LOC103029411


Basic Information

Item Value
gene id LOC103029411
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52321992 ~ 52327802 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252930.2
CTCCGCTCTGGGAGCTGCTTTGTGTTGGGTGAGTAACTTCTGCGTTACAGCGGGAAACTCCGGCGCGCGCTGTCTCTCCGGCAGTATGGAGCCCGGCGAGCAGCGGTGAGGAGTGTACGGAGCGCGAGAGATGACGATGGGAACTATGAACTGCAGCGAGCGCACCGACGTGCTGGCCGGCTCGCCCCGCACCTCGGCGGCGATGTTCGCGGCGGGGGTTCTGGGGAACGTGGTGGCTCTCGTGCTGCTGGAGGTCCGGCGGAGGAAGCAGAGCGCCTCTCTGTTCCAGTTGCTCGTGACCGCGATGGTCATCACCGACCTGCTGGGCACTTTCTCGGTCAGCCCGCTGGTCATCACCGCGTACGCGCAGAACCGCTCCCTGCTGGGTATGAGCGGAACGCGCGCCGTGTGCGCGCACTTCGGCTTCTCCATGACCTTCTTCAGCCTGGTGACGCTGGCCTTGTTGCTGGGCATGGCCGTGGAGCGCTGGCTCGCCATCGGACACCCGTACCTGTACGAGAGGCGCGTGAGCATGCGCTGCGGCTACGTGCTCCTGCCCGTGGTCTACCTGGCGTGCGCGCTCTTCTGCCTCGCGCCCTTACTGGACGACTGCTTCGGCAGGTACGTGCAGTACTGCCCGGGCACGTGGTGCTTCATCGACCTAAGCTCGAGGAGACCGGGACATATAGCCTATAAGAGCGTGTACGCCTCGTGCCTGCTGATCATGATCGCGTGCACCGTGCTGTGCAACGCCTCGGTCAGCTACCACCTGCTGCTCATGCACCGCCGCAGCAAGGCCAACCGCAGCTCCTTCAGGAGGTTCAGGGGGCAGCGCTCCCTCTCCATCACGGAGGAGGTGGAGCACCTGGTGCTGCTGGGCTTCATGACCATCGCCTTCGTCATCTGCTCTCTTCCTTTAGTGATCCGTGTGTATATGAACTCAAGTGACAATGCGATGGACCTCAAAGCTATGCTGTTGCTGTCCGTGAACCCAATCATTGACCCCTGGGTCTACATTATCCTCAGTCCACCAGTACCCCGCCTGCTCTGGGGAATGGTGTGTAAAGTCTTCAGATCCCAGTCGACCCGGGAAAAgatactgaacacacacacgcagacagagTCCTGGTCGTCCAACCCACCCATAGAGCTGCAGAAATAAAAGCTCAGCCACTGTGAAAGAGGACCTGAATAGAATACACCCCATGAGGGATCTGCAAGGCCGTCAGTGGGACCTTCTAAAGGACTCCCTACCAGGCCTTGTGCAGGATCATCCGCAGTACCTTTTACAGGACGAGATGGCCTGCAAGATAGTCTAAAGGACTGTCCAAAACACCACCTGCAGGACAGTCTATAGGACTGTGTAACAGGACTACCTGCAGGAGTGTTGACAGGACTGTATCAGACAGACAAGCACGCATGTAGAATCATCTACAGGATTATTTAAAAGGCTGCTGCAACGCCATCAATAGACCACCAATATAAGCATAGGTTAACCGGGCCATCTACAGGACCCTCTGGACTACCAGCTACAAGAATACACCCTCCGCAAGACCATCTTGAGGACTGTCTgactataaaatgtaaaaaagaccaCATGCAAGACAGACTACAGGACCGTTTGCAGGACATTCTCGGGGACCATCTGCAGGATTATCCACAGTCCCAGTGTCCTTCATTTTTTTCGGCCTTAGATGTTTACAAGTTTAAACTCTGGGCATATTTCTGTGTGAACATTAGCTCTAGTAgagttgtattgtttttttagtgaATCTTATGCAATGTTCTAATTTgctgggttctgattggccttggatttttaattaacatattttttgcactaaaaggcgcacttaaaatcctttaattt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG:

id description
K04259 PTGER2; prostaglandin E receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252930.2 True 1870 mRNA 0.55 2 52321992 52327802

Neighbor

gene id symbol gene type direction distance location
tmx3 tmx3 coding upstream 626975 51586207 ~ 51695017 (+)
dnajc13 dnajc13 coding upstream 737895 51503220 ~ 51584097 (+)
rngtt rngtt coding upstream 1099919 51192823 ~ 51222073 (+)
gabrr1 LOC108427508,LOC108256869,LOC102218978,LOC103457991,LOC103150855,LOC107392250,LOC108423527 coding upstream 1176597 51084068 ~ 51145395 (+)
LOC103030377 LOC108427479,LOC108256881 coding upstream 1291200 50980515 ~ 51030792 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 coding downstream 40081 52367883 ~ 52374147 (+)
ddhd1 NA coding downstream 55143 52382945 ~ 52400818 (+)
LOC103030894 NA coding downstream 76080 52403882 ~ 52412080 (+)
trnac-gca_8 NA coding downstream 140970 52468772 ~ 52468843 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding downstream 247136 52574938 ~ 52609821 (+)
G27684 NA non-coding upstream 6497 52315112 ~ 52315495 (+)
G27682 NA non-coding upstream 8758 52313035 ~ 52313234 (+)
G27681 NA non-coding upstream 10944 52310835 ~ 52311048 (+)
G27680 NA non-coding upstream 12054 52309727 ~ 52309938 (+)
G27678 NA non-coding upstream 17764 52303563 ~ 52304228 (+)
G27701 NA non-coding downstream 15146 52342948 ~ 52348256 (+)
LOC111188740 NA non-coding downstream 34203 52362005 ~ 52364172 (+)
G27716 NA non-coding downstream 52054 52379856 ~ 52381005 (+)
G27763 meis1,LOC103032373,LOC100690952,LOC106953003,LOC102195920 non-coding downstream 200926 52528728 ~ 52531000 (+)
G27772 NA non-coding downstream 276144 52603946 ~ 52693356 (+)
G27683 LOC108412685 other upstream 7726 52314025 ~ 52314266 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other upstream 231359 52083282 ~ 52090633 (+)
G27489 NA other upstream 1143618 51174488 ~ 51178374 (+)
lyrm2 lyrm2 other upstream 1549830 50769863 ~ 50772162 (+)
nup43 nup43 other upstream 1568031 50744883 ~ 50753961 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other downstream 126629 52454431 ~ 52456164 (+)
LOC111188765 glrx5,LOC106571612 other downstream 432311 52760113 ~ 52768976 (+)
trnah-gug NA other downstream 1295021 53622823 ~ 53622894 (+)
trnae-uuc_2 NA other downstream 1295380 53623182 ~ 53623253 (+)
trnar-acg NA other downstream 1295647 53623449 ~ 53623521 (+)

Expression


Co-expression Network