LOC103034574 (ptgs2b,LOC108442416,LOC107732418,LOC107698381,LOC107553505,LOC107726413,LOC107696154,LOC107599092)


Basic Information

Item Value
gene id LOC103034574
gene name ptgs2b,LOC108442416,LOC107732418,LOC107698381,LOC107553505,LOC107726413,LOC107696154,LOC107599092
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73814970 ~ 73820823 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245417.3
TCCTCGTTCGTGCCCGGTTCATTCACTCCCTACAGCCGACGGGAAAAGGCGCACCTTGAGACGCTGGAATGCACAGAACCGCGTCGCTCCTGCTGTGTCTCTATCTGGGGTGCTTGGCTTGCGAAGGAGCCAACCCCTGTTGCTCCCAGCCATGCCAGAATCGAGGTGTGTGTACAGAACTTGGCACTGATGCTTATGAATGTGACTGCACACGCACTGGATACTATGGGCAAAACTGCACAACACCTGAGCTCCTCACCTGGATCAAAGTGTCCCTAAAACCATTGCCGAACACAGTGCACTACATCCTCACACACTTCAAAGGCCTATGGAACATCATTAACAATATTTCATTTATGCGGGATGCCATCATGCGTTATGTTCTGACATCACGTTCCCATCTGATTGACAGCCCTCCAACATTCAATTCCGACTATGGCTACAAGAGCTGGGAGGCCTATTCCAACCTGTCCTACTTCACACGGACCTTACCCCCTGTTCCTCAGGATTGCCCAACGCCGATGGGTGTCGCAGGTAAAAAAGAGCTACCAGATGTAAAGATAGTTGCAGAAAAGCTTCTGCTGAGAAGAAAGTTCATCCCTGACCCGCAGCGAACAAGCCTCATGTTTGCCTTTTTCGCCCAGCACTTTTCACACCAGTTCTTCAAAACCGACATGAAGAAAGGTCCAGCCTTCACCAGAGCAAAGGGCCATGGAGTTGATCTGAGTCACATTTATGGAGAAGAACTGGAACGCCAGCACAAGCTCCGACTCTTTAAAGATGGGAAGCTAAAATTTCAGATTCTGGATGGTGAGGTATACCCACCTACTGTCAGTGATGTTCAGGTGGACATGCACTATCCTCCTCACGTGCCTGAGTCTCACCGCTTTGCTGTGGGCCATGAAGCCTTCGGCTTGGTCCCAGGCCTCATGATGTATGCGACAATTTGGCTTCGGGAACACAACCGCGTCTGCGACATTCTTAAACAGGAGCATCCGGACTGGGATGATGAGCGACTCTTCCAGACTTCAAGGCTGATCCTCATAGGTGAGACCATTAAGATTGTGATTGAAGATTATGTGCAGCACTTGAGCGGCTACCACTTCAAGCTCAAATTCGATCCAGAGCTCCTCTTCAAAGAGCGTTTTCAGTACCAGAACCGGATCTCCTCTGAGTTTAACACTCTCTACCACTGGCACCCACTCATGCCTGATGACTTTCACATCCAGGACGAGGTTTTCagcttcaagcagttcatcttcaACACCTCCATTTTGACAAACTATGGGGTCAATAACCTGGTGGAATCGTTTACCAAGCAGATAGCAGGAAGGGTGGCCGGTGGTCGTAATGTTGCTCCTGCAGTGTTGATGGTGGCAATGAAGTCTATAGAGAACAGCAGACAGATGCGATATCAGTCACTGAACGCTTACAGGAAGCGCTTCAACTTGAAACCCTATGTCTCCTTTGAGGATATGACAGGTGAGAAGGAGATGGCGGCAGAGCTGGAGGAGCTGTACGGAGACGTGGACGCCGTGGAGCTATACACCGGTCTGCTAGTGGAGAAACCTAGACAGAACGCCATCTTTGGGGAAACCATGGTGGAGATGGGTGCCCCATACTCTCTGAAAGGCCTTATGGGAAACCCCATTTGCTCCCCTGAGTACTGGAAGCCCAGCACATTCGGTGGCAAAGTTGGATTTGATATTATAAACACTGCCTCACTGCAGAAGCTGGTCTGCAATAACGTCAAGGGGCCGTGTCCCATTGCATCTTTTTACGTGCCCAATGTAAAAGATTCAGTACCAACCACCATCAACGCAAGTACAGCCCATTCAAGTCAAAAAGAGGTCAACCCAACAGTAATACTTAAAGAAAGGACTTCTGAGCTCTGATTACCCACCACTGTGATGGAACtaatactattatttatttatttatttattattgctatatttattatatttattatattttaactaaAAGAGCATTTTTGTACAAATGTTGTATATAAAAGGTAGAAATATTTCtatgtttctgtatttatttttagtgcattaagttttgtatttttgacctCAGATTTTAGCACTGTAATTAagctttttactgtgttttgtggtgtttttcAAAATCATACTTGAATTGAACAGATTGAGTTTACAATGTGTTAAATGTCAGATTCTATTAAGTATATAAGTTATTATTAAATAGCTTCTATCTGCCTGTTCAGTCTATGTTTACCTGTCTTTCCTTCACaatcttatttatattttatagctgCAGCATCTCAGACTCGTTGTATAATGCAATTAGATCTGTCACAATGCCACTTTCTATTCATTTAACTTGTTTGATGAgtaactgtactgtattttttttacgttaAGTCAGGTAAAGAAAAGTGAATAGTAACTATGCAACGTTATAATAAACAACCATTTCTATCAAA

