LOC103032852 (lbr)


Basic Information

Item Value
gene id LOC103032852
gene name lbr
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73630251 ~ 73639424 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245411.3
ACTCTGGTAGGTTgctgagtgagagagggaggaacgGGCGCTGCGCCGGGAcggtattatttttaatatatatatttttataagttGTATGAACTGAAGGCGAGGGCGCTGCGTATTAAACAACCGTGTTTCCGCACCCAGGTAAAAGATGCCGACTGTCAGGTTTCAGGCTGGAGATACTGTGATGGGCCGCTGGCCTGGCAGTAACCTTTATTACGAGGTTAAGGTTCTGAGTTTTGATGCCAAGACTCTTCTTTACACCGTCATCTACAAAGATGGCacagagctggagctgagggaTGCAGACATTAAGAGTCTAGCTGGATTTAAGCAAGGTCTTGCCCGCTCTCGTTCCCGCTCCCGTTCTCGCTCACCGGCCCGCACCCGCAGAAGTCGCTCTCGTTCACCAGCCAGGACTTCCCGCCGCTCTTCATCCCGCACCACAGAGGTGCGCAAGGAGAAACTTAAAGAGGTGCTAGAAGTTCGCCTTACTCCTGTGGCCATACCACTTGAAAACAATAGCAGCAATAAGCATGAAACAAAAGAGGAAAATGATGCAGCTAACAAAGTCAATGAGAAAACTGAGGAGGAATCGGAGAATCAAGTAGGTGGCCGCTACAACCTTCGCCGCAGGAAGGACCAGAGTGATGGTCGACCTGTAGAGCTGGTAAAGAAGATGGAGGAAATCTTGCCACATGCCATACCACAGGAAACCCGGAAGACTACAGAACTGGAGTTTGGAGGGAGGATTGGTGTGGTGTTCTGGCTGCTGTTTCTACCTGTGGTGGTTCTGGCCATGCTTATTCTCTGTGCCCAGACAGATGCTAGTCTCCTTAACTTTTCCCTCTCGCCTCCCCTGCTTGAGCCTCTTTGGGACTGGCAGGTTTTTGGCATTGTGGTCCTCTGGCTGCTCTTCCAGGCTGTTCTTTCTCTGCTCCCTATCGGCAAGGTTGTTGAGGGAATGCCTCTGAAGAATgggaaaacattaaaataccgGATTAATGGCTTCTCTGCACTGATCATCAGTGCATTGGCAGTTGGTGGTGCTGTGTACTACGAGGTGGATCTTAGCTACGTCCATGCTCATTTTCTGCAGTTCTACACCTCAGCTCTACTCCTCTCCATCCTTCTCAGCATCTACCTGTTTATCCGCTCCCGCTGTGCTTCTGAAGATGAACGTGCCCCCGCTGGAAATACAGgtcATGTGGTCTACGATTTTTTCATGGGACGTGAGCTGAACCCACGAATCAAAAGCTTTGATATCAAATTCTTCTGTGAGATGCGTCCAGGCCTGATTGGTTGGCTTGTGATCAACTTTGCCATGTTACTTGCTGAGATGAAACACAAGAATCTGGATACCCCCTCCCCAGCCATGCTCCTCGTCAATGGCTTCCAGCTGCTTTGGGTTGCAGATGGCCTTTGGCATGAGGAGAAACTTCTAACCATGATGGATATAGTGCATGATGGCTTTGGGTTCATGCTAGCATTCGGAGATCTGGCTTGGGTTCCTTTTACCTTCACTTGTCAGGCCTACTACCTTGTCAGCCACACCAGCGATCTGTCTGTGTTCTGGATTGTTGCCATCATAATAATGAATGTTGTTGGTTACTACATTTTCCGGCAAGCCAACTCTCAAAAATTTGCCTTCAGAAGAAATCCATCAGATCCTGCCTTGTCTTaccTAAAAACGATTCCTACTGCAACTGGAAAGAATCTCATCGTCTCTGGTCTGTGGGGTTTTGTCCGTCATCCGAATTACCTTGGCGACCTCATTATGGCTCTGGCCTGGTCCTTATCATGTGGTTTCAGTCatgtgattccatatttttacCTAATTTACTTGGTTGTTCTCCTTGTCCATCGTGATGCCCGAGACGAACACCAGTGTCGGAAAAAGTACGGCTCAGCGTGGGAGGAATACTGCAAAGTTGTGCGTTACCGTATCTTGCCCGGGATTTACTGAGAGTCGCAGTGGACTTTTGGGGCACACCAAATTTTCTGAAgagaatataagaaaaaaaaatgtggtcaATTCTGTGAATTTCTAAACAAGCCAGCACAGTTAGTTTTCATCGATCAGCTTGGCAGCTATTTTGAGTCCTAGAAATGtactaaacttaaaaaaaaaaaaaaagttaggtgTTAAATCCCTTCATCATATATTTCTGAAGTTGCCCCAGTTGACGCTCACCTGGATATGTATATTAATgtacataatgttttttttttgtttgttttttttctcgaACAATTGATCATccgtgtttgttttttttcttccatatTTGAAGTATTACATTTTGCTTTGCTTCTTAATTTTGAACTATTTTGTAACATTACCGTTTTGGTAAAAAAGcttttgtatattatatatgatgGGATATAAATGCCGTGTATTTGTATAGTAAGATGGCAGTTATGCTCTTTCTCAGGACCAGTGCTTTGTGAGAAGAATTCATTAGAAGATTTGTCTtaaattttttatgtaaatattttttgattatttttgctTTTGGTTTGGTCTTTTATCCAAAGTTTAAGATTGGGCTTTGCTACCTCAAGTCTGTTGTCAGTTTCTTCTACCCTGAAGAAAAGGTTAGATTGCTGATCATTTTGGTGATCCACAGCCTTTTATGCGTTGTGGGAGAATCattttgttaaatattattCAAAATTCACATGAAAGATATCTGGTTGTCTATTTCTATTTTAGCTACTGGGTCTCTTTTTGGTAGTCTTTATGGAGgctatattttattaaagtgcATAATTGATGCATTTCTAATTATTTTGTGTAATTAAATGATTGTTGCAACAGTCTTATGAGGAAGTGTGcattttaaaatagcatttttttaaatgaagtaaaaaaaaaggtattttcaTCCCTTTAATTTGCCAAGGTGCAAGCTTTGTGTGGGTTGTGCTTGGCAAATTAAACAGCTGAATGACTGACATTAAATGCTAAATGTAAATtgatgattttgttttttaatttctgtaaacaaacaaaaaatctcACATATGAGTTTATTTTGCTTTgaatattttactgttattttgtgAAAATGGGGTCATCAATCAGGAACCTGCAACCTTTTCGATTGTAGCTAATCTGTTTCTTTAAGGAATGGATATTTTTACCCAGTACTTAACGCAAAGCGAATGATTGTCagcttaattcatttttaatcattaatgtttttcccaATAAAAGCCCACTGTAGATCAGAGTCCAGCAGGAAAAATTAAACTAGCAAATACCATGTTATTCCACTGCAGTGTACatatgttttgttcatttttgtcttttatggATTTTAGTAAATTTAGTTAACATTTTGTTAGATATTTAATGttgcaaattatttaatttttttactcgATGGTTGAGCACGTTTCTATTatccttatttgtttattttgttcttgTAATATTGTCTGTTTTCGGTCAGCAATTCAAACAGTCGTTTCTCATAAAATGGTGCGTCTTCCAGTGTAATGGAGGTATATGAAATTACAAACTGTCACAATAGTTCAGATTTCCTGACCTAAAGGTCAAACCTTATGTTGTACAAAgtgttttgcaaaaaaataaaggttttaagtattttgca

