LOC103030894


Basic Information

Item Value
gene id LOC103030894
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52403882 ~ 52412080 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252934.3
ACAAACTCAAATGgggggaggcagtgagcggggGCTCCTTTGAGAAGCTTTAAGAAAACAGCAGATCTGAAGAAAGAAGAAGCAGGAGACCAGAGAGAGCCACCAGAGGCCCCTGGCACACTGATGATGAACATCCAGTCCAACATCAGCAGGGAAATCTTTGCCCCACAAGACGAGAAGTTACTGGTAGCTATTGaggtgaagaagaggaggaaaagGAGGCTGCCCTTCCTCACAGCTGGAAGGAAGAGAGACTATGTGACCTTCCTTTGCCTGTCAGTTACGAATAAGCGACCTTCTCAGGTCTTCATCACGAAGGTGAAGCAGTATCCTGGCTCTCCACGTTTTACCAAACGGTCCCAGTGGTCTGTAGAGCAGCTCCGCCGGGTCGATGGCATCAACCCCAACAAGGACACTCCAGAGTTTGATCTGGGGTTCGACCACAACCTTGACCAGTGGGTAGCCGGCTCGTCTGCAGAGAAGTGCATGTTTGTGCAGATTCTCTATCATGCCTGCCAGAACTACTGGGGTGGAAAGCTCGGGCTTGGGGCTGCTGGAAGTCAGAAGGGCCCAGGGGCCTCAGGGGAACAGCCAGATCCTGCAGGAGCtgtggaaaagaaaaaagcccCAAACGCTCCACGGCCAACAGAGTTCGTCAACTGCCAGTCCAAACTAATGGGTGATGCCTGCTCTGTCAACATGGTCATCTACcgctgtaagattttcctgaACCGCATGAAGAACACAATGATTGCAAGCCCTAGCCAGCTTGAAATTGCTGGCCTGAAAGCCCCCGCCACCAAAGCTGCCGCCACCAAAGCCGCCACCTCCAAAGCCGCCGCCTCCAAAGCAGCCGCCTCCAAAGCTTCCACCACTAAAGCCTCCACTGCTAAAGCCTCCACTGCTAAGGCCCCCTCTACTAAATTCTTCAAGCCTGTCTCCTCTCCTCCAGCCCAGAGGAGTGTGGGTAGTGTAGTTCGCAGGGCCAGTCATGTGCTGTCTGACCGCGACTTCAGGGTTGCAAgacaaatggcaaaacaaagaAGGTCCAGTTTCCCGAAAGCTTTTTAGTATTAAGATCATCTTAACTACTTGAGAGAGAGTTTCATGTGAGGCTCACTCTGAGGCTTATGGGAATTCCAACCCTGGaaggtgtctgtgtgtgttggccTGTGAAGCACTAGGGGTCAGCATTGCTTCACAAAGGaaggtttgctttttttttgcctgtagGAAAGTAGAAGCTATTTTGTATAATATGTAGCTGAATAATGAAATGGTTTAAATGGTGTCACTGGGCATGCTCTTGGTGAGACTTGTGTAATATGTGCTGCTTAAGTGTTATGTCCAGACATGGTTTAAATGTTCTGCTGGTATTTCTTACCGAGGATGACCTGTTTGGGcttatttgtcttattttattAGTATATCAGCACTGCTGAATACTGAATATGCACCTTCAAATTAATGTATAATTGTATTGCTGTAGTTCCGCAACTGGGTAGCAAAATTAAACAAGTCCAGTTCGTGCATTGAGGAGAGGTAAAAAGATTGATATTTAGTGAAAGTAAAAAGTCAGATTGttacaaaataagaaaatactaaacacaagttgctttaaaatatgaattcactaagaaataaaacatcagaacaaagtgaaaaaaatataagagtatgaaagtaagaaaaaaatattagtagATGAGATGAACAGTAGACTAAGATCACTTTAAAATGTGTACTGGCCTGTGTTATAAAACTGACCcctattaaaattaattaaaatccattaaaaatTTGTGGACCCCTAGATATCCAACATATTATGTTTGTAACtaattgcaataatacataACTTTCTATAATTTCCAGGAATATTTACCTCACTAAAATCACACACATCCTCTCTTAGCAGCTAAAAGTGATTTATATCCCACATAATTTGCGTTTTAGTTAAATATGTACTGGTATAGTTTACCCTTAAAATACAACTGAAAAGTTAGTGTCCGCAAACTTTTGGCAGGCAGCGAATGTACCAACTCAAGCTGCAGGACATTTGTTTGTCTTCTGATTACTCTGTATTCATATATTTAGATCATGTCATTTTGAATTATGTGTGTCCTTCGGTGATAAAAAACACctatatgtattttaatcatGTCCAAAGTCATCTACTAATGCTTTTAACATTAATGACTGTCGTCAGGTATGAAGCACTCAGAGTTGATGTTATGACTCAGAAGTACTGTGCTGTTGTTTCTGTGTATAACTGTATTAACTGAACTCTGCTGTAACTGTTGTTGCTGTCTGTGTCCTTGTCTCAGGTAAATATACCTGTCTGAATGTTAACTTGTTTCTGTTCGtcagtaaatgaaaaaaaaaatca
>XM_007252935.3
