lats1 (lats1,LOC107660506)


Basic Information

Item Value
gene id lats1
gene name lats1,LOC107660506
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 50758025 ~ 50768239 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255206.3
gagagagagagagctgaccTGAGTGATCTCTGTACGGGAGCAGAGTGAAGCGTTCACACATCCGGGCATCTCCGCTCTGACAGACTCGGAGTGCCAAGGCGACCGTGTCAATACAAAGCCGAGTCTTTAGCTGGAGCTAGCGGATctttcacacactttcactGAGTTTTAGCGGAGTTCCTCGGCTCCTCAGACCGACACTGCGCTGTAGATGTTGTCTGGGTTCAGTATGGATATTCTTTAGTCGACGACACTTGGGCATCGCTCTGGTATGCAGGTAAAATCCACTGCTTGCTGTTAACACTTTCACAGTGTCACTGTGCACCGTGCAACATCTCATTCACACTGGGGATTGGTGAGATACATGGTTTTTCATGAAGAGAAGCGAGAAACTCGAAGGATACAGGCAGATGCGGCCGAAGACGTTTCCGGCAAGCAACTACAGTGGCAACAGTCAGCAGATGTTGCAGGAGATACGGGAGAGCCTACGGAACCTCTCCCGCCTGTCTTCTGATGCTGGCAAGGTGGAGACAGGTGGGGGCAAGAGCCTGCCAGAGGACCCGCGCCAGCAGGGCCGCAGTGCCAACCCCAAAAACCCCCACCACAAAGCCCTGCAGGTGATTCGAGAATCATTATTGCCATTTGCCAACGAGCCCACCTGCACCGGTCGTGGATATGAGGTTAACATGCAGATGCTACAGGAGCTGTTGGCGGCAGGCTTTGACGAGgagcTGGTGATCTGTGCTCTGAGGAATACCAACAATCGCAGTGTGGGGGCAGCTAAAGAATACATCAGTAAGATGAGCTACCAGGACCCAGTGAGAGAGCAGATGGCAGCTGTAGCAGCACGTCCAGCTAACGCAGCCATCAAAGCAGCTGGCCCCTCTCACATCCAGCAGCCTGTTCTACGGAGGCCAAGTTGGAAGGGCTCCAAGGAATCTCTGGCTCCACAGTGGCACGGAGCCCTCATGGCTGATGGCATCATGTACCGCTCTAACAGCCCTGGCCCTCAAGCTGACCTCCCCAGATCTTCCACCTACCCCCAGAATCTTGCGTCTGGTGTCAGCAGCCAGCGGGTGAATCCTCCACTTCCACCTCAAGTTCATAGTGTCACTCCTCCCCCTTCTTCCTGGGAATCAAACCCTGCCACCAAGCGCTATTCTGGAAACATGGACTACCTCGGGCCCCGCATTTCGCCTGTTCCTCAGGGGCAATGGCCTGACAACTTTCCAACCCCTGCAGGCCAGGCCCAAAGAGGCATCAGCCCGGTGCCCATAGGCCGCCAGCCCATAATTATGCAGGGCTCTGGTGGAAACAAGTTCAGCTTTCCCCCTGCCTGGCCACAGAATGGCTCAGGACAGGCAGAGTACGGCAGTGGCAGGCAGCCTCCTCCACCGTACCCACTGGGTCAAGCAAGCAGACATAGTCCTACTGCCCAGCAAATGCAGTCTGGTGGTCCCACTCCCTCCCCACCCTACTCCAATGGAGGCAACCTGCCACCATCCATGTTGGTGCCCAATCGTAACAGCCACAATTTGGACATGTATCTTGGAGTACTGCCTCAGCCTAGACCACAGCAGCCTGGCTCTTCCCCTGGAAGCAGCAGTAATCAAGAGGTTCCCTTACCCTCTTGGCCTCATAGCATCCCAGCACGCTCCAACtcattcacaaacacacaatcgGGTGGACGGCCATGTCCACCTGCACCCAACTCACAGCCCTCAGCCACAACTGTCACTGCCATCACACAGGCACCCATTCTGCAACCGGTGAAAAGCATGCGGGTACAAAAACCTGAACTTCACACAGCTGTGGCCCCAACTCACCCACCCtggctccagcagcagcagccaccCCCTCCTCACTCCCCCTATCAGGATGCTTCTGGGGCAGGGCCTACTGTACCTCAGATGCCAGCTGTGTCTGAGGTGCCCAGCTACCAGGGTCCTCCACCTCCTTATCCTAAGCACCTCCAAAAGCAGCAACCACCAGCTCCATGCCCAGCATATGAGCCCAACCCCAATGGCAGGAAGGAAGATAAGGGTGGGGAGGATGACACAGACAATGCCAGCACTTGCTCCAGTGAGCGCGCTGAAAGCTCTGAGGCAGCTGTGGGGACAGAGCGGGAGAAAAAGCTGATCAACACTTCTCCAGTCCCGGTACGGAGAAACAAACGAGATGAGGAACGTCGAGGAGATGGTAGAGTACAGCTCTATTCACCGCAAGCCTTCAAGTTCTACATGGAGCAGCATGTGGAGAACATCTTAAAGAACCACCAGCAAAGGATCCGTCGCAAGAAACAGCTAGAGAGCGAAATGCAACGGGTGGGTCTATCTGAGGATGCTCAGGAGCAGATGCGCATGATGCTCTCTCAGAAGGAGTCAAACTACATCCGGCTCAAACGTGCAAAGATGGAGAAGTCCATGTTTGAGAAGATAAAAACGCTGGGTATTGGAGCGTTTGGTGAGGTCTGCTTGGCACGAAAGGTGGACACTGGTGCGCTCTATGCTATGAAAACCCTTCGTAAAAAGGATGTGCTTCTAAGAAACCAGGTGGCCCACGTCAAGGCCGAGCGAGACATCTTGGCTGAAGCAGATAATGAGTGGGTGGTCAAGCTTTACTATTCGTTTCAGGACAAAGACAATTTGTACTTTGTCATGGACTACATCCCTGGGGGTGACATGATGAGCCTGTTAATCCGCCTGGGCATCTTTGGCGAAGAGCTGGCACAGTTTTACATTGCCGAGCTCACCTGTGCTGTAGAGAGTGTGCACAAGATGGGCTTCATCCACCGTGACATCAAGCCAGACAACATCTTGATCGACCGTGACGGACACATTAAGCTCACTGACTTTGGCCTGTGCACAGGTTTCCGCTGGACTCACGATTCCAAGTACTACCAGAGTGgagaCCATGTAAGACAGGACAGTATGGATTTCAGCAAGGAGTGGGAGGATCCTGCAAACTGTCGCTGCGGTGACCGGCTCAAACCACTGGAACGGCGGGCTGCTAGGCAACACCAGCGCTGTCTGGCCCACTCACTCGTGGGCACACCTAACTACATCGCCCCAGAAGTGCTGCTACGGACAGGCTACACACAGCTGTGTGATTGGTGGAGTGTGGGGGTGATTCTGTACGAGATGCTGGTCGGCCAGCCTCCTTTTCTTGCTACAACTCCTCTGGAAACACAGATGAAGGTGATAAACTGGCAGACAACACTGCACATCCCTCCGCAGGCCAAGCTGAGTCCAGAGGCGTCAGACCTGATCGTGAAGCTATGCCGAGGGCCTGACGACCGGCTGGGAAAGAACGGCGCTGATGAAATCAAAGCCCACCCTTTCTTCAAAAACATTGACTTCTCCATTGACctgcggcagcagcagcacccaGCACCCTATATCCCTAAAATAACACACTGCACAGACACGTCCAACTTCGACCCCGTTGACCCTGACAAACTGTGGAGCGACGACGATGGCAACCACAACGACACGCTGAATGGCTGGTTTAAGAACGGCAAGCACCCTGAACATGCCTTCTACGAGTTCACATTCCGCCGCTTCTTTGACGATAACGGCCACCCATACAGCTGCCCCAAACCCATTGGGTATGACGGCTATGATGAAGAAGGGGAGGAGCCAGATAACCCCACCCAGGGACAGGAGGCAGGACAAGGGCAGGGACGGGACCTGGTCTATGTTTAGTTGGCCATGccttactacaaaaaaaaaaaaagaaagaaaagaggcagacactgcaCATTGTCTACTTGTGggatgaatgagtgtgtgtgggggtgtgtttgcatttgtgtgtgtctaGCCTTCTACTTCTTTGTTGGTAcagtttttacctgtttttacagtttttatctgCCTTTACACTACATAAGGTTGTGTAtaatttattctgtgtttaGATTGCACTCGTCAATGCGGTCTGAGCGAATGAGAATGTACGAACGCTCTGTACTTTTGAACACCCCAGTTTAAgccttaatttatttaaagccGCTGTAAAACGAGGACACTAGTGGCAAAGATTAGTTCTATCATGCCTTCTTCACAAATGACATGTTAATTTATGATTTAAGTAGGGGGTGTCTTTCTCGCTCTGATCTGGCCTTGAGTGGGCTGTGCAGGGATTGGTTTATTTAGTAACTTTCTATTGCTGTGCCTTTCcttttacactctttacacCAAAAAACTCGAGGGGAAATAGCGTTTTTAGCCAGTTGATTGAACTGACAGATAGTTTTGAGAAAGGATATTCATAGAGAACATTTGTGTGAATTGTATTATTAGcattctgtgtattttctaatttatacactcaaatgtatttataaattatgcagtgtacatttttgtacattttattttttttttcttcattgtcAATTCTGTTGGTGTAGGAAATAAACCTAAGGGCAAGCTCCCTtcctcttttgctctctctcttcaccaga
>XM_022662332.1
