scyl3 (scyl3,LOC104956565)


Basic Information

Item Value
gene id scyl3
gene name scyl3,LOC104956565
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73946078 ~ 73954704 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245428.3
GGAAAGAGACAGCGCTAGTTTAGTCTTTTAAAGTTCAGAACAGAGTCTCTCGACTGTAGATGTACTAATTTACAGACCTGTGTCTGTAAGGATTAATCCAGTACCgcgcgctgtgtgtgtgtgagagagagaggggcgggaCAGGGCGCTGGGGGAATGGTTCGGTCCCGGCGGGCGGTTGGCCGGTGTTTATGACTGGGGAACAGGATGTGCGCTGGGCTGCGGGGATAGAGAGTAGGCTGGATGTGTTAATGCTGCCGCTTATCACAGCAGCTCTGTGTCTGCTCTCGGTAATTAACAGTTTGCGGAGAGTCCACCTGACCTGACTGGAGCCGGAGTGTAGAGCTGCAGGTCAGGTCGACATGGGAGCCGCCGGAGAAATCCACTGATTCACTGAGCTGAGGAAACGACACGGCCGCGCAGAGCAGTTGGCTGCAACCATGGGTGCAGAGAGCAGTGCCCTGCGGAGCTGCATCTTGGAAGAGCCGTTGCTGACGCTGCCTTCAGGACTCACAATGTACTCTGCCATCTTACAGGATGGAAAGGCTGCCTCTGTGTTTGTCTACAAGCAGGGCAATGAAGACAAAGTCAACAAAGCTGCCAAGCACCTGAAGACTCTGAGGCACCCAAGCCTGCTGCGGTTCCTCTCTTGTTCTGTACAGAATGGAGGCATTCACCTGGTAACGGAGAGAGTTAAGCCGTTGGAGTTGCTGCTTGACAGTCTCACGCCAGAAGAGATCTGTGCAGGCATTTATGACCTGTTGCAGGCTCTCGTCTTCCTCCATGACAGGGGCAAATCAAGCCACAACAACGTGTGTATGTCCTCCGTGTTTGTCAGTGAGGATGGACATTGGAAGCTTGGAGGAATGGAGACAGTTTGCAAGTTTGCAGAAGCAACACCAGAGTTTCTTGCCAGTGTTGCAACAGTAAGAGAAAGCAGTGCTATTCCTCCTGAGGAGAAGCTGGATGGGTTTAAAACACTTCCCGACAAGCACGCCCACTCGCGTGACGCCTTCTCTTTTGGTGTGCTGGTGGAGGCCCTCATTCCTCTACTGAATGGATATGTGTCTGAGGAGCTGGCAGAGAGTCTAAGGAGCATGCTGCAGGTCAGCCTGCTGACCCCTGACCCCACAGCAAGATCACCCCTCAGCAGTCTACTGACTCACGAGTTTTTTAGGAATGACTTTCTGGACATCATGAACTTTCTGAAGAGTTTGACTTTGAAATCTGAAGAGGAAAAGCATGAGTTCTTTAAATTTTTGCTGGACCGAGTTCATAGCCTTCCAGAGGAGTTGATAGGTGCTCGTTTAGCTCCTAAGCTGTTGAATTCCCTGGTGTTTGCTGAACCTACAGCTGTGAAAAGCTTCCTGCCTCACCTTTTACAGCCAAAGAAAGACTCTGGAGTGGGGGTTGCTGATGAGTGTCTGCTTTCTATGCCACTGTATCGGAGGCATGTGTTCCCACAGCTTCTGAAGCTCTTCAAAGTTAATGAAGAGCATGTGCGGATGGTGCTCCTCTCGCATATACACATCTATGCTGAGTTCTTCTCGCACGATGAGCTGAAGAACCAGATCCTACCTCAGgtGTTGCTGGGAATGAGGGACACAAATGATACACTGGTTGCAATGACATTACAGGCTCTGGCAGTACTAGTCCCACTGCTGGGTGCGGAAGTGGTGGTGGGTGGAGAGAGGACCAAGGTCTTTAAACGGACCACACCAAACTTTACCAAGTCAACAGAGGTTACCCCAGAAACCTCACCGGTTCATATTGTTGGACGGTCACTTCCCCATGTGTCACAGCCATCAAAGATTATGAGCCTGTTTCCAAAACCTTCTGAGGGCAAGTCGCTAGTTCTGGAGAACCtaagctctattcaaaaagttCACCCTTCAGCATCAAAGACAGGGGTGAACAAAGACATGACACTTCCTTTGAATGGCTTCAACAAAGACAAGCAGAGAGAGAACATAAGCAGAATAGCCAAGGTTGAGGATGAGAACTGGCCTGACTGGAGTGATTCAGAGGAGAAATCGGACAGAGACGAGGGTCAGCCTGTCCAAATCAACATATGGCACCCAAACACTGCCTCTGAATTGCCGACCACTGCTGAAGGCAATATAGAGGAACCCTGGGACGATTTTGAAGATTCAGAAGTAATCTCGGATCAGTCGCCTACGACACCAACACTGGCCCCGGTGTCAAGGGCCTCAAGAGACCGTGCTGCTGTATCTGTACCTACGCCTAGTTCTGGACCTCAAAAAGTGTCTAAAGCACTCCAGCTGAGCTCTAGTGTGAAACCTTCTCCAGAGCAGAACACATCATGGGATACTGGCTGGGACCAGAGCATTGAAGACCTCCGGGCTTTTCAACCAAGTTTATCTACACAGTCCAAGCCCAAAACTGCACAGAGGAGTGCAGGAACGGAAGGACTGGGAGAGGAGTTCACTATTGAAGTGAAAAGGAAGCTGGAGAGGGATCCAGAGCTGGACTTCTTTGCTGACATGGTACCAGACATAAAGCTGTCCTCTTCTTCCATGCTTGTCCCAGCAGGGAGTTCAGTGAACAAGTCATCAGGACTTACAGCTGGACCATTATCTCACGCTGAGCCAGAGAGTAGAGGCGCAGTAGACCCACTGCACCTGACTGCTAAGTTTGCTGCAGTGGATCTGACAGAGACTGAAGCAGAGGGATGGGGTGATGGTGATGAGCTCAACTGGGAGGATGAAAATGCCTGGTGAGGAACTAATCTTATCATGAAGCCATAAAAGGCTGTGCAAAAGACAAATCAGTTTACAAAGTCGGTGCAAATATGGATATTTCCAGTGTTAGCTGATAAAACACCTCCCAACACTACCTTTTATTGTGGAACTGTTATCTTAGTGCTACTAAAGCAGGAGCATTAAAGAGGTTAGCTTTGCCAACATTTATGGTGATTGGATTATGTTCTTGAAACATTTATCCATTTCAAATTATATTGCTGTACCAAGGCGGCTGGATTTCTTTTCATTTGCCTCAGTTTTATAAAGATATGTGATAATTCAGGAACATTGTGATAAACAGGTTTGATTGACAACAAGCaggcattaaaaatatttttttttgttagaatgACTTTCAACAAAATTAGTTTTTCTATGTTGCAGTTGTTGTTcttggaagtttttttttttttttttttttttaatcagttccTTCAATTTGTCCAAACAGCTATTTGCCAAGTTGTGACAAAACCAATCTTCTTTCACTGGAAGTGCATATGCTACATTTGTCtttagttttattctgtttttattttgtgccATAAACCTCACATCCATTCTACCTATTCAAAGAAAGAGCCTTATAGAATAGCCAGTCtcaaataaatgtgtatatatagagaatatattgaaataaaagTTTCGGGGCAGGGTTGtgcgagtgtgagagagtgaaagagagaatgccataatttatttgtattgtcaGCTACTGATGGAATAAAAGGTTTTATGGTA
>XM_007245429.3
GGGAAAGAGACAGCGCTAGTTTAGTCTTTTAAAGTTCAGAACAGAGTCTCTCGACTGTAGATGTACTAATTTACAGACCTGTGTCTGTAAGGATTAATCCAGTACCgcgcgctgtgtgtgtgtgagagagagaggggcgggaCAGGGCGCTGGGGGAATGGTTCGGTCCCGGCGGGCGGTTGGCCGGTGTTTATGACTGGGGAACAGGATGTGCGCTGGGCTGCGGGGATAGAGAGTAGGCTGGATGTGTTAATGCTGCCGCTTATCACAGCAGCTCTGTGTCTGCTCTCGGTAATTAACAGTTTGCGGAGAGTCCACCTGACCTGACTGGAGCCGGAGTGTAGAGCTGCAGGTCAGGTCGACATGGGAGCCGCCGGAGAAATCCACTGATTCACTGAGCTGAGGAAACGACACGGCCGCGCAGTTGGCTGCAACCATGGGTGCAGAGAGCAGTGCCCTGCGGAGCTGCATCTTGGAAGAGCCGTTGCTGACGCTGCCTTCAGGACTCACAATGTACTCTGCCATCTTACAGGATGGAAAGGCTGCCTCTGTGTTTGTCTACAAGCAGGGCAATGAAGACAAAGTCAACAAAGCTGCCAAGCACCTGAAGACTCTGAGGCACCCAAGCCTGCTGCGGTTCCTCTCTTGTTCTGTACAGAATGGAGGCATTCACCTGGTAACGGAGAGAGTTAAGCCGTTGGAGTTGCTGCTTGACAGTCTCACGCCAGAAGAGATCTGTGCAGGCATTTATGACCTGTTGCAGGCTCTCGTCTTCCTCCATGACAGGGGCAAATCAAGCCACAACAACGTGTGTATGTCCTCCGTGTTTGTCAGTGAGGATGGACATTGGAAGCTTGGAGGAATGGAGACAGTTTGCAAGTTTGCAGAAGCAACACCAGAGTTTCTTGCCAGTGTTGCAACAGTAAGAGAAAGCAGTGCTATTCCTCCTGAGGAGAAGCTGGATGGGTTTAAAACACTTCCCGACAAGCACGCCCACTCGCGTGACGCCTTCTCTTTTGGTGTGCTGGTGGAGGCCCTCATTCCTCTACTGAATGGATATGTGTCTGAGGAGCTGGCAGAGAGTCTAAGGAGCATGCTGCAGGTCAGCCTGCTGACCCCTGACCCCACAGCAAGATCACCCCTCAGCAGTCTACTGACTCACGAGTTTTTTAGGAATGACTTTCTGGACATCATGAACTTTCTGAAGAGTTTGACTTTGAAATCTGAAGAGGAAAAGCATGAGTTCTTTAAATTTTTGCTGGACCGAGTTCATAGCCTTCCAGAGGAGTTGATAGGTGCTCGTTTAGCTCCTAAGCTGTTGAATTCCCTGGTGTTTGCTGAACCTACAGCTGTGAAAAGCTTCCTGCCTCACCTTTTACAGCCAAAGAAAGACTCTGGAGTGGGGGTTGCTGATGAGTGTCTGCTTTCTATGCCACTGTATCGGAGGCATGTGTTCCCACAGCTTCTGAAGCTCTTCAAAGTTAATGAAGAGCATGTGCGGATGGTGCTCCTCTCGCATATACACATCTATGCTGAGTTCTTCTCGCACGATGAGCTGAAGAACCAGATCCTACCTCAGgtGTTGCTGGGAATGAGGGACACAAATGATACACTGGTTGCAATGACATTACAGGCTCTGGCAGTACTAGTCCCACTGCTGGGTGCGGAAGTGGTGGTGGGTGGAGAGAGGACCAAGGTCTTTAAACGGACCACACCAAACTTTACCAAGTCAACAGAGGTTACCCCAGAAACCTCACCGGTTCATATTGTTGGACGGTCACTTCCCCATGTGTCACAGCCATCAAAGATTATGAGCCTGTTTCCAAAACCTTCTGAGGGCAAGTCGCTAGTTCTGGAGAACCtaagctctattcaaaaagttCACCCTTCAGCATCAAAGACAGGGGTGAACAAAGACATGACACTTCCTTTGAATGGCTTCAACAAAGACAAGCAGAGAGAGAACATAAGCAGAATAGCCAAGGTTGAGGATGAGAACTGGCCTGACTGGAGTGATTCAGAGGAGAAATCGGACAGAGACGAGGGTCAGCCTGTCCAAATCAACATATGGCACCCAAACACTGCCTCTGAATTGCCGACCACTGCTGAAGGCAATATAGAGGAACCCTGGGACGATTTTGAAGATTCAGAAGTAATCTCGGATCAGTCGCCTACGACACCAACACTGGCCCCGGTGTCAAGGGCCTCAAGAGACCGTGCTGCTGTATCTGTACCTACGCCTAGTTCTGGACCTCAAAAAGTGTCTAAAGCACTCCAGCTGAGCTCTAGTGTGAAACCTTCTCCAGAGCAGAACACATCATGGGATACTGGCTGGGACCAGAGCATTGAAGACCTCCGGGCTTTTCAACCAAGTTTATCTACACAGTCCAAGCCCAAAACTGCACAGAGGAGTGCAGGAACGGAAGGACTGGGAGAGGAGTTCACTATTGAAGTGAAAAGGAAGCTGGAGAGGGATCCAGAGCTGGACTTCTTTGCTGACATGGTACCAGACATAAAGCTGTCCTCTTCTTCCATGCTTGTCCCAGCAGGGAGTTCAGTGAACAAGTCATCAGGACTTACAGCTGGACCATTATCTCACGCTGAGCCAGAGAGTAGAGGCGCAGTAGACCCACTGCACCTGACTGCTAAGTTTGCTGCAGTGGATCTGACAGAGACTGAAGCAGAGGGATGGGGTGATGGTGATGAGCTCAACTGGGAGGATGAAAATGCCTGGTGAGGAACTAATCTTATCATGAAGCCATAAAAGGCTGTGCAAAAGACAAATCAGTTTACAAAGTCGGTGCAAATATGGATATTTCCAGTGTTAGCTGATAAAACACCTCCCAACACTACCTTTTATTGTGGAACTGTTATCTTAGTGCTACTAAAGCAGGAGCATTAAAGAGGTTAGCTTTGCCAACATTTATGGTGATTGGATTATGTTCTTGAAACATTTATCCATTTCAAATTATATTGCTGTACCAAGGCGGCTGGATTTCTTTTCATTTGCCTCAGTTTTATAAAGATATGTGATAATTCAGGAACATTGTGATAAACAGGTTTGATTGACAACAAGCaggcattaaaaatatttttttttgttagaatgACTTTCAACAAAATTAGTTTTTCTATGTTGCAGTTGTTGTTcttggaagtttttttttttttttttttttttaatcagttccTTCAATTTGTCCAAACAGCTATTTGCCAAGTTGTGACAAAACCAATCTTCTTTCACTGGAAGTGCATATGCTACATTTGTCtttagttttattctgtttttattttgtgccATAAACCTCACATCCATTCTACCTATTCAAAGAAAGAGCCTTATAGAATAGCCAGTCtcaaataaatgtgtatatatagagaatatattgaaataaaagTTTCGGGGCAGGGTTGtgcgagtgtgagagagtgaaagagagaatgccataatttatttgtattgtcaGCTACTGATGGAATAAAAGGTTTTATGGTA