ACAAACTCAAATGgggggaggcagtgagcggggGCTCCTTTGAGAAGCTTTAAGAAAACAGCAGATCTGAAGAAAGAAGAAGCAGGAGACCAGAGAGAGCCACCAGAGGCCCCTGGCACACTGATGATGAACATCCAGTCCAACATCAGCAGGGAAATCTTTGCCCCACAAGACGAGAAGTTACTGGTAGCTATTGaggtgaagaagaggaggaaaagGAGGCTGCCCTTCCTCACAGCTGGAAGGAAGAGAGACTATGTGACCTTCCTTTGCCTGTCAGTTACGAATAAGCGACCTTCTCAGGTCTTCATCACGAAGGTGAAGCAGTATCCTGGCTCTCCACGTTTTACCAAACGGTCCCAGTGGTCTGTAGAGCAGCTCCGCCGGGTCGATGGCATCAACCCCAACAAGGACACTCCAGAGTTTGATCTGGGGTTCGACCACAACCTTGACCAGTGGGTAGCCGGCTCGTCTGCAGAGAAGTGCATGTTTGTGCAGATTCTCTATCATGCCTGCCAGAACTACTGGGGTGGAAAGCTCGGGCTTGGGGCTGCTGGAAGTCAGAAGGGCCCAGGGGCCTCAGGGGAACAGCCAGATCCTGCAGGAGCtgtggaaaagaaaaaagcccCAAACGCTCCACGGCCAACAGAGTTCGTCAACTGCCAGTCCAAACTAATGGGTGATGCCTGCTCTGTCAACATGGTCATCTACcgctgtaagattttcctgaACCGCATGAAGAACACAATGATTGCAAGCCCTAGCCAGCTTGAAATTGCTGGCCTGAAAGCCCCCGCCACCAAAGCTGCCGCCACCAAAGCCGCCACCTCCAAAGCCGCCGCCTCCAAAGCAGCCGCCTCCAAAGCTTCCACCACTAAAGCCTCCACTGCTAAAGCCTCCACTGCTAAGGCCCCCTCTACTAAATTCTTCAAGCCTGTCTCCTCTCCTCCAGCCCAGAGGAGTGTGGGTAGTGTAGTTCGCAGGGCCAGTCATGTGCTGTCTGACCGCGACTTCAGGGTTGCAAgacaaatggcaaaacaaagaAGTTTGCCTTAAATGGATCAGATGCCCTGTCCAGTGCACCTCTAATCTCCTTGTTTAATGATCCCTATGCCATTTGTGTGGCtttaccttctttttttttggtacatgAAGGATCTAACACCCTTCCCTCTACAGAACTGAGCTGGATTGGACTGGACTAATGCAATGCTTCTGTCTCTGAATGTCTCTTCACTTCTCCAGGTCCAGTTTCCCGAAAGCTTTTTAGTATTAAGATCATCTTAACTACTTGAGAGAGAGTTTCATGTGAGGCTCACTCTGAGGCTTATGGGAATTCCAACCCTGGaaggtgtctgtgtgtgttggccTGTGAAGCACTAGGGGTCAGCATTGCTTCACAAAGGaaggtttgctttttttttgcctgtagGAAAGTAGAAGCTATTTTGTATAATATGTAGCTGAATAATGAAATGGTTTAAATGGTGTCACTGGGCATGCTCTTGGTGAGACTTGTGTAATATGTGCTGCTTAAGTGTTATGTCCAGACATGGTTTAAATGTTCTGCTGGTATTTCTTACCGAGGATGACCTGTTTGGGcttatttgtcttattttattAGTATATCAGCACTGCTGAATACTGAATATGCACCTTCAAATTAATGTATAATTGTATTGCTGTAGTTCCGCAACTGGGTAGCAAAATTAAACAAGTCCAGTTCGTGCATTGAGGAGAGGTAAAAAGATTGATATTTAGTGAAAGTAAAAAGTCAGATTGttacaaaataagaaaatactaaacacaagttgctttaaaatatgaattcactaagaaataaaacatcagaacaaagtgaaaaaaatataagagtatgaaagtaagaaaaaaatattagtagATGAGATGAACAGTAGACTAAGATCACTTTAAAATGTGTACTGGCCTGTGTTATAAAACTGACCcctattaaaattaattaaaatccattaaaaatTTGTGGACCCCTAGATATCCAACATATTATGTTTGTAACtaattgcaataatacataACTTTCTATAATTTCCAGGAATATTTACCTCACTAAAATCACACACATCCTCTCTTAGCAGCTAAAAGTGATTTATATCCCACATAATTTGCGTTTTAGTTAAATATGTACTGGTATAGTTTACCCTTAAAATACAACTGAAAAGTTAGTGTCCGCAAACTTTTGGCAGGCAGCGAATGTACCAACTCAAGCTGCAGGACATTTGTTTGTCTTCTGATTACTCTGTATTCATATATTTAGATCATGTCATTTTGAATTATGTGTGTCCTTCGGTGATAAAAAACACctatatgtattttaatcatGTCCAAAGTCATCTACTAATGCTTTTAACATTAATGACTGTCGTCAGGTATGAAGCACTCAGAGTTGATGTTATGACTCAGAAGTACTGTGCTGTTGTTTCTGTGTATAACTGTATTAACTGAACTCTGCTGTAACTGTTGTTGCTGTCTGTGTCCTTGTCTCAGGTAAATATACCTGTCTGAATGTTAACTTGTTTCTGTTCGtcagtaaatgaaaaaaaaaatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252934.3 False 2389 mRNA 0.43 7 52403882 52412080
XM_007252935.3 True 2588 mRNA 0.43 7 52403882 52412080