gagagagagagagctgaccTGAGTGATCTCTGTACGGGAGCAGAGTGAAGCGTTCACACATCCGGGCATCTCCGCTCTGACAGACTCGGAGTGCCAAGGCGACCGTGTCAATACAAAGCCGAGTCTTTAGCTGGAGCTAGCGGATctttcacacactttcactGAGTTTTAGCGGAGTTCCTCGGCTCCTCAGACCGACACTGCGCTGTAGATGTTGTCTGGGTTCAGTATGGATATTCTTTAGTCGACGACACTTGGGCATCGCTCTGGTATGCAGGTAAAATCCACTGCTTGCTGTTAACACTTTCACAGTGTCACTGTGCACCGTGCAACATCTCATTCACACTGGGGATTGGTGAGATACATGGTTTTTCATGAAGAGAAGCGAGAAACTCGAAGGATACAGGCAGATGCGGCCGAAGACGTTTCCGGCAAGCAACTACAGTGGCAACAGTCAGCAGATGTTGCAGGAGATACGGGAGAGCCTACGGAACCTCTCCCGCCTGTCTTCTGATGCTGGCAAGGTGGAGACAGGTGGGGGCAAGAGCCTGCCAGAGGACCCGCGCCAGCAGGGCCGCAGTGCCAACCCCAAAAACCCCCACCACAAAGCCCTGCAGGTGATTCGAGAATCATTATTGCCATTTGCCAACGAGCCCACCTGCACCGGTCGTGGATATGAGGTTAACATGCAGATGCTACAGGAGCTGTTGGCGGCAGGCTTTGACGAGgagcTGGTGATCTGTGCTCTGAGGAATACCAACAATCGCAGTGTGGGGGCAGCTAAAGAATACATCAGTAAGATGAGCTACCAGGACCCAGTGAGAGAGCAGATGGCAGCTGTAGCAGCACGTCCAGCTAACGCAGCCATCAAAGCAGCTGGCCCCTCTCACATCCAGCAGCCTGTTCTACGGAGGCCAAGTTGGAAGGGCTCCAAGGAATCTCTGGCTCCACAGTGGCACGGAGCCCTCATGGCTGATGGCATCATGTACCGCTCTAACAGCCCTGGCCCTCAAGCTGACCTCCCCAGATCTTCCACCTACCCCCAGAATCTTGCGTCTGGTGTCAGCAGCCAGCGGGTGAATCCTCCACTTCCACCTCAAGTTCATAGTGTCACTCCTCCCCCTTCTTCCTGGGAATCAAACCCTGCCACCAAGCGCTATTCTGGAAACATGGACTACCTCGGGCCCCGCATTTCGCCTGTTCCTCAGGGGCAATGGCCTGACAACTTTCCAACCCCTGCAGGCCAGGCCCAAAGAGGCATCAGCCCGGTGCCCATAGGCCGCCAGCCCATAATTATGCAGGGCTCTGGTGGAAACAAGTTCAGCTTTCCCCCTGCCTGGCCACAGAATGGCTCAGGACAGGCAGAGTACGGCAGTGGCAGGCAGCCTCCTCCACCGTACCCACTGGGTCAAGCAAGCAGACATAGTCCTACTGCCCAGCAAATGCAGTCTGGTGGTCCCACTCCCTCCCCACCCTACTCCAATGGAGGCAACCTGCCACCATCCATGTTGGTGCCCAATCGTAACAGCCACAATTTGGACATGTATCTTGGAGTACTGCCTCAGCCTAGACCACAGCAGCCTGGCTCTTCCCCTGGAAGCAGCAGTAATCAAGAGGTTCCCTTACCCTCTTGGCCTCATAGCATCCCAGCACGCTCCAACtcattcacaaacacacaatcgGGTGGACGGCCATGTCCACCTGCACCCAACTCACAGCCCTCAGCCACAACTGTCACTGCCATCACACAGGCACCCATTCTGCAACCGGTGAAAAGCATGCGGGTACAAAAACCTGAACTTCACACAGCTGTGGCCCCAACTCACCCACCCtggctccagcagcagcagccaccCCCTCCTCACTCCCCCTATCAGGATGCTTCTGGGGCAGGGCCTACTGTACCTCAGATGCCAGCTGTGTCTGAGGTGCCCAGCTACCAGGGTCCTCCACCTCCTTATCCTAAGCACCTCCAAAAGCAGCAACCACCAGCTCCATGCCCAGCATATGAGCCCAACCCCAATGGCAGGAAGGAAGATAAGGGTGGGGAGGATGACACAGACAATGCCAGCACTTGCTCCAGTGAGCGCGCTGAAAGCTCTGAGGCAGCTGTGGGGACAGAGCGGGAGAAAAAGCTGATCAACACTTCTCCAGTCCCGGTACGGAGAAACAAACGAGATGAGGAACGTCGAGGAGATGGTAGAGTACAGCTCTATTCACCGCAAGCCTTCAAGTTCTACATGGAGCAGCATGTGGAGAACATCTTAAAGAACCACCAGCAAAGGATCCGTCGCAAGAAACAGCTAGAGAGCGAAATGCAACGGCTGGTTATTGAAGTTGGCAGCCGCGTAGTCTGCACACATTGACAAAGTGGGTCTATCTGAGGATGCTCAGGAGCAGATGCGCATGATGCTCTCTCAGAAGGAGTCAAACTACATCCGGCTCAAACGTGCAAAGATG

