LOC103035653 (flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229)


Basic Information

Item Value
gene id LOC103035653
gene name flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53333965 ~ 53410069 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252948.3
atggctGTGAGAGGAGTATCAGGACGGATCGAGGAGAGGAGTACAGGAGTAGATCTGCTCCCTCTGTCCTAATGCAGCAGTGAGAAGGGGCGTGGGGGCAGGAGCGGAGGGCAGAGGGACAGCAGGGGGGTGGAATGTGGTGCTGGAATAAGAAGAAGAGTTTGTGAcggactgctgctgctgttggaaTAACTCTGTGGTGTTGGGAGATGGATAAGAGCGCGCGTGCATGAAGAACAGAGCGCacaggaggagaaggaggagggcAGCATGGACACGCGCAGGGGGGCAGAGGTCTCAGACTCCAGATGTCCGGTCCCCTGGAGTTTTCCTGGGTTCAGCCCCAGTGGAGTGTGACGGCCGGGCTGGAGGAGGCATGGGCCGGGCGCTGGGCACCATGAGTCCTGGCCATGCTCTGATATTTTAGCATGGATGGCGCCAGCAGCAGAACCTGCGCCCACTAACGAAACTACTGGACTGCTGAGGTGCAGGACTAGCAATTACAGAAGGATTAGCTCTCTGACTTCCTGTGAACTTTGCATTAGTGAAAGCTTTTAAAGGACTTCCTCTTTCTTCCGTTGGATTTACTTCATCTCCACTCTCCTCCCTCAATCCACAGAtcttgtgtttattattattactacagttttttttttttatctccttcTCATCCCCACCTGTCCCACAATGGAGTTCCAGGTGGGACTGTGGAATAATGATTGGACCTCTTTTGTTCGGTTTTGGTTTACTGTGCTTCTGAGCCTGCAAGTGCAGTTTGGCCCTGTGGCCTCCTGTCCCAAAGAGTGCCGCTGCGACAAAACATTTGTTTACTGTAATGAGAGGAGTCTGACATCTGTGCCTCTGGGGGTGCAGGAGGGATACAAAACCCTCTATCTCCACAACAACCAGATCAACAACGCCGGCTTTCCACTGGAGCTGCACAACGTGGCTTCTGTGGACACGGTCGTCTTGTACGGGAACCAGCTGGATGAGTTCCCCCTCAACTTGCCGAAGAATGTAAGAGTACTGCACCTGCAGGAGAACAACATCCAGACCATTTCCAGGGCAGCCCTGGCCCAGCTACCAATGCTGGAAGAACTGCATCTGGACGATAACTCCATCTCCACTGTTGGGGTAGAGGAAGGGGCTTTTCGAGAAGCCGTAAGCCTCAAACTCCTCTTCCTCACCAAGAATCACCTGAGCAGCATCCCCATCGGATTACCAGTGGACCTGAAGGAACTGCGCTTGGACGAGAATCGGATTGCTGAAATAGACGAAGACGCTTTTCAGAACGTCACCAACCTGCAGAGACTCCTTTTGGACGGCAACCTTTTGGAAGATGAGGCCATTGCTCCTGGAACTTTCCAGAACCTAGACAAGCTGAGAGAGCTGTCTTTGTCCAGGAACTCTTTGACGGCCCCACCACCACTTCTTCCTGGGGGTTCCCTGGTCAAGCTCAATCTGCAAGAGAACCAGATGCAAGACATCCCAGTGACAGCTTTCTTTGGGCTTGGAAAGCTGGAGAAACTTGATATTTCATACAACTTGCTTCAGACTTTGCCACTGGGAGTCTTTGATGGCCTGAATAGTTTAACACATCTCTTTGTGCGGAACAACCAGTGGCTCTGCGATTGCTCCATCAAGTGGGTCATCGCCTGGCTCAAGTCCCTCAAGTCCTCTTTAAATGTCCGTGGGTTCACGTGTTACAAGCCGGAAAGAGTACGGGGGATGGTGATTCGAGAGCTCACTCTAGAAGCCCTCCAGTGCCCGGCTGGCACAGAACTCCATCCATGGGTCACTCAGGTACCTACATCTCCTTCGACAACACCTCACAGAACCACAAGTACTCCCAGAAACACCCGTACAACCATTACCCCATTCACAACTTTGCACCCAACATCATCCAGTTCACCCACACCACCCTTAGTCCATATCCCAGTCGGTCGCTTTCCTCCCTTGGGTGACCCCTTGAAACTATTCTTGAATGTAGTGAACTCCACCTGCATAGAGGCGAGCTGGGAGTCCTATTTCACTGTCACGGCTTACAAAATCACCTGGGTTAAGAGAAGCAAAGGTCTGATGACAGACAAGAGCCAAGAAAGGACGGTCTCAGGAGATCAGAGGAGGCTTACTTTGTCAACCCTGGAGCCACGATCTACGTACCGCGTCTGCGTTTATGTTCTGGATACTCTTAACAGTTACAGACCAGGAGAGGACACAATGTGTTTggaaatcaagaccaagacagcTCCGATCAACTCCAATACGGTTACGGAGTCTGAGCAGGCAGCCCGGCAGGACAACAATTCCACGCTCCTTTTGGCAGGAGTGATAGGCGGAGTCGTGTTTGTGGTCTTAGTGACTCTTCTCAGCCTGTTTTGCTGGCACATGCACAAGAAGAGCAGGTCGTCCTCGTCCAAATGGAAATATAACAGGGGCAGGAGAAAAGACGACTACTGCGAGGCTGGCACCAAAAAGGATAACTCTATCCTGGAAATGACTGAAACCAGCTTTCAGATAGTTTCACTGAACAATGAGCAGCTCTTAAAGGGCGATTTTAGAATCCAGCCCATCTACACCCCCAATGGAGGCATGGGCTACAGAGACTGCCATCTCAGTAACAATAGCATCGCTTACTGCAAAAGCAGCAATGTTCCAGCTGTGGACTTCTGCCACACGTGATACGCGCTACAACCTTTTTGGAAGAAAATGTAgttccgtaaaaaaaaaaaaaaacatatactgtacaatatgcatatacatattatataaatatatatatatatatatatttccaggTTGAGTCGACATGGTAATTTATACTGTGGACAATTATGTGGAATTcagctgttctttttttatctgattcttagtaaatataatacaaatggGTTTGTAATTAATGGGGCTTTACTGTGGTTTTACTCGAGGGTGGCGCAGTTGTATTTGTACAATCATGGCACGTCGGATCTGGTCTATCTGGTGTATGGGTCCACCCCAGGGTTCGGTTCTCTGCCTCATGGGTGTTAAACACAGGCCTGGAAACTTTGCTAACCACAGAATCTCAATATGCCCTTTACTCTGAAATACAGCGACTCTTTTCATACAACCAACGGTAGTTAagacaacacagcgggcaggaAAACTAAACACTGCTGATTAGCCTGCGGGCTTGGGCTGGGCTGGGCTGGGGTTGGGTGGGGTGTTGAGGTGGTGAGGGGGTCTAGAGGGGGTTAACTAACATAGGAGCTGTtttgttatgatttttttttttttttttaagtttttcttcttctctgcaaAAGAAATGAAGTGCACTTTCCTAATATGTGAGCGAGAGTGCAAGTAGCCATTCAGGAAATGAGCTTTTGGCTTTTGTGGAAGTGAAAGAGAAAAGGTTACACGTTTTCCAATGCCCCCCCAAAAAACTCACACAGGGCAAGCGAACAACACTGAATGAGCTAGAATGCCAGAAGTGCTTTACCGGCCAGCTTTCACcagggttttcttttttttatatatatataaattatttttggtttattgttgttACCACCAGAGGGCAGATGTTTTTTGCATCTTTCAGGTTTCAGCAAAAAAa
>XM_007252949.2
gctgctgctcacttCTTCTGTTTTGTAACTTCAGTGTTTAGGGTTGATTTGCTTCGTTCCATCTGGGAAtcgctgtgctgtgtgtgtatgtgagtgtgtgcagatgtgggtgtgtgtgtgtgtgtgggtgtgagtgagtaagtgagtgtgtgtgtttgtgactcCAGGAAGGAGGATCTCATTGTGACCCACTTTGACCCTGACGCCTATAGAGGTCTCAGACTCCAGATGTCCGGTCCCCTGGAGTTTTCCTGGGTTCAGCCCCAGTGGAGTGTGACGGCCGGGCTGGAGGAGGCATGGGCCGGGCGCTGGGCACCATGAGTCCTGGCCATGCTCTGATATTTTAGCATGGATGGCGCCAGCAGCAGAACCTGCGCCCACTAACGAAACTACTGGACTGCTGAGGTGCAGGACTAGCAATTACAGAAGGATTAGCTCTCTGACTTCCTGTGAACTTTGCATTAGTGAAAGCTTTTAAAGGACTTCCTCTTTCTTCCGTTGGATTTACTTCATCTCCACTCTCCTCCCTCAATCCACAGAtcttgtgtttattattattactacagttttttttttttatctccttcTCATCCCCACCTGTCCCACAATGGAGTTCCAGGTGGGACTGTGGAATAATGATTGGACCTCTTTTGTTCGGTTTTGGTTTACTGTGCTTCTGAGCCTGCAAGTGCAGTTTGGCCCTGTGGCCTCCTGTCCCAAAGAGTGCCGCTGCGACAAAACATTTGTTTACTGTAATGAGAGGAGTCTGACATCTGTGCCTCTGGGGGTGCAGGAGGGATACAAAACCCTCTATCTCCACAACAACCAGATCAACAACGCCGGCTTTCCACTGGAGCTGCACAACGTGGCTTCTGTGGACACGGTCGTCTTGTACGGGAACCAGCTGGATGAGTTCCCCCTCAACTTGCCGAAGAATGTAAGAGTACTGCACCTGCAGGAGAACAACATCCAGACCATTTCCAGGGCAGCCCTGGCCCAGCTACCAATGCTGGAAGAACTGCATCTGGACGATAACTCCATCTCCACTGTTGGGGTAGAGGAAGGGGCTTTTCGAGAAGCCGTAAGCCTCAAACTCCTCTTCCTCACCAAGAATCACCTGAGCAGCATCCCCATCGGATTACCAGTGGACCTGAAGGAACTGCGCTTGGACGAGAATCGGATTGCTGAAATAGACGAAGACGCTTTTCAGAACGTCACCAACCTGCAGAGACTCCTTTTGGACGGCAACCTTTTGGAAGATGAGGCCATTGCTCCTGGAACTTTCCAGAACCTAGACAAGCTGAGAGAGCTGTCTTTGTCCAGGAACTCTTTGACGGCCCCACCACCACTTCTTCCTGGGGGTTCCCTGGTCAAGCTCAATCTGCAAGAGAACCAGATGCAAGACATCCCAGTGACAGCTTTCTTTGGGCTTGGAAAGCTGGAGAAACTTGATATTTCATACAACTTGCTTCAGACTTTGCCACTGGGAGTCTTTGATGGCCTGAATAGTTTAACACATCTCTTTGTGCGGAACAACCAGTGGCTCTGCGATTGCTCCATCAAGTGGGTCATCGCCTGGCTCAAGTCCCTCAAGTCCTCTTTAAATGTCCGTGGGTTCACGTGTTACAAGCCGGAAAGAGTACGGGGGATGGTGATTCGAGAGCTCACTCTAGAAGCCCTCCAGTGCCCGGCTGGCACAGAACTCCATCCATGGGTCACTCAGGTACCTACATCTCCTTCGACAACACCTCACAGAACCACAAGTACTCCCAGAAACACCCGTACAACCATTACCCCATTCACAACTTTGCACCCAACATCATCCAGTTCACCCACACCACCCTTAGTCCATATCCCAGTCGGTCGCTTTCCTCCCTTGGGTGACCCCTTGAAACTATTCTTGAATGTAGTGAACTCCACCTGCATAGAGGCGAGCTGGGAGTCCTATTTCACTGTCACGGCTTACAAAATCACCTGGGTTAAGAGAAGCAAAGGTCTGATGACAGACAAGAGCCAAGAAAGGACGGTCTCAGGAGATCAGAGGAGGCTTACTTTGTCAACCCTGGAGCCACGATCTACGTACCGCGTCTGCGTTTATGTTCTGGATACTCTTAACAGTTACAGACCAGGAGAGGACACAATGTGTTTggaaatcaagaccaagacagcTCCGATCAACTCCAATACGGTTACGGAGTCTGAGCAGGCAGCCCGGCAGGACAACAATTCCACGCTCCTTTTGGCAGGAGTGATAGGCGGAGTCGTGTTTGTGGTCTTAGTGACTCTTCTCAGCCTGTTTTGCTGGCACATGCACAAGAAGAGCAGGTCGTCCTCGTCCAAATGGAAATATAACAGGGGCAGGAGAAAAGACGACTACTGCGAGGCTGGCACCAAAAAGGATAACTCTATCCTGGAAATGACTGAAACCAGCTTTCAGATAGTTTCACTGAACAATGAGCAGCTCTTAAAGGGCGATTTTAGAATCCAGCCCATCTACACCCCCAATGGAGGCATGGGCTACAGAGACTGCCATCTCAGTAACAATAGCATCGCTTACTGCAAAAGCAGCAATGTTCCAGCTGTGGACTTCTGCCACACGTGATACGCGCTACAACCTTTTTGGAAGAAAATGTAgttccgtaaaaaaaaaaaaaaacatatactgtacaatatgcatatacatattatataaatatatatatatatatatatttccaggTTGAGTCGACATGGTAATTTATACTGTGGACAATTATGTGGAATTcagctgttctttttttatctgattcttagtaaatataatacaaatggGTTTGTAATTAATGGGGCTTTACTGTGGTTTTACTCGAGGGTGGCGCAGTTGTATTTGTACAATCATGGCACGTCGGATCTGGTCTATCTGGTGTATGGGTCCACCCCAGGGTTCGGTTCTCTGCCTCATGGGTGTTAAACACAGGCCTGGAAACTTTGCTAACCACAGAATCTCAATATGCCCTTTACTCTGAAATACAGCGACTCTTTTCATACAACCAACGGTAGTTAagacaacacagcgggcaggaAAACTAAACACTGCTGATTAGCCTGCGGGCTTGGGCTGGGCTGGGCTGGGGTTGGGTGGGGTGTTGAGGTGGTGAGGGGGTCTAGAGGGGGTTAACTAACATAGGAGCTGTtttgttatgatttttttttttttttttaagtttttcttcttctctgcaaAAGAAATGAAGTGCACTTTCCTAATATGTGAGCGAGAGTGCAAGTAGCCATTCAGGAAATGAGCTTTTGGCTTTTGTGGAAGTGAAAGAGAAAAGGTTACACGTTTTCCAATGCCCCCCCAAAAAACTCACACAGGGCAAGCGAACAACACTGAATGAGCTAGAATGCCAGAAGTGCTTTACCGGCCAGCTTTCACcagggttttcttttttttatatatatataaattatttttggtttattgttgttACCACCAGAGGGCAGATGTTTTTTGCATCTTTCAGGTTTCAGCAAAAAAa

