LOC103034613


Basic Information

Item Value
gene id LOC103034613
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48690124 ~ 48694492 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254901.3
CAGATCAGAAAAAGTTTAGCTGTTCAGTCTGTCTGGATCTACTAAAGGATCCAGTAACTATTCCCTGTGGACACAGTTTCTGTATGGTTTGTATTAATGGCTGCTGGGATCAGGAGGATCAGAGGGGGGTCTACAGCTGCCCCCAGTGCAGAGAGACGTTCACTCCGAGGCCTGTTCTACGCAGAAACAACATGCTGGCTGAAGTGGTGGAGAAACTGAAGAAGACAGAAGTCCGAGCTGCTTCTCCTGCTCACTGTTACGCTGGAGCTGGAGATGTGGAGTGTGATTTCTGTACTGGGAGAAAACTCAAAGCCATCAAGTCCTGTTTGGTGTGTGTAGCGTCTCTCTGTGAAACTCATCTTAAACCTCACCTGGAAATTCCAGCCTTGATGAAGCACAAGCTGGTGAAAGCGTCCACACGACTACAGGAGAAGATCTGCTCTCAGCATGATAAACTGATCGAGATCTACTGTCGCACTGATCAGAAGTTAATCTGTTATCTGTGTACGATGCATGAACACAAAGCTCATGATACAGTTGCAGCTGCAGCAGAAAGAACTGAGAGAGAGagtCAGATAAAGGAGGTAAAATCAAAATCCCAACACAGAATccaggagaaagagaagaaactgCAGGAACTGAAACAGGCTGTAAACACTCTAAAGGTCTCTGCACAGtcagcagtggaggacagtgagaggaTCTTTACTGAGCTGATCCGCTCAATTGAGAAAAAGCGCTCTGAGGTAACAGAGCTGATCAGAGATCAGGAGAAGACTGAACTGAGTGCAGCTGAAGAACTcattgaacagctggagcaggagATCACTGATCTAAAAAGGAGACAacctgagctggagcagctttcACAAATTGAGGATCACATCCACTTCCTCCAGagTTTCcagtctctctttgtctcttttggATCTGAGCATTCACCAAGCCTTACTGTCCGTCAACATCTCTCATTTGAGGAAGTGACCAGATCTATATCTGATCTGAAAAAACAGCTAGTGGAATTGTGTGAAGAGAAGTTCAGCAAATTGTCTTCACAAGCTACAGCTGTTCAAATTTTACCCTCCGAACCAAAAACCAGACAGGACTTTCTGCAATATTTCAGTCTGCTGACTCTGGATCCAAAAACAGCACAACAAAACCTAATTCTGTCTGAGGAGAACAGAGTGGTGAAATATGTTCAGAATGTCCAGTCATATCCCgatcatccagagagatttAACAACTTTTACGAGGTGTTGAGTAAGGAGAGTGTGAGtggacgctgttactgggaggtCGAGTGGAGCAGTAAGAATTGGGTGTTCATATCAGTCTCATATAAAGGAATCAGCAGAAAAGGATTAGGAGATGAGTGTAAGTTTGGAAGTAATGATCAGTCCTGGAGTCTGCAAacatcttctcctctctctttttggCACAACAACACTGAGACTAAGATCTCAGCTCCTCCATCCTCCAGaataggagtgtatgtggatcACAGTGCAGgaactctgtccttctacagcgTCTCTGATACAATGACCCTCctacacacagtccacaccacaTTCACTCAGCCGCTCTACGCTGGATTCTGGCTTGCTGGTACTGAATCAACTGCAACATTATGTAATCCCGATTAATTAATGTAATGCATAGtgttaaaaaaacttaatttaccACTTTGTATAAATTTTGTGTCTAGTTTTCATAGGAAAACGTTTGTGGGAGCCTCCTTCTCAAGAAGTTAGAACCATAGTAATTTATTATAATGAATTGGACACTGATGGTGATTACTGTCATCAGTAATGTTTGCGTTATAAAATGTTGATCTCCAATCGTTTACTTTAAGTTGAGTCTTCCAACACTCTGTCCAATCCCAGCCACATCTCTGTCTCTTCAGAAGATAGAACACCACATGCAGATATCTTAATGAAGCCTGCACTAATCATTTTACCCCAATTCCTAGGATGACTGCCTCAAAGACGAATGCTTTGATTGTCAACCCAAGGACTTAAAACATAAGTcttaaaacagaaatataagATTTTCCACAGCTTTCCACCTCAACATTTCACTGTATGATACTGTATGATGCATTTTgagacactgaaacactgaagaaCTTTGTACGTTGTGGCCATATGGTAGATTTGATGAACCGATATTGTTTGTCTTTCTCATATTACCTTGTTTAACTATTGCTGT

Function

GO: NA

KEGG:

id description
K12023 TRIM47; tripartite motif-containing protein 47

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254901.3 True 2211 mRNA 0.43 6 48690124 48694492

Neighbor

gene id symbol gene type direction distance location
LOC103035149 NA coding upstream 10246 48672087 ~ 48679878 (+)
LOC103035465 NA coding upstream 35447 48649688 ~ 48654677 (+)
LOC111194359 LOC108441310,LOC108412179,LOC108441308 coding upstream 68212 48620730 ~ 48621912 (+)
amd1 amd1 coding upstream 124523 48541535 ~ 48565601 (+)
cep85l cep85l,LOC107727619,LOC107603087,LOC107678822 coding upstream 378584 48232270 ~ 48311540 (+)
LOC103042815 NA coding downstream 5121 48699613 ~ 48707949 (+)
ginm1 ginm1 coding downstream 17081 48711573 ~ 48722910 (+)
casp8ap2 NA coding downstream 189510 48884002 ~ 48895979 (+)
gja10 gja10 coding downstream 202724 48897216 ~ 48900234 (+)
LOC111191919 NA coding downstream 626929 49321421 ~ 49333922 (+)
LOC111188407 NA non-coding upstream 21560 48664655 ~ 48668564 (+)
G27008 NA non-coding upstream 55282 48634444 ~ 48634842 (+)
G26996 NA non-coding upstream 122830 48562604 ~ 48567294 (+)
G26994 NA non-coding upstream 136967 48552849 ~ 48553157 (+)
G26993 NA non-coding upstream 137457 48552233 ~ 48552667 (+)
G27072 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 non-coding downstream 28839 48723331 ~ 48735530 (+)
G27099 NA non-coding downstream 70997 48765489 ~ 48765945 (+)
G27130 NA non-coding downstream 160020 48854512 ~ 48874216 (+)
G27150 NA non-coding downstream 210164 48904656 ~ 48906548 (+)
G27164 NA non-coding downstream 424136 49118628 ~ 49121736 (+)
G26995 NA other upstream 48219 48555797 ~ 48641905 (+)
LOC103035773 NA other upstream 72049 48578803 ~ 48618075 (+)
G26915 NA other upstream 374230 48278267 ~ 48315894 (+)
fau fau,LOC108411505,LOC107704371 other upstream 2140571 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 5195808 43490323 ~ 43494316 (+)
G27075 NA other downstream 46722 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 753353 49447845 ~ 49448221 (+)
moxd1 moxd1,LOC107737327 other downstream 1645072 50339564 ~ 50408570 (+)
nup43 nup43 other downstream 2050391 50744883 ~ 50753961 (+)
lyrm2 lyrm2 other downstream 2075371 50769863 ~ 50772162 (+)

Expression


Co-expression Network