Function

symbol description
lats1 Predicted to enable protein serine/threonine kinase activity. Acts upstream of with a negative effect on BMP signaling pathway. Acts upstream of or within convergent extension involved in gastrulation and secondary heart field specification. Is expressed in several structures, including head; heart; liver; pectoral fin; and pleuroperitoneal region. Used to study autosomal dominant polycystic kidney disease. Orthologous to human LATS1 (large tumor suppressor kinase 1).

NR:

description
PREDICTED: serine/threonine-protein kinase LATS1

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08791 LATS1_2, Wts; serine/threonine-protein kinase LATS1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255206.3 True 4468 mRNA 0.52 8 50758025 50768239
XM_022662332.1 False 2460 mRNA 0.55 6 50758025 50764088

Neighbor

gene id symbol gene type direction distance location
lrp11 lrp11 coding upstream 34093 50706249 ~ 50723932 (+)
ctgf ctgf,ctgfa,LOC107683930,LOC107737382,LOC107737295,LOC107593869,LOC107556147 coding upstream 242081 50512953 ~ 50515944 (+)
LOC111191919 NA coding upstream 1424103 49321421 ~ 49333922 (+)
gja10 gja10 coding upstream 1857791 48897216 ~ 48900234 (+)
casp8ap2 NA coding upstream 1862046 48884002 ~ 48895979 (+)
ube2j1 ube2j1 coding downstream 128122 50896361 ~ 50972664 (+)
LOC103030377 LOC108427479,LOC108256881 coding downstream 212276 50980515 ~ 51030792 (+)
gabrr1 LOC108427508,LOC108256869,LOC102218978,LOC103457991,LOC103150855,LOC107392250,LOC108423527 coding downstream 315829 51084068 ~ 51145395 (+)
rngtt rngtt coding downstream 424584 51192823 ~ 51222073 (+)
dnajc13 dnajc13 coding downstream 734981 51503220 ~ 51584097 (+)
G27370 NA non-coding upstream 54904 50702371 ~ 50703121 (+)
G27369 NA non-coding upstream 82529 50674557 ~ 50675496 (+)
G27333 NA non-coding upstream 208043 50546608 ~ 50549982 (+)
G27322 NA non-coding upstream 339245 50362734 ~ 50418780 (+)
G27463 NA non-coding downstream 204698 50972937 ~ 50973244 (+)
G27481 NA non-coding downstream 394386 51162625 ~ 51167564 (+)
G27491 NA non-coding downstream 419624 51187863 ~ 51188330 (+)
G27494 NA non-coding downstream 458853 51227092 ~ 51227330 (+)
G27495 NA non-coding downstream 459183 51227422 ~ 51227631 (+)
nup43 nup43 other upstream 4064 50744883 ~ 50753961 (+)
moxd1 moxd1,LOC107737327 other upstream 349455 50339564 ~ 50408570 (+)
G27238 LOC107747660 other upstream 1309804 49447845 ~ 49448221 (+)
G27075 NA other upstream 2015586 48741214 ~ 48742439 (+)
G26995 NA other upstream 2116120 48555797 ~ 48641905 (+)
lyrm2 lyrm2 other downstream 1624 50769863 ~ 50772162 (+)
G27489 NA other downstream 406249 51174488 ~ 51178374 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other downstream 1315043 52083282 ~ 52090633 (+)
G27683 LOC108412685 other downstream 1545786 52314025 ~ 52314266 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other downstream 1686192 52454431 ~ 52456164 (+)

Expression


Co-expression Network