LOC103043741 (LOC108424497)


Basic Information

Item Value
gene id LOC103043741
gene name LOC108424497
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55889634 ~ 55919246 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253897.3
AAGTCATGctgcctgtgagtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtggtgatGTCCAGTGAGCTGGCGCATGCTGAGGCTGCTGGTGGCAGCAGGCAGCGGCGCAGGAGCAACTCGAGACAAGGCagtgagctggagctggagctgaccCCCAAAGTTTCCCCCATGTACCCGGAGGAGGGGGGCATCTCCTCCACTGTCCACTTCCTGGATGGAGCTTATGAGTACCACAACCCAGCCTCCGGCGTCGGATCATCCCCTGTGGGCTTTTACCCACCGCCTCCGGACCCCCAGCTGCCCCTGGCCGAAGAAACTCTTCAGTCTCTGGCCAGTGGGTCGGCCAGTCCACTGGTGTTTGTGTCCTCCAGCCCCCAGCCACCCACCTATCTGACTCACGCTGGGGGTCAGCAACAGGTGCCCTACTACCTGGAGCCTTCGGCCAGCTCTGTCTACAGGTCCAACGTATTAGCCAATCAGCAGGCAGGAGTACGGGAGGATCTGTGCAGTGCCACCGACAGGCAGGACATGTACACTGCAGCAAGAGCCTCAGGAGCGTTTGAGCTGGTGAAGGAGACGCGCTACTGTGCTGTGTGCAGTGACTACGCATCAGGATACCACTACGGTGTGTGGTCCTGTGAGGGCTGCAAGGCCTTCTTCAAGAGGAGCATACAAGGTCACAATGACTATGTGTGTCCAGCAACCAACCAGTGTACCATTGACAGAAACCGCAGGAAGAGCTGCCAGGCCTGCCGTTTACGCAAATGCTATGAAGTGGGAATGATGAAAGGAGGCCTGCGTAAGGAGCGCGGGGGTCGCAGCTTGAGGCGAGAGAGGAGGCGGGGTGGGGTGGAGAAGCGTGAGCGGACTTACAGTGAGATACCCGGACGTCCTGAGCTGAGGTCCTCCGCTCTGCAGGACAGCAGGAGGAGCCGCAGTGCGCTCTGCATGAACCCAGAGCAGGTCTTGCTGCAGCTGCTGGGGGCAGAACCGCCCACGCTCTGCTCCCGCCAGAGACACAGCCGCCCCTACACTGAGGTCACCATGATGACCCTGCTAACCAACATGGCTGACAAGGAGCTCGTCCACATGATCGCCTGGGCCAAGAAAGTGCCTGGCTTCCAGGAGCTCTCTCTGCATGACCAGGTGCAGCTGTTGGAAAGCTCCTGGCTGGAGATTCTGATGATTGGACTCATCTGGAGGTCTCTTCATTCTCCAGGAAAACTCATCTTTGCACAGGACCTCATTCTTGACAGGAATGAAGGCGACTGTGTGGAGGGCATGGCGGAGATATTCGACATGCTTCTGGCTACTGTGGCTCGCTTTCGTGCACTCAAACTCAAGTCAGAGGAGTTTGTCTGTCTCAAAGCCATCATACTGCTCAACTCTGGTGCGTTCTCTTGCTGCTCCACGCCTGGGGAACCGCTGAGGGACAGCTACATGGTGCAGTGCATGCTGGACAACATCACTGACGCACTCATACACTACATCAGCCAATCAGGCATCTCTGTGCAGCTGCAGTGCCGCCGGCAGgcccagctcctgctgctgctctcccACATCAGACACATGAGCAACAAAGGTATGGAGCACTTGTACAGCATGAAGTGCAAGAACAGATTTCCCCTGTATGATCTGCTGCTGGAGATGCTGGACGCGGCTCGCCTCCGATCCCCCAGTAAAGTGACCCGGAACTGGATGCAAAGCGAGAGGGACTCCCCTTCAACCACCTCCACCAgccgcagtagcagcagcagcctctccGCATGCCCAGGGGTCTTACAGCCAAACCCGGCCCATCCTGACCAAAGCCTTGAATGAAGTTCCACATACTCACAAGAACTTACAGTTCAATATATgttcaaaaaatacaaaaaa
>XM_022663135.1
TAAGTCATGctgcctgtgagtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtggtgatGTCCAGTGAGCTGGCGCATGCTGAGGCTGCTGGTGGCAGCAGGCAGCGGCGCAGGAGCAACTCGAGACAAGGCagtgagctggagctggagctgaccCCCAAAGTTTCCCCCATGTACCCGGAGGAGGGGGGCATCTCCTCCACTGTCCACTTCCTGGATGGAGCTTATGAGTACCACAACCCAGCCTCCGGCGTCGGATCATCCCCTGTGGGCTTTTACCCACCGCCTCCGGACCCCCAGCTGCCCCTGGCCGAAGAAACTCTTCAGTCTCTGGCCAGTGGGTCGGCCAGTCCACTGGTGTTTGTGTCCTCCAGCCCCCAGCCACCCACCTATCTGACTCACGCTGGGGGTCAGCAACAGGTGCCCTACTACCTGGAGCCTTCGGCCAGCTCTGTCTACAGGTCCAACGTATTAGCCAATCAGCAGGCAGGAGTACGGGAGGATCTGTGCAGTGCCACCGACAGGCAGGACATGTACACTGCAGCAAGAGCCTCAGGAGCGTTTGAGCTGGTGAAGGAGACGCGCTACTGTGCTGTGTGCAGTGACTACGCATCAGGATACCACTACGGTGTGTGGTCCTGTGAGGGCTGCAAGGCCTTCTTCAAGAGGAGCATACAAGGTCACAATGACTATGTGTGTCCAGCAACCAACCAGTGTACCATTGACAGAAACCGCAGGAAGAGCTGCCAGGCCTGCCGTTTACGCAAATGCTATGAAGTGGGAATGATGAAAGGAGGCCTGCGTAAGGAGCGCGGGGGTCGCAGCTTGAGGCGAGAGAGGAGGCGGGGTGGGGTGGAGAAGCGTGAGCGGACTTACAGTGAGATACCCGGACGTCCTGAGCTGAGGTCCTCCGCTCTGCAGGACAGCAGGAGGAGCCGCAGTGCGCTCTGCATGAACCCAGAGCAGGTCTTGCTGCAGCTGCTGGGGGCAGAACCGCCCACGCTCTGCTCCCGCCAGAGACACAGCCGCCCCTACACTGAGGTCACCATGATGACCCTGCTAACCAACATGGCTGACAAGGAGCTCGTCCACATGATCGCCTGGGCCAAGAAAGTGCCTGGCTTCCAGGAGCTCTCTCTGCATGACCAGGTGCAGCTGTTGGAAAGCTCCTGGCTGGAGATTCTGATGATTGGACTCATCTGGAGGTCTCTTCATTCTCCAGGAAAACTCATCTTTGCACAGGACCTCATTCTTGACAGGAATGAAGGCGACTGTGTGGAGGGCATGGCGGAGATATTCGACATGCTTCTGGCTACTGTGGCTCGCTTTCGTGCACTCAAACTCAAGTCAGAGGAGTTTGTCTGTCTCAAAGCCATCATACTGCTCAACTCTGGTGCGTTCTCTTGCTGCTCCACGCCTGGGGAACCGCTGAGGGACAGCTACATGGTGCAGTGCATGCTGGACAACATCACTGACGCACTCATACACTACATCAGCCAATCAGGCATCTCTGTGCAGCTGCAGTGCCGCCGGCAGgcccagctcctgctgctgctctcccACATCAGACACATGAGGTATGGAGCACTTGTACAGCATGAAGTGCAAGAACAGATTTCCCCTGTATGATCTGCTGCTGGAGATGCTGGACGCGGCTCGCCTCCGATCCCCCAGTAAAGTGACCCGGAACTGGATGCAAAGCGAGAGGGACTCCCCTTCAACCA

