LOC103044058 (LOC108424438)


Basic Information

Item Value
gene id LOC103044058
gene name LOC108424438
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55654005 ~ 55659132 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253898.3
agagagagagagagagagagagcgtgagggAGAGAAGAGTCACATACATGCGGCCAGAgacgcacagagagaaagacagaagctGTCAGAAGAAGGAATAAAGAAGAGGAGTGGAGGCGTGAGGGAGCTAAAGGAGCCGACTTAATGTGTTTATATCACCTCTCcttttgactgtgtgtgtgtgtgtgtgtgtggacggAGTGATGGCCGATAACAGCACTCATCCCATTCTGGAAATACTGCAGTCCTTCGGCCTGAGGGATCTGATCCTGgccttctgtctctccatggTGGTTGGTTTGGTGTTGGGTGCCCTTGTTTATTTGACCCTGACCTGGATGTCTCGTCGACGGGCCTCTGCTACCATCACCCGCCTGCCCTCTTCTCGCTCATTCcgctcctcatcctcctctccaCGCTCCCGCGCCGCCTTCAGTCGCCACAGCAGCGCCTACGACCGCCGCAGCAACAATAGCCTCGCCAGTGCAGCCTTCTCCTTCCACCGACAAGCCTCATGTTCCTCACCCACGGGCGACCAGGCCGACCTGCTGGGCCGCAAGTCCAGTTTCAGAGCATCCACCTTCCACCCGCTGCTGCAGTGCAGTCAGATCGCCCGGGAAGCTGAGGAGGGCAGCCAAGGCAGCCTGCCTCGTACCCCCACCCTCACCAAtaaccccaccaccaccacaggtTCCACCACCACAGTCAGCTCCATGGTCACCCCACCCAGAGCCAGACCAAGACCAGACTCTTTCTGGGGAAACAGTGGCATGAGGGGCATCCAGACTCCCCCACCCGCCTACGAGAGCATCATACGGGCATACCAGGAAACCTGCACTTGAGCCATAATGACAGGAAGTTGGTCAGCGGACAGTGAGAACATAATGGCAAGACATGGTctgaaagaaattaaatatggtGGACATGACAGACTTTTGAATTAACCAGATATTGGAGAGTTTCTCTGAGAGTTTTTCATACCCAAACAGTAAATACCCATGGTTCTCCTCTcagaattaaaaaatgattacatatatatttttcaaacaaTATAACAGGGTTATAAATGAATCAAATCTAAGAAGAGTGCTTGGGATATTTACCCTTCTGCAGAGTTTTCCCATGCCTAGCTATCATATTTTAGGGCTgtgtatatttatgtgtgtgcaaaacaatgaaaaaagagacagaatgagactAACGGCCATGGCACACTGACCCACCGTCCAGTCCAAAAACAAAGTATGAATGGGGAGAAGAGCATTCTGTAAATTgtgacattctagaacagtgtgaatgatgGGAGAGCATTCTACATCATGAAACGTGAATATGGGaagaaattaaaacattgtataATTTCAGTGTGAATACTGAAGGACATTCTAGAACTATATGAATGGGAACATGTTCTACAATAGATTCAGgacattatataatatttttgtgggAATACAGGAATGACATTCTATAAGTATTTAAATAGGGAAAATTCTAAAATTGTCTACACAGATCAAATTATCATATAATAATTAGTGTCCATGTGGAAGAACACTCTAGAACAGTCTGGAGAGATCAGATTATCATATAATAATTAGAGTGTCCATATGGAAGAACATTCAAGAACAGTCTGGAGGGATCAGATCATCATATGACACACCAActgattattttgttatttgttggGAAACACTTGGACACTGTGATGTGGCCTGAAGACTGTTATTATAATCTTCCATCACTGGGTGAAATTTAAACTGGACATAATGTTTTTACAGAGACATTATTCAGAATAATTGTTGCTTCTTTGTCACAAGACTGTAGTCAACATAATGTATGATTGACTTTTAACAAAGATACAAAACTGTATTGTATTACCTTGATGTGTTTTCTGTCTCTCAAAGGAAGagataaattattaaacatcATATCAAGCTGCTACAGTTCATAAAATGTCATGATTAAGTGTGAATTTATGCTGAGCTCCATATATCTTGGAAGTCTGATGCTCACGCTGGGAATGGCATCACACCCAATTCCCTGCAATCCAGTTGGTCAGCTTTGTTTACCAGTGTTATATGGCCAATTCATCCAACACATGTCCAAGATTTTCAGTCTGTTGAATTTGTAATATCCAGACTTCTGGCAGTAACTGactgaaaataaactgaaaccatgtataaaaaaatacaa

Function

NR:

description
PREDICTED: myc target protein 1 homolog

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253898.3 True 2193 mRNA 0.44 2 55654005 55659132

Neighbor

gene id symbol gene type direction distance location
serac1 serac1,LOC107555766 coding downstream 1612 55640884 ~ 55652393 (-)
LOC103045157 LOC103045157,LOC108424494,LOC108258171,LOC105908978 coding downstream 21363 55619546 ~ 55632642 (-)
capn3 LOC108424491,LOC108257553 coding downstream 55924 55575738 ~ 55598081 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763 coding downstream 89258 55561570 ~ 55564747 (-)
LOC103035409 NA coding downstream 125338 55512759 ~ 55528667 (-)
LOC103043741 LOC108424497 coding upstream 230502 55889634 ~ 55919246 (-)
armt1 armt1 coding upstream 265378 55924510 ~ 55931186 (-)
LOC103043128 NA coding upstream 290495 55949627 ~ 56043285 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107665399 coding upstream 396073 56055205 ~ 56125560 (-)
gpr176 gpr176 coding upstream 494582 56153714 ~ 56170803 (-)
G28505 NA non-coding downstream 17345 55635525 ~ 55636660 (-)
G28395 NA non-coding downstream 228356 55424296 ~ 55425649 (-)
G28394 parp1,LOC107678834 non-coding downstream 230262 55418687 ~ 55423743 (-)
G28390 LOC108424481,LOC108257757 non-coding downstream 249001 55401736 ~ 55405004 (-)
G28386 NA non-coding downstream 263675 55389865 ~ 55390330 (-)
G28568 NA non-coding upstream 227191 55886323 ~ 55890103 (-)
G28567 NA non-coding upstream 235377 55894509 ~ 55894839 (-)
G28604 NA non-coding upstream 467025 56126157 ~ 56126524 (-)
G28606 NA non-coding upstream 470063 56129195 ~ 56129732 (-)
G28617 NA non-coding upstream 488044 56147176 ~ 56147738 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 12630 55634532 ~ 55641375 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other downstream 47119 55602870 ~ 55606886 (-)
LOC111189318 NA other downstream 152245 55499900 ~ 55501760 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other downstream 209336 55432081 ~ 55444669 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other downstream 339826 55266091 ~ 55314179 (-)
G28536 NA other upstream 156740 55815872 ~ 55816598 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other upstream 981219 56640351 ~ 56694835 (-)
ppp4r4 ppp4r4,LOC107711657 other upstream 2153130 57812262 ~ 57841318 (-)
LOC103041090 LOC103041090,LOC108424449 other upstream 2332509 57991641 ~ 57995476 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other upstream 2500075 58159207 ~ 58174704 (-)

Expression


Co-expression Network