Function

symbol description
ptgs2b Enables peroxidase activity. Acts upstream of or within cellular response to organic cyclic compound. Predicted to be located in endoplasmic reticulum membrane. Is expressed in several structures, including gonad; heart; kidney; male organism; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including Barrett's esophagus; arthritis (multiple); cardiovascular system disease (multiple); liver disease (multiple); and lung disease (multiple). Orthologous to human PTGS2 (prostaglandin-endoperoxide synthase 2).

NR:

description
PREDICTED: prostaglandin G/H synthase 2-like

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0071407 cellular response to organic cyclic compound biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004601 peroxidase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K11987 PTGS2, COX2; prostaglandin-endoperoxide synthase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245417.3 True 2452 mRNA 0.44 10 73814970 73820823

Neighbor

gene id symbol gene type direction distance location
opn5 opn5 coding upstream 567785 73219526 ~ 73247185 (+)
LOC103025777 mep1a coding upstream 967156 72833413 ~ 72847814 (+)
LOC103025272 LOC108440976 coding upstream 983355 72823559 ~ 72831615 (+)
LOC103024428 LOC103024428,LOC108440977 coding upstream 992693 72815642 ~ 72822277 (+)
tdrd6 NA coding upstream 1011181 72786996 ~ 72803789 (+)
pdc pdcb,pdc,LOC108442415,LOC106560557,LOC108257608,LOC107553454 coding downstream 58843 73879666 ~ 73884428 (+)
LOC103035930 tpr coding downstream 87039 73907862 ~ 73931368 (+)
scyl3 scyl3,LOC104956565 coding downstream 125255 73946078 ~ 73954704 (+)
sell NA coding downstream 178760 73999583 ~ 74004379 (+)
LOC103039489 NA coding downstream 276356 74097179 ~ 74126080 (+)
G32961 NA non-coding upstream 178278 73634296 ~ 73636692 (+)
G32960 NA non-coding upstream 181341 73630287 ~ 73633629 (+)
G32959 NA non-coding upstream 194103 73620566 ~ 73620867 (+)
G32951 NA non-coding upstream 222659 73592077 ~ 73592311 (+)
G32949 NA non-coding upstream 243592 73570993 ~ 73571378 (+)
G33041 NA non-coding downstream 112336 73933159 ~ 73933805 (+)
G33043 NA non-coding downstream 114323 73935146 ~ 73935885 (+)
G33051 NA non-coding downstream 135061 73955884 ~ 73960904 (+)
G33054 cunh1orf112,c25h1orf112 non-coding downstream 146396 73967219 ~ 73970910 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other upstream 307983 73439056 ~ 73506987 (+)
cd2ap cd2ap other upstream 618750 73144650 ~ 73196220 (+)
sf3b6 SF3B6,sf3b6,pm14 other upstream 1028607 72781793 ~ 72786363 (+)
G32641 NA other upstream 1218033 72595906 ~ 72596937 (+)
usp24 usp24 other upstream 1317906 72403534 ~ 72497064 (+)
selp NA other downstream 167678 73988501 ~ 74016347 (+)

Expression


Co-expression Network