LOC103038456 (LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC106916811,LOC103142585)


Basic Information

Item Value
gene id LOC103038456
gene name LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC106916811,LOC103142585
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 74047939 ~ 74086439 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245430.3
ACTGTGTCAGAGAACGAGCTGGGCTGTGTTATTAGTCCCTCCTCCGGCTGTCGCTGGCGCTGGGCCGTGTCCCTCGCGCCTCCCCCTCAGAGGGGCCCTGAGAGCAGGCTAAAGCTAGCAGCGTCCGCCGAGTTTCCTCACTCGGCCGGGGAGCGGATCCAGGAGGAGGAGATGCCGCTGTGTCTGACGGCCCAGCTACAGCCACCACCGCCCGCACAGCACACCGGAGCGGACCTCTGAGCGGAGATATGGATAATAATGAGGCGTACTTACACCTGAattCGTCTGGGGCCCTGAATTCATCTTCCTCTCAGCCACCACCAATGAGCACCATGATGGGACATCCGTCGGTCATCAGTTCCTCACGGCCCCTCCCCTCAGGCATGGGACCACTAGGATCGCCTGTCAACGGACTGGCTTCACCCTACTCAGTCATTACTTCCTCCATGGGCTCTCCTTCCATCTCACTACCCTCCACGCCTGGCATGGGATTCAGCACCCTTAACAGCCCACAGATGAACTCTCTGAGCAGTGTGAGCAGCTCTGAGGACGTGAAGCCTCCTCCTGGTCTGCCACCTCTGGGCAACATGAACAGCTATCAGTGCACCAGCCCCGGCTCCATGTCCAAACACATCTGCGCCATCTGCGGAGACCGCTCCTCAGGAAAACACTATGGCGTGTACAGCTGTGAAGGCTGTAAAGGCTTCTTTAAGAGGACCATCCGAAAAGACCTGACCTACACATGTCGAGACAACAAGGAGTGCCTGATCGACAAGCGGCAGCGCAACCGCTGCCAGTACTGCCGCTACCAGAAGTGCCTGGCCATGGGCATGAAGAGGGAAGGTGTGTGTGGGAGTATGGCGGTTCAGGAAGAGAGGCAGCGTGGGAAGGAGAAGAGCGATAATGAGGTGGAGTCAACCAGCAGTTTTAACGAAGAAATGCCGGTGGAGAAAATCCTGGATGCAGAGCTCGCAGTGGAACCCAAAACGGAAACACAGACAGACGGCAGCCCTGGAAACTCTACAAACGACCCGGTCACTAATATTTGCCAGGCAGCCGACAAGCAGCTCTTCACACTGGTGGAATGGGCAAAGAGGATACCGCACTTCTCAGACCTACCCCTAGATGACCAGGTCATTCTGCTCAGGGCAgGTTGGAACGAGCTGCTCATCGCGTCATTCTCGCATCGCTCCGTCACTGTGAAGGATGGCATCCTGCTGGCCACCGGCCTTCACGTACACCGCAGCAGTGCCCACAGTGCTGGGGTGGGCTCTATTTTCGACAGAGTGCTGACTGAGCTGGTGTCTAAAATGAAGGACATGCAGATGGATAAGACAGAGCTGGGCTGCCTGAGAGCCATCGTCCTTTTTAACCCAGATGCTAAAGGCCTGTCGAACCCATCTGAGGTAGAGGGGCTCAGGGAGAAGGTCTATGCATCTCTGGAGTCATACACAAAGCAGAAATACCCCGACCAACCTGGCAGGTTTGCTAAGCTCTTACTGCGCCTTCCGGCTCTCCGCTCCATTGGTCTAAAGTGTCTGGAGCACCTCTTCTTCTTCAAGCTGATCGGAGACACGCCCATAGACACCTTCCTCATGGAGATGCTGGAAGCGCCCCACCAGATCACATGACACAAGCCCTGCCCCACTACCGTTTCTTTTGTACATACACCCTTGTAATAATTGATATGATGAACTTGATCGAGGATGTAAGCTGCGTATTTTGTACCAAGCACAAATTATTACTGATGTGAAAACAAAATTTGTATGGGGAGGGGGGTCGGAGTTGGAGTGGGATAGCTTTCAAAGTACACTGTCAAAATGAATTTGAATAGATTTGTTTTGGAAAGAATTTTGCTCTTTGTAAATAGATAATTCAGGTGTCCACTCTAACAGCAAAAcaatgcaataaagaacatttattttattcaaaaagaaTGAAGtttatcaaagaaaaaaacataatttctaaaaaaaaaaaaagaaaagaaaaatgcagtTTAGAATCCTGcctgaataaaatatttaaattta
>XM_007245431.3
TGTGTCAGAGAACGAGCTGGGCTGTGTTATTAGTCCCTCCTCCGGCTGTCGCTGGCGCTGGGCCGTGTCCCTCGCGCCTCCCCCTCAGAGGGGCCCTGAGAGCAGGCTAAAGCTAGCAGCGTCCGCCGAGTTTCCTCACTCGGCCGGGGAGCGGATCCAGGAGGAGGAGATGCCGCTGTGTCTGACGGCCCAGCTACAGCCACCACCGCCCGCACAGCACACCGGAGCGGACCTCTGAGCGGAGATATGGATAATAATGAGGCGTACTTACACCTGAattCGTCTGGGGCCCTGAATTCATCTTCCTCTCAGCCACCACCAATGAGCACCATGATGGGACATCCGTCGGTCATCAGTTCCTCACGGCCCCTCCCCTCAGGCATGGGACCACTAGGATCGCCTGTCAACGGACTGGCTTCACCCTACTCAGTCATTACTTCCTCCATGGGCTCTCCTTCCATCTCACTACCCTCCACGCCTGGCATGGGATTCAGCACCCTTAACAGCCCACAGATGAACTCTCTGAGCAGTGTGAGCAGCTCTGAGGACGTGAAGCCTCCTCCTGGTCTGCCACCTCTGGGCAACATGAACAGCTATCAGTGCACCAGCCCCGGCTCCATGTCCAAACACATCTGCGCCATCTGCGGAGACCGCTCCTCAGGAAAACACTATGGCGTGTACAGCTGTGAAGGCTGTAAAGGCTTCTTTAAGAGGACCATCCGAAAAGACCTGACCTACACATGTCGAGACAACAAGGAGTGCCTGATCGACAAGCGGCAGCGCAACCGCTGCCAGTACTGCCGCTACCAGAAGTGCCTGGCCATGGGCATGAAGAGGGAAGCGGTTCAGGAAGAGAGGCAGCGTGGGAAGGAGAAGAGCGATAATGAGGTGGAGTCAACCAGCAGTTTTAACGAAGAAATGCCGGTGGAGAAAATCCTGGATGCAGAGCTCGCAGTGGAACCCAAAACGGAAACACAGACAGACGGCAGCCCTGGAAACTCTACAAACGACCCGGTCACTAATATTTGCCAGGCAGCCGACAAGCAGCTCTTCACACTGGTGGAATGGGCAAAGAGGATACCGCACTTCTCAGACCTACCCCTAGATGACCAGGTCATTCTGCTCAGGGCAgGTTGGAACGAGCTGCTCATCGCGTCATTCTCGCATCGCTCCGTCACTGTGAAGGATGGCATCCTGCTGGCCACCGGCCTTCACGTACACCGCAGCAGTGCCCACAGTGCTGGGGTGGGCTCTATTTTCGACAGAGTGCTGACTGAGCTGGTGTCTAAAATGAAGGACATGCAGATGGATAAGACAGAGCTGGGCTGCCTGAGAGCCATCGTCCTTTTTAACCCAGATGCTAAAGGCCTGTCGAACCCATCTGAGGTAGAGGGGCTCAGGGAGAAGGTCTATGCATCTCTGGAGTCATACACAAAGCAGAAATACCCCGACCAACCTGGCAGGTTTGCTAAGCTCTTACTGCGCCTTCCGGCTCTCCGCTCCATTGGTCTAAAGTGTCTGGAGCACCTCTTCTTCTTCAAGCTGATCGGAGACACGCCCATAGACACCTTCCTCATGGAGATGCTGGAAGCGCCCCACCAGATCACATGACACAAGCCCTGCCCCACTACCGTTTCTTTTGTACATACACCCTTGTAATAATTGATATGATGAACTTGATCGAGGATGTAAGCTGCGTATTTTGTACCAAGCACAAATTATTACTGATGTGAAAACAAAATTTGTATGGGGAGGGGGGTCGGAGTTGGAGTGGGATAGCTTTCAAAGTACACTGTCAAAATGAATTTGAATAGATTTGTTTTGGAAAGAATTTTGCTCTTTGTAAATAGATAATTCAGGTGTCCACTCTAACAGCAAAAcaatgcaataaagaacatttattttattcaaaaagaaTGAAGtttatcaaagaaaaaaacataatttctaaaaaaaaaaaaagaaaagaaaaatgcagtTTAGAATCCTGcctgaataaaatatttaaattta