Function

symbol description
flrt2 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in brain; neurons; pronephros; and solid lens vesicle. Orthologous to human FLRT2 (fibronectin leucine rich transmembrane protein 2).

NR:

description
PREDICTED: leucine-rich repeat transmembrane protein FLRT2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252948.3 True 3601 mRNA 0.48 2 53333965 53344744
XM_007252949.2 False 3521 mRNA 0.48 2 53333965 53410069

Neighbor

gene id symbol gene type direction distance location
glrx5 glrx5,LOC106571612 coding downstream 568121 52760053 ~ 52765844 (-)
LOC107197707 c25h14orf132,LOC108413331,LOC107549545,LOC107582175 coding downstream 616898 52670111 ~ 52717067 (-)
LOC103041285 LOC108413330 coding downstream 692381 52640295 ~ 52641584 (-)
LOC103032373 meis2b,LOC103032373,LOC108413876,LOC107582109,LOC107664830,LOC107668148 coding downstream 779693 52525768 ~ 52554272 (-)
LOC111188512 NA coding downstream 843078 52484734 ~ 52490887 (-)
med23 med23 coding upstream 279298 53689367 ~ 53715908 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding upstream 753033 54163102 ~ 54190321 (-)
tab2 tab2 coding upstream 1057948 54468017 ~ 54524305 (-)
nus1 nus1,LOC107736830 coding upstream 1231946 54642015 ~ 54652464 (-)
LOC103032288 LOC108424430 coding upstream 1245335 54655404 ~ 54659026 (-)
G27883 NA non-coding downstream 7277 53307642 ~ 53326688 (-)
LOC111191924 NA non-coding downstream 109816 53222854 ~ 53224149 (-)
G27869 NA non-coding downstream 149316 53183929 ~ 53184649 (-)
G27862 NA non-coding downstream 241338 53091024 ~ 53092627 (-)
G27857 NA non-coding downstream 253725 53079808 ~ 53080240 (-)
G27906 NA non-coding upstream 47736 53457805 ~ 53529684 (-)
G27911 NA non-coding upstream 89815 53499884 ~ 53504832 (-)
G27918 NA non-coding upstream 124571 53534640 ~ 53534997 (-)
G27919 NA non-coding upstream 131792 53541861 ~ 53542276 (-)
G27920 NA non-coding upstream 151202 53561271 ~ 53561525 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 484059 52786472 ~ 52849906 (-)
LOC103040973 NA other downstream 1012045 52293880 ~ 52321920 (-)
pcmt1 pcmt1 other downstream 2593531 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 2794293 50522899 ~ 50539672 (-)
G27400 NA other downstream 2802326 50481889 ~ 50531639 (-)
trnal-cag NA other upstream 212002 53622071 ~ 53622358 (-)
akap7 NA other upstream 332811 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 639726 54049795 ~ 54055697 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 1146819 54556888 ~ 54623840 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 1856022 55266091 ~ 55314179 (-)

Expression


Co-expression Network