Neighbor

gene id symbol gene type direction distance location
ddhd1 NA coding upstream 3064 52382945 ~ 52400818 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 coding upstream 29735 52367883 ~ 52374147 (+)
LOC103029411 NA coding upstream 76080 52321992 ~ 52327802 (+)
tmx3 tmx3 coding upstream 708865 51586207 ~ 51695017 (+)
dnajc13 dnajc13 coding upstream 819785 51503220 ~ 51584097 (+)
trnac-gca_8 NA coding downstream 56692 52468772 ~ 52468843 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding downstream 162858 52574938 ~ 52609821 (+)
LOC111188745 NA coding downstream 357162 52769242 ~ 52781864 (+)
LOC103033541 LOC108413844,LOC108417958 coding downstream 373579 52785659 ~ 52789369 (+)
LOC111188773 LOC108417958 coding downstream 398973 52811053 ~ 52816494 (+)
G27716 NA non-coding upstream 22877 52379856 ~ 52381005 (+)
LOC111188740 NA non-coding upstream 39710 52362005 ~ 52364172 (+)
G27701 NA non-coding upstream 55626 52342948 ~ 52348256 (+)
G27684 NA non-coding upstream 88387 52315112 ~ 52315495 (+)
G27682 NA non-coding upstream 90648 52313035 ~ 52313234 (+)
G27763 meis1,LOC103032373,LOC100690952,LOC106953003,LOC102195920 non-coding downstream 116648 52528728 ~ 52531000 (+)
G27772 NA non-coding downstream 191866 52603946 ~ 52693356 (+)
G27775 c25h14orf132,LOC108413331,LOC105892943,LOC107549545,LOC107582175 non-coding downstream 255255 52667335 ~ 52672114 (+)
G27834 NA non-coding downstream 492240 52904320 ~ 52904678 (+)
G27849 NA non-coding downstream 617729 53029809 ~ 53030010 (+)
G27683 LOC108412685 other upstream 89616 52314025 ~ 52314266 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other upstream 313249 52083282 ~ 52090633 (+)
G27489 NA other upstream 1225508 51174488 ~ 51178374 (+)
lyrm2 lyrm2 other upstream 1631720 50769863 ~ 50772162 (+)
nup43 nup43 other upstream 1649921 50744883 ~ 50753961 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other downstream 42351 52454431 ~ 52456164 (+)
LOC111188765 glrx5,LOC106571612 other downstream 348033 52760113 ~ 52768976 (+)
trnah-gug NA other downstream 1210743 53622823 ~ 53622894 (+)
trnae-uuc_2 NA other downstream 1211102 53623182 ~ 53623253 (+)
trnar-acg NA other downstream 1211369 53623449 ~ 53623521 (+)

Expression


Co-expression Network