Function

NR:

description
retinoic acid receptor RXR-gamma-B isoform X1

GO: NA

KEGG:

id description
K08526 RXRG, NR2B3; retinoid X receptor gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245430.3 True 2033 mRNA 0.52 10 74047939 74086439
XM_007245431.3 False 2013 mRNA 0.52 10 74047939 74086437

Neighbor

gene id symbol gene type direction distance location
LOC103031184 LOC108443214 coding downstream 4822 74025605 ~ 74043117 (-)
LOC103037051 si:dkey-51e6.1,LOC103037051,LOC108442414,LOC107555634,LOC107726439,LOC107696171,LOC105907105,LOC108257519 coding downstream 68205 73977191 ~ 73979734 (-)
c3h1orf112 cunh1orf112 coding downstream 77004 73955811 ~ 73970935 (-)
LOC103035214 NA coding downstream 108265 73931397 ~ 73939674 (-)
LOC103034242 pla2g4a,LOC108442417,LOC108257972,LOC106560559 coding downstream 234798 73784007 ~ 73813141 (-)
G33099 NA non-coding downstream 55367 73991742 ~ 73992572 (-)
G33091 NA non-coding downstream 94397 73950912 ~ 73953542 (-)
G33076 LOC108442415,LOC108257608,LOC106560557,LOC107726497,LOC107696164 non-coding downstream 163025 73882893 ~ 73884914 (-)
G32937 NA non-coding downstream 511835 73533661 ~ 73536104 (-)
LOC111191385 NA non-coding downstream 719785 73326367 ~ 73328154 (-)
LOC111191425 NA other downstream 179401 73796463 ~ 73868538 (-)
ak9 ak9 other downstream 269073 73756908 ~ 73778866 (-)
G32946 NA other downstream 495056 73552415 ~ 73552883 (-)
G32914 NA other downstream 659327 73387862 ~ 73388612 (-)
LOC103029909 LOC108412949 other downstream 1014153 72921906 ~ 73033786 (-)

Expression


Co-expression Network