gabrr1 (LOC108427508,LOC108256869,LOC102218978,LOC103457991,LOC103150855,LOC107392250,LOC108423527)


Basic Information

Item Value
gene id gabrr1
gene name LOC108427508,LOC108256869,LOC102218978,LOC103457991,LOC103150855,LOC107392250,LOC108423527
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 51084068 ~ 51145395 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255209.3
GTCGCTCGCGCTCACTGATGCGCGCGCCAAACACAGCCGAGCTGGAGTCTCCGCGCGCTCTCCCGCTCGCGGCTCGCGCCATGGCAGTAGGCACCTGAACACTGTGAGAGGAGGCGGCGCGCGACTTCAGAGGACTGCAGACACTTTCCCGCGCTTttggagtgtgtgggtgtgcgtgcgtgagggtgtgtgtatgtgtagttgGGGAGCACCATGCACGCGGACGTGCTTGCCCTGCTCCTCGTGTGGCTCCTGTGCGCTTGCGGAGCCTCGTCTCGGTCGAGGGGACGGACGCTGCAGACCTACGGCCAGATCAGGTCCCGAAGAGAAACTACAAGAACAGAGGGAGGAGTTGGAGGGAGGAGCAAGCCTGGAAGCCCCATTCTGAAGAGGAGCCCTGATATCACAAAGAATCCAGTGACCAAATCAGAACAGCTGCTCAGGATAGATGATCACGACTTCACCATGAGGCCTGGCTTTGGAGGTCCAGCTATTCCTGTGGGTGTGGATGTCCAAGTCGAGAGCTTGGACACTATATCAGAAGTGGACATGGACTTCACCATGACCCTGTATCTGAGGCACTACTGGAAGGATGAGCGGCTGTCCTTCCCCAGCACCACCAACCAGAGCATGACCTTCGACAGCCGTCTGGTGAAGAAGATCTGGGTCCCGGACATGTTCTTTGTCCACTCCAAGCGCTCCTTTATCCACGACACCACGACTGACAATGTTATGCTCAGGGTTTATCCTGATGGAAAAGTTCTCTACAGTGTGAGggtcaCTGTTACAGCTATGTGCAACATGGACCTTAGCCACTTTCCTCTTGATACTCAGACATGTTCACTGGAGATTGAAAGCTACGCCTACACTGATGATGACCTGATGCTGTACTGGAAGAAAGGGAATGACTCTCTGAAAACTGACGACAGGATCTCACTCTCCCAGTTCCTCATTCAGGAGTTCCACACCACCACAAAGCTGGCCTTCTACAGCAGCACGGGCTGGTATAACCGTCTGTACATCAACTTCACTCTACGGCGTCACATCTTCTTCTTCCTGCTGCAGACCTACTTCCCTGCCACTCTGATGGTCATGCTGTCCTGGGTGTCCTTCTGGATTGACCGCCGCGCCGTTCCTGCCAGGGTGCCTCTGGGCATCACCACGGTGCTCACCATGTCCACCATCATCACAGGAGTGAACGCCTCCATGCCGCGGGTGTCCTACATCAAAGCCGTGGACATTTACCTGTGGGTCAGCTTTGTCTTCGTCTTCCTCTCTGTTATAGAGTACGCAGCTGTCAACTACCTGTCAACCCTGCAGGAGCGTAAGGAGAGGAAGCtcagagagaggCTGCCATGCACGTGTGGGATGTCTCACCCGGGCCAGATCATGATGAGCAGCAGCTACAGCGAGATGGATGCCATGACCACGGGTCACTACGGCATGCCGGAGATGAATGGGGACAAGCGCGAGCGAATCCTGGTGCAGCTGGCCATGGACAAAGAGCAGAGCAGTCACAGCCAGAGCGGAAACACACGCTCCTACAACAGCATGTGGATCGACACCCACGCCATAGACAAATACTCACGGGTGATCTTCCCTGGAGCCTACACGCTCTTCAACATCATATACTGGTCCATCTACTCCTAACGGCTCTCGCTGGAGCTCCTGCGCAGCACAATAGAGATGTCCTGGAAGCTTTCAGACATTTTAACTGTCTGTAATGGAGGTCACGCTGGAGAGTGCTAGACCATTCTGTTCATTCAGTCCAAGTCAGAGCACAAGTGAAGCAATGAAGCCAGACTCTCACAGCATTACAGAGACTCAGAGACTTTATCCACCTTCTTTTTTACACTGAACAGTTCATAGGAAAAGCAATGATGATACATGTTTGACTTTATTACAATTTCATTGTAAAGTTGTGCATGAGAGAGACGTTCTCATTAGTTAGTCTTTGATTAGACTATATTCACACTACAATGGGAGATCATTTTTTAGGCATTTGCATTGATATTGTAGTGTATGTAGAAGCAGTTGTAtgtctgtatatttat