Function

NR:

description
PREDICTED: estrogen receptor-like

GO: NA

KEGG:

id description
K08550 ESR1, NR3A1; estrogen receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253897.3 True 1878 mRNA 0.57 8 55889634 55919245
XM_022663135.1 False 1722 mRNA 0.58 8 55889783 55919246

Neighbor

gene id symbol gene type direction distance location
LOC103044058 LOC108424438 coding downstream 230502 55654005 ~ 55659132 (-)
serac1 serac1,LOC107555766 coding downstream 237241 55640884 ~ 55652393 (-)
LOC103045157 LOC103045157,LOC108424494,LOC108258171,LOC105908978 coding downstream 256992 55619546 ~ 55632642 (-)
capn3 LOC108424491,LOC108257553 coding downstream 291553 55575738 ~ 55598081 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763 coding downstream 324887 55561570 ~ 55564747 (-)
armt1 armt1 coding upstream 5264 55924510 ~ 55931186 (-)
LOC103043128 NA coding upstream 30381 55949627 ~ 56043285 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107665399 coding upstream 135959 56055205 ~ 56125560 (-)
gpr176 gpr176 coding upstream 234468 56153714 ~ 56170803 (-)
LOC103032431 LOC108424505 coding upstream 254211 56173457 ~ 56187855 (-)
G28505 NA non-coding downstream 252974 55635525 ~ 55636660 (-)
G28395 NA non-coding downstream 463985 55424296 ~ 55425649 (-)
G28394 parp1,LOC107678834 non-coding downstream 465891 55418687 ~ 55423743 (-)
G28390 LOC108424481,LOC108257757 non-coding downstream 484630 55401736 ~ 55405004 (-)
G28386 NA non-coding downstream 499304 55389865 ~ 55390330 (-)
G28604 NA non-coding upstream 206911 56126157 ~ 56126524 (-)
G28606 NA non-coding upstream 209949 56129195 ~ 56129732 (-)
G28617 NA non-coding upstream 227930 56147176 ~ 56147738 (-)
G28634 NA non-coding upstream 271243 56190489 ~ 56190689 (-)
G28661 NA non-coding upstream 295298 56214544 ~ 56227854 (-)
G28536 NA other downstream 73036 55815872 ~ 55816598 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 248259 55634532 ~ 55641375 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other downstream 282748 55602870 ~ 55606886 (-)
LOC111189318 NA other downstream 387874 55499900 ~ 55501760 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other downstream 444965 55432081 ~ 55444669 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other upstream 721105 56640351 ~ 56694835 (-)
ppp4r4 ppp4r4,LOC107711657 other upstream 1893016 57812262 ~ 57841318 (-)
LOC103041090 LOC103041090,LOC108424449 other upstream 2072395 57991641 ~ 57995476 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other upstream 2239961 58159207 ~ 58174704 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 3013717 58932963 ~ 58934789 (-)

Expression


Co-expression Network