LOC103031184 (LOC108443214)


Basic Information

Item Value
gene id LOC103031184
gene name LOC108443214
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 74025605 ~ 74043117 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245496.3
aaaaaaacattgatcatcattttttatctttatttacttTGCAGAGTTTCCGATCATCATGGGGGAAGGAAATCTGTCAGCTTTACCTGTTTGTGTGGACCCCTCTCCTCAGGCCGCGTGTGTGTGCGCGGGCTGCTCGCGCCCCATCCGGGAGCGGTTCCTGCTGCGCGTGCACTGCGGCGTGTGGCACGAGCGGTGCGCGCGCTGCTGTGAGTGTGGAGAGCTGCTGAAGAAGAGCTGCTACAGCAGAGACAACAAACTCTACTGCAGGACAGACTACCAGagGTTGTTCTTGGTGCGCTGCAGGGCCTGCACTGAGGTCATCTCTCCGGCTGAGCTTGTGATGCACGCTGGGTCTGCAGTGTTCCACCTgcgctgcttctgctgctctgtgTGTTCCTGCAGACTGCAGAAGGGAGACCGCTGTGTGCTGGTGGGAGACAGACTGCTCTGCACCCGAGACTACCAGCACTCCCTGAGCAGCCCCACCACCTCTGACTCAGgtagaagtgaggatgaggatgatgaagatgaagagggGAACCTGAAAATGACAGGAGACGGAAACACAGCTGGAGATGGGGAGAAAAGGCCCAAACGGCCGCGTACTATCCTCACCACACAACAGAGACGAGCTTTTAAAGCCTCATTTGAGGTCTCATCCAAGCCGTGCAGAAAAGTAAGGGAGACATTGGCAGCAGAGACGGGTTTGAGTGTACGAGTTGTTCAGGTCTGGTTCCAGAACCAAAGAGCCAAGATGAAGAAGCTGGCCAGacgacagcagcagcaacagcagcaggtcCAGTCTCCACAAGAACAGAGAGACCCCCAAACACTACCCACTGCACCCTCTTGTGGACTGCCACCAGAACTGAAGAGCATGGACCTGTATGTATCTGTTCctcagcagcagaagcagcagcagactgTGACTGTGGATGCCCACAGCTTTAAACTAGACCCTTTCCGTCAGGGTTTAACCCCTCCTCAGATGCCGGGAGACCACATGAACCCATACGGCTGCGAGGCCTTGTACAGTGACGTGAACAGTGATCCACTCTGTCACCTTGGAGAGTGCCTACCGCTAGCAGAGACGTCCCTCCTGACGCCAATTGACCGGCTGTATTCAATGCATGACTCGTACTTTGCGTCCTGAGTGTaaggtgatgtgtgtgtgtgtgtgt

Function

NR:

description
PREDICTED: LIM homeobox transcription factor 1-alpha-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245496.3 True 1184 mRNA 0.55 8 74025605 74043117

Neighbor

gene id symbol gene type direction distance location
LOC103037051 si:dkey-51e6.1,LOC103037051,LOC108442414,LOC107555634,LOC107726439,LOC107696171,LOC105907105,LOC108257519 coding downstream 45871 73977191 ~ 73979734 (-)
c3h1orf112 cunh1orf112 coding downstream 54670 73955811 ~ 73970935 (-)
LOC103035214 NA coding downstream 85931 73931397 ~ 73939674 (-)
LOC103034242 pla2g4a,LOC108442417,LOC108257972,LOC106560559 coding downstream 212464 73784007 ~ 73813141 (-)
ppil6 ppil6 coding downstream 270089 73749986 ~ 73755516 (-)
LOC103038456 LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC106916811,LOC103142585 coding upstream 4822 74047939 ~ 74086439 (-)
G33099 NA non-coding downstream 33033 73991742 ~ 73992572 (-)
G33091 NA non-coding downstream 72063 73950912 ~ 73953542 (-)
G33076 LOC108442415,LOC108257608,LOC106560557,LOC107726497,LOC107696164 non-coding downstream 140691 73882893 ~ 73884914 (-)
G32937 NA non-coding downstream 489501 73533661 ~ 73536104 (-)
LOC111191385 NA non-coding downstream 697451 73326367 ~ 73328154 (-)
LOC111191425 NA other downstream 157067 73796463 ~ 73868538 (-)
ak9 ak9 other downstream 246739 73756908 ~ 73778866 (-)
G32946 NA other downstream 472722 73552415 ~ 73552883 (-)
G32914 NA other downstream 636993 73387862 ~ 73388612 (-)
LOC103029909 LOC108412949 other downstream 991819 72921906 ~ 73033786 (-)

Expression


Co-expression Network