGAAGCCATTTACAAGATGGTGGGCACCGTGATCATGATGAAGATGAACGAGGATGGCCTGACGCCCGAGCAGCGGGTCGACAAAATCTTCAGTAAGATGGATAAGAACAACGATGACCAGATCTCGTTGGAGGAGTTCAAAGAGGCAGCAAAGAGTGACCCGTCCATTGTATTACTGCTGCAGTGTGACCTGCAAAAATAAGGGCGGCATCCGAGGGAACGCCAAAGGACTGCACAGAAGATTAATGTTCCATTCAGTTTGCAGCTATTTCCACTGAAAAAATTTGCTTGGACTACCTTTCAATGGATCCGCTTCCTGTGTTTGAAACACTTGTGTGCATGAGAATGTTCTTTGCTAACAAATTttacacatgcacgcacacaagcacacacctcctcacacaccacacagacacacacaaacacacacacacacacacatacagacactaCAAGCTCATACAGAACATACCACGCACAAATAGAGttctacaaatataaatataaacatataaatatgaatataaatatatatatttaagttgtTCAAATAAACTGCCAAAATGTGAACAGTGTGCAAAGGTACTTTCCATACAGTCTCATTCCACTGAAGCTTGCACATCACTGATGTGCTCTGTTTAATTAAGCTACTATTTATTGTTCAACTTCTCTGATGCTAGCTATGTGTATCATAATACTGTGTGACGTCATCCAAATCAGTTCCTATGATAATGGCAACTGTTTCAGGTGACCCATTTCTACGTTGTTCGAGcagaaagaaaatgtattctTTTCCATCTTCAAACGTGCTCGTACTGTCGGTGAATATAAACAAGTAGTTTATTTGCATGCCATTAGGTCTGCCTTAAAAATGCTAAAGAAATACTGAAGACAAagccttataaaaaaaaaagaaacaagtcTGGGTAAGTAAACCATTAGAAAGGCCTGTTTCACTAGGATATGCAAATCCTTTGATGATGTGAGGGATGTATTTTATGCTGATCCATTCATcatttctgaatctgtttttgGCACCTGTGGGACAATGGTTTCTCATATGGTTTATAGCCATTTATTTGGCATTGTGCACATGGCAGGCAAAGCAGAAATGAATGTGGCTGATAAAGCAATGTAGAACTAAGAGCTGAGGTGAAATCTAAGCAAGGCAATtatgaaatatgtgtatgtgtgtattccCAGTTGCACCGTTTAACAGTGCATTGAAAACATTCCTTTTTTATTAGTCTTTACTGCAAGCTATGTGCGCAAAATGACCAAGTGTGGCAATGGTACAGATAAAATATAGGTACTGGGGCAAATTCTGGGTCACAATTGTAATGAAAGAAAAAggtagaaacatttaaaaatgaaatgatttGGTGGTATATAGTCTGTTGATATTCAAAGAGTGTGGAGCTTTCAGATTTAACCACCCACTTTGACAGGTCACTGACTGATGTATTTTACCATGGTGTATTAACGGGAGTGTGGAATCTGAAAGGCTCTTTTCTTGTAACAATGCCAAATGCAGAGATTACTCTGCAAGTTTACgcttattatgattattattggtTTACTTTAATGCAGATGAGACTAGCATGTGTGTAATATGTTgacatacagatacagatatttGCACCAAGAGAAACTAGCATAGTTATGGGAGATTTGATTTTACACTGTGAATTTGGCATGATGTTTTAATTACGCAAAATACATTTCGGCAACCCAACTGATcggctaaagaaaaaaaaattgagatttgAAATGAATATGTTTAATGAATAAAGCCCTTGAGGATTTAGTGCAAGTATTCAATATTTCCTAAAGTAACACTTATTGCAGTAACTAAGTAGAATTATCAGTGTTTCCCAACCCTAAGTATGGGTCTGCTGTGTTGCAAAGTATTTCATGTTTTCTTCTTAATATACAGGGCTGCATATCACTTCATAGGAATACTTTTGTTTAATCAAAATGTTTACTTGGGTTAGGAGTCCGAATTGTATCTTTTAGTTGAAATCTTTTCATCTGATATGTTTTGTGTTATTCTGAAAGAGTTATTTAAAGCTCCTCTTTTATTCCTACCTATGGTGTTTACACAGATCTAACACAGAAATTGTCAGAGGAAATGTGTTTAATCTTGCTTTGGAGATTTGCCTAGCCCAATGTCATCATCAGCATAATGTCATCATtacaaatgtatattttctctGCATCaactgcttatttatttattcactgacTGACACCCCTGGTTCCATGTCATGATTAAAAGCTTTTTGCACCTATGTGATTTCACATGTTTACCTAACTGGCCTCTCACCAAAATTCATCCAATGCCAACCAGTTTGgttttgaattattttgtacatgtagCATGTATTGTGCCCCTGATGCCATGGCTGCACTActccttgtgttgtggtttaaactaataaaataatatatgggCCTGTT