Function

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit rho-1-like

GO: NA

KEGG:

id description
K05190 GABRR; gamma-aminobutyric acid receptor subunit rho

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255209.3 True 2054 mRNA 0.52 10 51084068 51145395

Neighbor

gene id symbol gene type direction distance location
LOC103030377 LOC108427479,LOC108256881 coding upstream 53276 50980515 ~ 51030792 (+)
ube2j1 ube2j1 coding upstream 111404 50896361 ~ 50972664 (+)
lats1 lats1,LOC107660506 coding upstream 315829 50758025 ~ 50768239 (+)
lrp11 lrp11 coding upstream 360136 50706249 ~ 50723932 (+)
ctgf ctgf,ctgfa,LOC107683930,LOC107737382,LOC107737295,LOC107593869,LOC107556147 coding upstream 568124 50512953 ~ 50515944 (+)
rngtt rngtt coding downstream 47428 51192823 ~ 51222073 (+)
dnajc13 dnajc13 coding downstream 357825 51503220 ~ 51584097 (+)
tmx3 tmx3 coding downstream 440812 51586207 ~ 51695017 (+)
LOC103029411 NA coding downstream 1176597 52321992 ~ 52327802 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 coding downstream 1222488 52367883 ~ 52374147 (+)
G27463 NA non-coding upstream 110824 50972937 ~ 50973244 (+)
G27370 NA non-coding upstream 380947 50702371 ~ 50703121 (+)
G27369 NA non-coding upstream 408572 50674557 ~ 50675496 (+)
G27333 NA non-coding upstream 534086 50546608 ~ 50549982 (+)
G27318 NA non-coding upstream 673784 50409036 ~ 50410284 (+)
G27481 NA non-coding downstream 17230 51162625 ~ 51167564 (+)
G27491 NA non-coding downstream 42468 51187863 ~ 51188330 (+)
G27494 NA non-coding downstream 81697 51227092 ~ 51227330 (+)
G27495 NA non-coding downstream 82027 51227422 ~ 51227631 (+)
G27563 NA non-coding downstream 333931 51479326 ~ 51535896 (+)
lyrm2 lyrm2 other upstream 311906 50769863 ~ 50772162 (+)
nup43 nup43 other upstream 330107 50744883 ~ 50753961 (+)
moxd1 moxd1,LOC107737327 other upstream 675498 50339564 ~ 50408570 (+)
G27238 LOC107747660 other upstream 1635847 49447845 ~ 49448221 (+)
G27075 NA other upstream 2341629 48741214 ~ 48742439 (+)
G27489 NA other downstream 29093 51174488 ~ 51178374 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other downstream 937887 52083282 ~ 52090633 (+)
G27683 LOC108412685 other downstream 1168630 52314025 ~ 52314266 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other downstream 1309036 52454431 ~ 52456164 (+)
LOC111188765 glrx5,LOC106571612 other downstream 1614718 52760113 ~ 52768976 (+)

Expression


Co-expression Network