LOC103042812 (zbtb2,zbtb2b,LOC103042812,LOC108424498)


Basic Information

Item Value
gene id LOC103042812
gene name zbtb2,zbtb2b,LOC103042812,LOC108424498
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55936150 ~ 55948950 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253894.3
AAACGTTGTTACCGCGGCTCGGCTCCGCGCCGCTCTGCGCTGTGTGTTTTCTCTCGGCCGCCCGTTAGGGGGGTAACTCAGTCCTCAGGCTTCAGCAAACTGCCGTTTTTAAGTCCCTTCAGCCCGAGTCATGTGATTTGTAACGTAACCCGACCGGAAAACACCGACAACCACCGCCGCCAATGCTGCGCTCTAGAGGAGCAGAGCAGCTGCGAGGCCAACGGACACGGATCCCggtaacaacaacaacaaacacgGCCGAGTCCGCGGACTAACCCGGCGGAAAGGTGGAAGTATGGAGCTGGCCAACCATGGTCTTATCCTCCTGCAGCAGCTCAACGCACAGAGGGAGTTCGGCTTCCTGTGTGACTGCACAGTTGCCATTGGTGACGTCTTTTTTAAAGCACACAAAGCTGTGCTGGCCGCCTTCTCCAACTACTTCAGAATGTTGTTCATTCACCAGGACAGCGACTGTGTTCGCCTGAAGCCTGCAGACATCCAGCCTGATATCTTCAGCTACCTCCTCAACCTGATGTACACTGGCAAACTGGCACCGCAGCTAATAGACCCGGCCCGACTAGAGCAGGGCGTGAAGTTCCTGCATGCCTACCCTCTTATCCAGGAGGCTAGTCTGGCTAGCCAGGTAGCTTTCTCTCATCCCGAACCCAACATTCGCCTTTCCACTTCTCTCTACGGCATTCAGATATCAGACCAACAAGGAACGTCGTCTAGCAGGCTATCAGCCAGGAGGCAGTCTTCACCTATTGACTCGGATAGCACAGGTGCACTTGATACAAAGTGCTCCACCGCGAGTGTGTCTTTCCTGCAGGCTGGGACTGGATCCAGACTTCAGTCAGACATGGAAGTAGAGGCATCCTCAAGCCATGTGCTGTTTGGTAGAGAGGGGTGTGAGGTGGATACCCCAGCCAGCGAGGCTCTTTCTGCGTCAGTCAGCGCCAACAGCAACACCATTCTTCATGTGAAGCCCAGCATCATGCGTAGAAGCTCTTCGTTCAGAAAGCACTACACATGCCATCTCTGTGGGAGTCGCTTCAACCAGCGGGCAGCTCTGAGGGAGCATCTCCTCTGGCACGCACAGGCTGTGCCTCCTCTTGTGGTGGAAGCAGATTCCCCGATAATGCCTGGAGGAGCTGCCACGCCTGAGGTTGAGGAAGTTCTTACAGGCGTTGGGGCTGCTGCAGCCACCCCTATCATGGTGGATATGGCCAGCGATGGTGAACAACCTCTTACTGGCGCTAAAGTCTCCCCGCATGCCGACACGGCCGTTGCAGTTCCTTCGACTGCGGCGGCGAGTTTATGTGCAGCCCAGCCCCAGGCAGACACGCCACCTCCATCTGATATAGCCGACATCGACAACCTGGAGGGTGCAGCAGATGTGGAGCGGGAGGTCAAGAGGAGAAAGTACGAGTGCTCCACCTGCGGACGCAAGTTCATCCAGAAGAGCCATTGGCGAGAGCACATGTACATCCACACGGGAAAGCCGTACCGTTGCAGCGCTTGCGGAAAGAGCTTCTGCCGGGCCAACCAGGCCGCGCGCCATGTCTGCTTAAGCCAGGGGGCCGAGTCGGCGTACACCATGGTGGACCGACAGAGCATGGAGCTGTGTGCGGCCGATGACTCCAGCCAGATGGAGGCGCTGTTTCTTGGCTCTTCGGGAAGACCCTACAAGTGTAACGTGTGTGAAATGACCTTCTCCAACCCCAACGAAGTCATTAAGCATCAGTGCTTCAACCAAGGCTCCCTCTCTGACGGGAGTGTTTTGGGAATGGGGGTCAGCGAATTAAATATTGACAAAGTGGCCAAAGATGAGGGATCAGATTCATCGAGTGGTGGACCGTTGGTAACGGCCATCAAAACGGAAGAGGTTTTAGTGGAATAGTACCACATTGTCTTGTAATtgttttcttagattttttttccccaaatgtgTCACTTATTTGGGTTATTCTGCTAGATTAAGCTAATGGCGTAGATGGGAAAACGAGTTACATGCATGTTGTAGGAGAATTATTCTACTGAACCAATGGCCTTTCCGGCATTGTGTGCTCTTGAAAAGCAAAAGCAGGGAATTTAAATGTTTGCTACATTACAAAGCTCAAACATACAACAACATGCTTTACTTTTTCtgcctattttttttctcttttctgaaTTAGTATGGCCAATTCAGTTGTTCACATGTTGAAAGCTGTGGTTTAAGCTTTTCCTCTTTACAACTGCCAACAGGAAGGGGAAGTAGTAAATAGTAGTGATCACACTTCTACTAAGAAtgttgctctctttctctcacatttCCATCGCCGGGTAGGTAGATGTGATCAGATTTAGGCCAAGCTGGTGCTCCTAACCCTGTGATTCATGAGTTTTAAAGCAATAGGCTAAATGGGATAACTGTCAGTGtatttttagcatttctgcAGGCCAAATATCTTGTCTTCTGATAAATTCAGTCTCTCTTAGTAAACCCTCCTCACTGTCTCCTGTCTTGGGCAGCTAAGTGTGGTGCTTGTTTGAAGTGTTCTGAGGCAAAAGCATTCTACCAGCACCTTAATATGGGTGAactgatataaaataatttaattttaggcTTTCCtctattactttttaaaaaaacatacacaacacAAATCACACAGCTCCTATCAGCACAAGTTATAGTCACTGATTCTAGCTCAATTCCTCTGGTCTTCAGGTTATTCTTAAAATGAAAAGCACAGAGCATATTGTTTAGCAAACACAACGTTGTCAATATCAAGAACCCCacattaaaaagacattttaaatcatatttttaagaaGTGAAGCTAGTTTAATCAGTCAATTACTTGAACACCAATCTGTTACCTGAATGCCAGTTTATCACGCATCATCATGATCTTTTTCTGTGCCATCTCAGTGTGGATGTCTTTTAACTTGTGTTGGCACCTTAGCCAGACATAATTAGCAGGATGTGTTAATTATCAATAGATATTTCTCTCGATGAAACTGGTGTCTGAAAATGTTTACACATgtgccatcttttttttttcttcttcctctttaaACGTCATTCTCTTTTTGAGCCTGTTACTAAATATAAATGCGTGTTTAAGACATTACGAGAGATCCTACACAAGCAGAAATAGCTCTGCTTGAAGGGAGAATTTATTCTCCTCGTCACGCAGTGTCATTCTTGTTTTGCCAATCCAATTTTTTgcttgaaaaatgtttttaaagcccTTATTTTATGAGTTTGGTATAACTTTTCTAATTTTATACACAGTACTATATTTACaaagaatattttatattgcaAATGTTGTATATTGCAAAATGCATTCAAGCGTAGAATATAATCAATTTTAGCATAGCACAAGTGTATGTACATTTGTTGTCTCTGCGTGAAGACAGTCTTTATATTCATTGTATTTTCTTCTGGTTTTAATTTTGTAGTCTGCTGTCGATTATCGTTTGTTCATTGTTCAGCTAGAGTGCCACTGCTGTTTAAGCACTGAATTCTTTTAGGAACCTGACTACTCTTGACGAAATCCTGACCTTAAAGAAACAAACCAAGAACCAACATGTCAACAATTGTCTGGTTGTAAACAGGCAGTGGACATGCCGGGCAAAAGATTAATCTCCTTTAAATGCCAACAGAACCCAAAAATGAGCAGCTCTTTACATAAGTTATTTACTATAAGTGGCGTTTTTGTTCAAAAGTAAGGGGTTCCTAGTATTGAACTTCTGGTTCAGTAtcgttttattattaaagtattatttCTGCAGCATGTTTTCCATGTCCAGTCAGGGGTGCTCTTTTGACTCTATCAATAGGGCTGTATGTGAATTTGAATTACTACTGAATGATTGGTCAGAGACTGGGATTTGATGCCATGCTTTTCtttgttctcatttttttttgtatttgagaTCCTTGGTGTCTTTTTATTGAGTCCTGTTTGTCCCGCATGTGTAAAATACCATGTCTTGCTTTTCATTGTTACTGTTAAGTATATGTACATATGCAAATTGTTAATCTATTCTGTTCTGAAATGATGTTTTTTGAGGCAGTTCTAGGGGAGGGGGTGAAGAAGAACCTCCCCTCCTCAAACGCACAAACCCCAAAGCGAAGGCAAACAGACAGTATACTGTGATCTCCAGGTCCTCAGGAACGTGAACAATTGctgaaaaaaagactttcattGCATTTTGATTGtgaataatgaacaataaattttttttttcaacaaatcTAGATTAATGTGTGTATTAACTACTGTATTATGCTGCCGGGAATGGATGAACTTTTTAAACAACAATTCAAAAGAGGTGACAAAATTGATTTGAAATGCTACCAGGGTGAATCTAATTCAAAAACTCAGATCCAAATCGGtttgtttgtaatttttgtAGTAGGATGTCTAATTTTAGATATCATTTGTGAAATTTTACTAGTAATTAAGTTACTAGACAAAATTACTATCAATAAAATTGTAATCAGGAA

