LOC103035149


Basic Information

Item Value
gene id LOC103035149
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48672087 ~ 48679878 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254902.2
TCTTAGCAAAATGGCAGAGGACAGTATTTCAGGATTAGATCAGGAAAAATTCCACTGTCCAGTCTGTCTGGATCTACTGAAGGATCCAGTAACTATTCCCTGTGGACACAGTTTCTGTATGGTGTGTATTAATGGCTGCTGGGATCAGGAGGATCAGAGGGGAATCTACAGCTGCCCCCAGTGCAGTTTTACTCCAAGACCTGTTCTACGCAGAAACAACATGCTGGCTGAAGTGGTGGAGAAACTGAAGAAGACAGAAGTCCGAGCTGCTTCTCCTGCTCACTGTTACGCTGGAGCTGGAGATGTGGAGTGTGCTCAACTACAGGAGAAGATCTGCTCTCAGCATAATGAAGTGATTGAGATCTACTGTCGCACTgacaaaaatgttgtctgttatTTGTGCGCATTGAATCATCACAAAGGTCATGATACAGTTGGAGCTGTAGCAGAAAGAACTGAAAAACAGaataagctaaagcagataaacattaaACTCCAGCAGAAAATccaggagaaagagaagaatcTACAGAAACTGAAACCAACTCTGAACGCTGTCAAGAGTGCAGCTGAAGAACTCCTGGAGCAGCTGCAGCAGGAGATCACTGATCTAAAGAAGAGAAacactgagctggagcagctttcACACACAGAGGACCACATCCACTTCTTCCAGAGTTTCGAGTCTCTCAGTGTCTCTTCTGGATCTGATCAGTCACCCAACATCAGTGTCCGTCATCATGTCTCATTTGATGCAGTGATCAGATCTGTATCTGATCTTAAAaagaaactggagaaagaaaCTCATGAAGAAAAGATCAGCAGAATCTCTCCACATGCTGCAGCAGTTCAGGTTTTTCCCTCAGAACCAAAAACCAGAGAAGACTTTCTGCAATatttctgTCAGCTGACTCTGGATCCAAACACAGCATATGGTGACCTCATCCTGTCTAAGGATTACAGAAAGGTGAAGTACGTTCAGAAGGCCCAGCAGtatcctgatcatccagagagatttgaGAACTTCTTTGAGGTGTTGAGTAAGGAGAGTGTGAGtggacgctgttactgggaggtTGAGTGGAGCAGCAAGAAATGGGTGGCCATATCAGTGTCATATAAAGGGATCAGTAGGAAAGGATCAGGTGATGAGtgtaaatttggacacaatgaTCAGTCCTGGAGTCTGCGgacttcttctcctctctctttctggtaCAACAACATTGAGACTAAGATCTCAGCTCCTCCATCTTCCAGaataggagtgtatgtggatcACAGTGCAGgaactctgtccttctacagcgTCTCTGATACAATGACCCTCctacacacagtccacaccacaTTCACTCAGCCGCTCTACGCTGGATTCTGGCTTTCTGGTACTGAATCCGTGGCAGAGTTATGTAATGGCACTTCAAATATTTCCCATTCATTAGGAGCACCAGATTTAACAAAGGTTTAGCAAAATGGTGCTCCCAATGTCTGAAACACTTTTCATGACAact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254902.2 True 1514 mRNA 0.45 6 48672087 48679878

Neighbor

gene id symbol gene type direction distance location
LOC103035465 NA coding upstream 17410 48649688 ~ 48654677 (+)
LOC111194359 LOC108441310,LOC108412179,LOC108441308 coding upstream 50175 48620730 ~ 48621912 (+)
amd1 amd1 coding upstream 106486 48541535 ~ 48565601 (+)
cep85l cep85l,LOC107727619,LOC107603087,LOC107678822 coding upstream 360547 48232270 ~ 48311540 (+)
mcm9 mcm9,LOC107549683 coding upstream 452743 48200936 ~ 48219344 (+)
LOC103034613 NA coding downstream 10246 48690124 ~ 48694492 (+)
LOC103042815 NA coding downstream 19735 48699613 ~ 48707949 (+)
ginm1 ginm1 coding downstream 31695 48711573 ~ 48722910 (+)
casp8ap2 NA coding downstream 204124 48884002 ~ 48895979 (+)
gja10 gja10 coding downstream 217338 48897216 ~ 48900234 (+)
LOC111188407 NA non-coding upstream 3523 48664655 ~ 48668564 (+)
G27008 NA non-coding upstream 37245 48634444 ~ 48634842 (+)
G26996 NA non-coding upstream 104793 48562604 ~ 48567294 (+)
G26994 NA non-coding upstream 118930 48552849 ~ 48553157 (+)
G26993 NA non-coding upstream 119420 48552233 ~ 48552667 (+)
G27072 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 non-coding downstream 43453 48723331 ~ 48735530 (+)
G27099 NA non-coding downstream 85611 48765489 ~ 48765945 (+)
G27130 NA non-coding downstream 174634 48854512 ~ 48874216 (+)
G27150 NA non-coding downstream 224778 48904656 ~ 48906548 (+)
G27164 NA non-coding downstream 438750 49118628 ~ 49121736 (+)
G26995 NA other upstream 30182 48555797 ~ 48641905 (+)
LOC103035773 NA other upstream 54012 48578803 ~ 48618075 (+)
G26915 NA other upstream 356193 48278267 ~ 48315894 (+)
fau fau,LOC108411505,LOC107704371 other upstream 2122534 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 5177771 43490323 ~ 43494316 (+)
G27075 NA other downstream 61336 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 767967 49447845 ~ 49448221 (+)
moxd1 moxd1,LOC107737327 other downstream 1659686 50339564 ~ 50408570 (+)
nup43 nup43 other downstream 2065005 50744883 ~ 50753961 (+)
lyrm2 lyrm2 other downstream 2089985 50769863 ~ 50772162 (+)

Expression


Co-expression Network