Function

symbol description
vsnl1a Predicted to enable calcium ion binding activity. Orthologous to human VSNL1 (visinin like 1).

NR:

description
visinin-like protein 1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19936 VSNL1; visinin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245378.3 True 3105 mRNA 0.40 4 72743018 72777057

Neighbor

gene id symbol gene type direction distance location
LOC111191362 LOC108416099,LOC107559745,LOC107712833,LOC108248366 coding upstream 63935 72654819 ~ 72679083 (+)
sirt5 sirt5,LOC107687181,LOC107712885,LOC107581456 coding upstream 106770 72627240 ~ 72636248 (+)
LOC103033168 si:ch211-121a2.4,LOC103033168,LOC108416079,LOC107581514,LOC108257924,LOC107687197,LOC107712847 coding upstream 132836 72604213 ~ 72610182 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding upstream 175563 72559357 ~ 72567455 (+)
LOC111191956 NA coding upstream 534882 72206947 ~ 72208136 (+)
tdrd6 NA coding downstream 9939 72786996 ~ 72803789 (+)
LOC103024428 LOC103024428,LOC108440977 coding downstream 38585 72815642 ~ 72822277 (+)
LOC103025272 LOC108440976 coding downstream 46502 72823559 ~ 72831615 (+)
LOC103025777 mep1a coding downstream 56356 72833413 ~ 72847814 (+)
opn5 opn5 coding downstream 442469 73219526 ~ 73247185 (+)
G32716 NA non-coding upstream 41212 72701522 ~ 72701806 (+)
G32713 NA non-coding upstream 45253 72697449 ~ 72697765 (+)
G32644 NA non-coding upstream 116333 72626396 ~ 72626685 (+)
G32630 NA non-coding upstream 147340 72565009 ~ 72595678 (+)
G32579 NA non-coding upstream 379677 72362951 ~ 72363341 (+)
G32769 NA non-coding downstream 64794 72841851 ~ 72844396 (+)
LOC111191374 NA non-coding downstream 99987 72877044 ~ 72877730 (+)
G32787 NA non-coding downstream 167757 72944814 ~ 72945464 (+)
G32793 NA non-coding downstream 203955 72981012 ~ 72984863 (+)
G32778 NA non-coding downstream 269945 73047002 ~ 73079574 (+)
G32641 NA other upstream 146081 72595906 ~ 72596937 (+)
usp24 usp24 other upstream 245954 72403534 ~ 72497064 (+)
dab1 dab1,LOC107581465 other upstream 762655 71463100 ~ 71980363 (+)
G32229 NA other upstream 1573462 71167524 ~ 71169556 (+)
G32225 NA other upstream 1601834 71137512 ~ 71141184 (+)
sf3b6 SF3B6,sf3b6,pm14 other downstream 4736 72781793 ~ 72786363 (+)
cd2ap cd2ap other downstream 367593 73144650 ~ 73196220 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other downstream 661999 73439056 ~ 73506987 (+)
selp NA other downstream 1211444 73988501 ~ 74016347 (+)

Expression


Co-expression Network