Function

symbol description
scyl3 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human SCYL3 (SCY1 like pseudokinase 3).

NR:

description
protein-associating with the carboxyl-terminal domain of ezrin isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K17542 SCYL3; SCY1-like protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245428.3 True 3503 mRNA 0.47 14 73946079 73954704
XM_007245429.3 False 3499 mRNA 0.47 14 73946078 73954704

Neighbor

gene id symbol gene type direction distance location
LOC103035930 tpr coding upstream 14710 73907862 ~ 73931368 (+)
pdc pdcb,pdc,LOC108442415,LOC106560557,LOC108257608,LOC107553454 coding upstream 61650 73879666 ~ 73884428 (+)
LOC103034574 ptgs2b,LOC108442416,LOC107732418,LOC107698381,LOC107553505,LOC107726413,LOC107696154,LOC107599092 coding upstream 125255 73814970 ~ 73820823 (+)
opn5 opn5 coding upstream 698893 73219526 ~ 73247185 (+)
LOC103025777 mep1a coding upstream 1098264 72833413 ~ 72847814 (+)
sell NA coding downstream 44879 73999583 ~ 74004379 (+)
LOC103039489 NA coding downstream 142475 74097179 ~ 74126080 (+)
G33043 NA non-coding upstream 10193 73935146 ~ 73935885 (+)
G33041 NA non-coding upstream 12273 73933159 ~ 73933805 (+)
G32961 NA non-coding upstream 309386 73634296 ~ 73636692 (+)
G32960 NA non-coding upstream 312449 73630287 ~ 73633629 (+)
G32959 NA non-coding upstream 325211 73620566 ~ 73620867 (+)
G33051 NA non-coding downstream 1180 73955884 ~ 73960904 (+)
G33054 cunh1orf112,c25h1orf112 non-coding downstream 12515 73967219 ~ 73970910 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other upstream 439091 73439056 ~ 73506987 (+)
cd2ap cd2ap other upstream 749858 73144650 ~ 73196220 (+)
sf3b6 SF3B6,sf3b6,pm14 other upstream 1159715 72781793 ~ 72786363 (+)
G32641 NA other upstream 1349141 72595906 ~ 72596937 (+)
usp24 usp24 other upstream 1449014 72403534 ~ 72497064 (+)
selp NA other downstream 33797 73988501 ~ 74016347 (+)

Expression


Co-expression Network