psmc6 (psmc6,LOC107668141,LOC107549540,LOC107582103)


Basic Information

Item Value
gene id psmc6
gene name psmc6,LOC107668141,LOC107549540,LOC107582103
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52367883 ~ 52374147 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252931.3
gctagctggctaaagctagtacagcagcagcagcagtagtatcgCAGGGGGATCATGGCTGACAGCAGGGAGAAGGGACTACAGGACTATAGGAAGAAATTACTGGAGCATAAAGAGATCGATGGGCGTCTGAAGGAGTtgaGGGAGCAGCTGAAGGAGCTCACCAAGCAGTATGAGAAGTCTGAGAATGACCTGAAGGCTCTGCAGAGTGTTGGTCAGATTGTTGGGGAGGTATTAAAACAGCTGACTGAGGAAAAGtTTATTGTAAAAGCTACCAATGGACCTCGATATGTGGTTGGCTGCCGGAGACAGCTGGACAAAACCAAGCTAAAGCCTGGAACCAGAGTGGCTCTGGACATGACCACACTCACCATCATGAGATATTTGCCACGTGAGGTCGACCCTCTGGTGTACAACATGTCGCATGAAGACCCAGGCAGCGTGTCGTATTCAGAGATTGGTGGACTGTCTGAGCAGATCCGCGAGCTCAGAGAGGTGATCGAACTGCCACTGACCAATCCTGAGCTCTTTCAGCGTGTGGGCATCATTCCCCCTAAGGGGTGCCTGCTGTATGGACCTCCAGGTACTGGAAAGACCCTTCTAGCTCGTGCTGTGGCCAGTCAGCTGGACTGCAATTTCTTAAAGGTGGTGTCCAGCTCTATTGTTGATAAATACATTGGTGAGAGTGCCAGGCTGATCAGAGAAATGTTCAACTATGCTCGGGACCACCAGCCATGCATCATCTTCATGGATGAAATCGACGCCATTGGGGGTCGCCGCTTTTCTGAGGGAACCTCTGCAGATAGAGAGATCCAAAGGACACTTATGGAGctTTTGAATCAAATGGATGGCTTTGACACTCTGCATAGAGTGAAGATGATCATGGCCACCAACCGCCCTGACACACTGGACCCAGCTCTGCTGCGACCCGGCAGACTGGACAGGAAGATCCACATCGAGCTGCCCAATGAACAGGCCCGTCTAGACATCCTAAAGATCCACTCTGGACCCATCACCAAGCATGGAGACATAGATTATGAAGCCATCGTCAAGCTCTCGGACGGTTTCAATGGAGCTGACTTGCGAAATGTCTGCACTGAGGCTGGAATGTTTGCCATTCGTGCTGACCGTGATTACGTAACTCAGGAGGATTTTATGAAGGCTGTGCGGAAAGTGGCAGATTCGAAGAAGCTGGAATCCAAGCTGGACTATAAGcctgtataaaatatttacgTGAGATCACAGCCGGTGGATGTTATGGAGACCATTCAGTACTTTTTGTTACTCTTAGTTGCAGaagatcttttttttgtgaactGTTGACCAGGGGCTTTTCTGATTATTACTGTCTCAATTAGTGTTACCATCCAGTGAGCTCAGCTGTAGGGAAACATATGTAGTCCAATACATCGACTGTTGGCCAAATATACAGGTCTTGAAAATTATAATACCAATTAGAACAATTTATATCACTATTATAAATAAGAGATGTTCCTTCCTGCCTTGTTATACATCATTAAAGTTTCATACTGAGTGA

Function

symbol description
psmc6 Predicted to enable ATP binding activity and peptidase activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within protein catabolic process and proteolysis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex and proteasome regulatory particle, base subcomplex. Orthologous to human PSMC6 (proteasome 26S subunit, ATPase 6).

NR:

description
26S protease regulatory subunit S10B

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K03064 PSMC6, RPT4; 26S proteasome regulatory subunit T4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252931.3 True 1537 mRNA 0.47 14 52367883 52374147

Neighbor

gene id symbol gene type direction distance location
LOC103029411 NA coding upstream 40081 52321992 ~ 52327802 (+)
tmx3 tmx3 coding upstream 672866 51586207 ~ 51695017 (+)
dnajc13 dnajc13 coding upstream 783786 51503220 ~ 51584097 (+)
rngtt rngtt coding upstream 1145810 51192823 ~ 51222073 (+)
gabrr1 LOC108427508,LOC108256869,LOC102218978,LOC103457991,LOC103150855,LOC107392250,LOC108423527 coding upstream 1222488 51084068 ~ 51145395 (+)
ddhd1 NA coding downstream 8798 52382945 ~ 52400818 (+)
LOC103030894 NA coding downstream 29735 52403882 ~ 52412080 (+)
trnac-gca_8 NA coding downstream 94625 52468772 ~ 52468843 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding downstream 200791 52574938 ~ 52609821 (+)
LOC111188745 NA coding downstream 395095 52769242 ~ 52781864 (+)
LOC111188740 NA non-coding upstream 3711 52362005 ~ 52364172 (+)
G27701 NA non-coding upstream 19627 52342948 ~ 52348256 (+)
G27684 NA non-coding upstream 52388 52315112 ~ 52315495 (+)
G27682 NA non-coding upstream 54649 52313035 ~ 52313234 (+)
G27681 NA non-coding upstream 56835 52310835 ~ 52311048 (+)
G27716 NA non-coding downstream 5709 52379856 ~ 52381005 (+)
G27763 meis1,LOC103032373,LOC100690952,LOC106953003,LOC102195920 non-coding downstream 154581 52528728 ~ 52531000 (+)
G27772 NA non-coding downstream 229799 52603946 ~ 52693356 (+)
G27775 c25h14orf132,LOC108413331,LOC105892943,LOC107549545,LOC107582175 non-coding downstream 293188 52667335 ~ 52672114 (+)
G27834 NA non-coding downstream 530173 52904320 ~ 52904678 (+)
G27683 LOC108412685 other upstream 53617 52314025 ~ 52314266 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other upstream 277250 52083282 ~ 52090633 (+)
G27489 NA other upstream 1189509 51174488 ~ 51178374 (+)
lyrm2 lyrm2 other upstream 1595721 50769863 ~ 50772162 (+)
nup43 nup43 other upstream 1613922 50744883 ~ 50753961 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other downstream 80284 52454431 ~ 52456164 (+)
LOC111188765 glrx5,LOC106571612 other downstream 385966 52760113 ~ 52768976 (+)
trnah-gug NA other downstream 1248676 53622823 ~ 53622894 (+)
trnae-uuc_2 NA other downstream 1249035 53623182 ~ 53623253 (+)
trnar-acg NA other downstream 1249302 53623449 ~ 53623521 (+)

Expression


Co-expression Network