Function

symbol description
lbr Predicted to enable oxidoreductase activity, acting on the CH-CH group of donors. Acts upstream of or within cell migration involved in gastrulation. Located in nuclear inner membrane. Is expressed in several structures, including hypochord; nervous system; neural plate; optic vesicle; and tail bud. Human ortholog(s) of this gene implicated in Greenberg dysplasia; Pelger-Huet anomaly; and primary biliary cholangitis. Orthologous to human LBR (lamin B receptor).

NR:

description
PREDICTED: lamin-B receptor

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0005637 nuclear inner membrane cellular_component

KEGG:

id description
K19532 LBR; Delta14-sterol reductase (lamin-B receptor)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245411.3 True 3617 mRNA 0.41 14 73630251 73639424

Neighbor

gene id symbol gene type direction distance location
LOC103031805 LOC103031805,LOC105892805 coding downstream 21043 73604327 ~ 73609208 (-)
spats1 spats1 coding downstream 194037 73429168 ~ 73436214 (-)
ptchd4 ptchd4,LOC107553442,LOC107732383,LOC107732542,LOC107690039,LOC107601530 coding downstream 328225 73271560 ~ 73302026 (-)
tnfrsf21 tnfrsf21,LOC103398585 coding downstream 502563 73091575 ~ 73127688 (-)
LOC103026697 NA coding downstream 548243 73041468 ~ 73082008 (-)
enah enah coding upstream 7745 73647169 ~ 73747910 (-)
ppil6 ppil6 coding upstream 110562 73749986 ~ 73755516 (-)
LOC103034242 pla2g4a,LOC108442417,LOC108257972,LOC106560559 coding upstream 144583 73784007 ~ 73813141 (-)
LOC103035214 NA coding upstream 291973 73931397 ~ 73939674 (-)
c3h1orf112 cunh1orf112 coding upstream 316387 73955811 ~ 73970935 (-)
G32937 NA non-coding downstream 94147 73533661 ~ 73536104 (-)
LOC111191385 NA non-coding downstream 302097 73326367 ~ 73328154 (-)
G32900 NA non-coding downstream 304884 73319644 ~ 73325367 (-)
G32891 NA non-coding downstream 366698 73262330 ~ 73263553 (-)
G32879 NA non-coding downstream 412100 73217900 ~ 73218151 (-)
G33076 LOC108442415,LOC108257608,LOC106560557,LOC107726497,LOC107696164 non-coding upstream 243469 73882893 ~ 73884914 (-)
G33091 NA non-coding upstream 311488 73950912 ~ 73953542 (-)
G33099 NA non-coding upstream 352318 73991742 ~ 73992572 (-)
G32946 NA other downstream 77368 73552415 ~ 73552883 (-)
G32914 NA other downstream 241639 73387862 ~ 73388612 (-)
LOC103029909 LOC108412949 other downstream 596465 72921906 ~ 73033786 (-)
LOC103026087 NA other downstream 710954 72869708 ~ 72919297 (-)
pla2g7 pla2g7,LOC108440964,LOC107553425,LOC107696191 other downstream 816721 72803993 ~ 72813530 (-)
ak9 ak9 other upstream 117484 73756908 ~ 73778866 (-)
LOC111191425 NA other upstream 157039 73796463 ~ 73868538 (-)

Expression


Co-expression Network