Function

symbol description
zbtb2b Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Is expressed in several structures, including alar plate midbrain region; immature eye; optic tectum; vasculature; and ventral mesoderm. Orthologous to human ZBTB2 (zinc finger and BTB domain containing 2).
zbtb2 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Involved in negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm.

NR:

description
zinc finger and BTB domain-containing protein 2-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10489 ZBTB2; zinc finger and BTB domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253894.3 True 4504 mRNA 0.44 3 55936150 55948950

Neighbor

gene id symbol gene type direction distance location
LOC103034817 LOC108424415 coding upstream 47474 55666605 ~ 55888676 (+)
nrbp1 nrbp1,LOC107659221,LOC107737320,LOC107665360,LOC103372645 coding upstream 320675 55599802 ~ 55615475 (+)
LOC103046183 NA coding upstream 361306 55565611 ~ 55574844 (+)
LOC103045772 ttbk2b,LOC108424489,LOC108258239,LOC107721367,LOC107556162,LOC107737314 coding upstream 376434 55541034 ~ 55559716 (+)
slc35f6 slc35f6,LOC106571211,LOC107721386 coding upstream 397066 55531687 ~ 55539084 (+)
susd6 susd6 coding downstream 243429 56192379 ~ 56227029 (+)
max max,LOC107668248,LOC107721316,LOC107671780,LOC108269635 coding downstream 312686 56261636 ~ 56274328 (+)
LOC103032052 rgs6,LOC108424512,LOC108257637,LOC107602058,LOC107659172,LOC107721319 coding downstream 537550 56486500 ~ 56635493 (+)
pigh pigh coding downstream 775430 56724380 ~ 56731338 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107659178,LOC107668247 coding downstream 810756 56759706 ~ 56765799 (+)
G28417 NA non-coding upstream 371456 55542249 ~ 55564694 (+)
LOC111189292 NA non-coding upstream 448674 55483506 ~ 55487476 (+)
G28362 NA non-coding upstream 470865 55462075 ~ 55465285 (+)
G28361 NA non-coding upstream 476850 55458993 ~ 55459300 (+)
G28302 NA non-coding upstream 771131 55163794 ~ 55165019 (+)
G28588 NA non-coding downstream 149713 56098663 ~ 56100801 (+)
G28593 NA non-coding downstream 173187 56122137 ~ 56122799 (+)
G28594 NA non-coding downstream 177212 56126162 ~ 56126455 (+)
G28595 NA non-coding downstream 180401 56129351 ~ 56129680 (+)
G28623 NA non-coding downstream 230513 56179463 ~ 56187540 (+)
LOC103023616 LOC108424481,LOC108257757 other upstream 532820 55380604 ~ 55403330 (+)
G28072 NA other upstream 1556844 54378241 ~ 54379306 (+)
trnas-aga_8 NA other upstream 2282420 53653649 ~ 53653730 (+)
trnas-aga_7 NA other upstream 2283212 53652857 ~ 53652938 (+)
trnas-uga_10 NA other upstream 2283561 53652508 ~ 53652589 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other downstream 283789 56232739 ~ 56239729 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other downstream 341797 56290747 ~ 56312111 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other downstream 388206 56337156 ~ 56453934 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other downstream 746894 56695844 ~ 56706092 (+)
G28865 NA other downstream 1452975 57401925 ~ 57402392 (+)

Expression


Co-expression Network