LOC103025937 (LOC103025937)


Basic Information

Item Value
gene id LOC103025937
gene name LOC103025937
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 67113196 ~ 67116181 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255223.3
catttttttttaagtaacccGCCAAACCTTGTTAAATAAACCTCAAATGTCTCCAGCTAAACTTAAATGTTAATGTGTACTGTTATATGCTAATTGTAACTACATAACATAATTAtcacttttgtgcatttttaaatcAGCTACAACAGAACAGTGTGGTAGTGTAGTTAATGTTAACTAAGAAGTTAATTGAATCTTCCAGTAGTTTTTAGAGACAGGCTTTAAGTTAAAACaatcactgtaaaaaacagaataaacaaaatgttattaactaaaaaagtatttgtgGTTAAgctataatatataaacatgcaGTAGTTTCTTTGCATGACGAAAATCACATGAAATCCAAGCTCACTGGTTCAACTGAGTTGCATGTCTAGACAGGAGAGGAGTGCAAAATGAGGGAGAATGAGAATTAGCTGGTGCAGAACATGCTTTTTCCACAAGGGGATGCCAGTGGTCTACTCTGTGCCTGAAGCTTTACCTCTCCACAAGAAATATTacaaatgggataaaaaatatCGCAGAATCCGTCATACtgtgtcctgtctttaaatctACACCACTGTTTTGTTCCTTTACTGTGCCTTGTGTAAACAACCAGATGTTTGTCTAGagattgtttctttgtttgtgttCATTGTTTCCCTTTGCCTGTTTCTTGCAATTGGCAATGAGTTGATGAATTGCATCAGTTAATTCTTTTGCATACATTCATACCGACTCTTGAGCAAATAGGGCACGTTGCTTCAGAGCAAACATGTCTTGGATGGGTTAATATATCATCTATCAGTAAGATCATGAAAAAGAGCACAGTATGGAAAGCATAAAGCAAATCATGGACAGTTGTCAAATTGGTGGCAGACATTCCTTCTAGTAAATACATTCGTCCACTTTTTGCTGCAGacagagtacacacacacacacagcttgtccagTCCTTGTAAAGACCTATTGCCAAAGGAATAAGACTCAATGGGGCAGATAACCATGAACCAATCAGCACACTTCCTAATGCCAGGTATGGGCTAGAAGTGTATAAAGCCCCCTCCCAGAACTAATCTTTGGAGCAGTGGAACAGTCTTCTCTGGATTGATTGTGTTctatccaacaaaagcaggattaacTCTAACAGTACTCTTGATTTTGGAAGAGACAATGAACGTGCGAGCAGGTGTTGGGCAGAAAAGGGTTCATATCATCATCCTAACTTTTCCCCACCCCCATGGCTTCTCACGTTTCAGCTACCTTGACACTGAATTTTCCAGTTTCACTGCCCTCGCTATTCTCTCCTACCATACCCTAAAATGAAGAAATTAGTTcagcttttctttattttatttctgggGTGTATTATTctgatgttttatattaattctTCATTTAAAGCAAAACATGAACATTCTCAACCACAGCGGGAGACTGTCAACAGCAGCTACTTTGTGTCTGACGAGGAGATGAATGAAGAGGACGAATGGGCTGTGGATACAGAGCTGGAGATCAGGAAATGTGAGAAGAAGATTCACTCAACTCCGATTCCTCTGGAGCTCAAATACAGACAATACGCCAGAAAGAAGCGGATTCATGACCTGTGTGACAACAATGGTACCTTAGGCATCAATGAGAAATGGCACTCAGTGGATGAAGTCCCGAACTCTGAACTCAGCAACCTGCTTGTGGACGACCGGCATGGGATCATCTACTGCTATGTTCCAAAGGTTGCATGTTCCGAATGGAAGAGGATCATGATTGTTCTGAGTGAGAGTCTAAAGGTGGACGGCGTTCCCTACAGACACCCTTCAGACATCCCTGAGGAACAAATTCATGGCAACACCACACAGTATCTAAACCAGTATCCAAGAGAGGTGATGAAACACAAACTGCAGCACTACAAGAAGTTCATGTTTGTCAGAGATCCTTTCGTTAGACTGATTTCAGCCTTCAGAGACAAATTTCTAAAAGAAAACCAGCCATTTTACAAGTACGTTGCTGTCAAGATTTTGAAGAAATTCAGCAAAGTCCATAAACCACCAAAAACAGCGAAGGAGGCATTCACCGCTGGCATTGTGCCATCTTTCTTAAATTTCATCCAGTACATACTGAGCTTACCAGAAGAGAACTACACACTACTGGATGAGCACTGGAGACAAGCTGTTCACCTGTGTCACCCATGCTTGATCGATTATGACTTCATAGGAAAAATGGAGACTGTAGAACAAGATGCTGCTCAGCTTCTACGAATGCTTCAGGTCGACAATATCGTCCAGTTCCCAAAGAGCAGAAGCAACATAACAGATGAAAGCTGGATAAAGATTTGGTTTCCTGATATTCCCACTGATTGGAGGAGGAACCTATACAAAATATATGAGACAGACTACATATTATTTGGATACAGACATCCTGAAGATCTTCTAAATGAATGAAGCACTTAGAAAATTTGTTGTTACTGGTTTAACTCTGGTTTATCTGAGATGATGAAACAATTTGAtttgggtattttttttaaataagatatttacaggtcaaaagtttgcaTGAGTTTCTGAAGGTAAACTTGTAATactttccttgtttatttttgatGTGGATGATTGTAATTGCAGATATTTTTAgcataaatattttagttattactTGCAAGAAGGCAAATGTTTTGCACTACAGGTTTACcgtttctttattatttacctTAAGGAGTATTAACCCTTAAGGCTTTTCAATAACTACTTTGAATTCTTTAGTCACAGCTgcgaaaataaaaaaatgtgtgtatgtagttATGACAAAGAGACGAATCAGGATATCCTAAGGATTTTTGATAAAACATTTTgataaagcatttttaaatcaaattattattataataaaaatcaattattattattaattggtgttattattgttgttggaggtggtggtggtgatggtaaAGCTGGAAGTATTACTACTAAATAAATTCTACAATGAGAAACattgaaaaaca

Function

NR:

description
carbohydrate sulfotransferase 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255223.3 True 2986 mRNA 0.38 1 67113196 67116181

Neighbor

gene id symbol gene type direction distance location
LOC111194387 NA coding upstream 12893 67097963 ~ 67100303 (+)
LOC111191093 LOC103025937 coding upstream 16282 67095898 ~ 67096914 (+)
LOC103023947 impg1,LOC107660503 coding upstream 253301 66801591 ~ 66859895 (+)
htr1b LOC108427470 coding upstream 428874 66681122 ~ 66684322 (+)
LOC103022286 snx14,LOC108427503,LOC108279824 coding upstream 724982 66349351 ~ 66388214 (+)
LOC111194388 NA coding downstream 77047 67193228 ~ 67194052 (+)
LOC111194389 NA coding downstream 79335 67195516 ~ 67196427 (+)
LOC103028999 NA coding downstream 399751 67515932 ~ 67528356 (+)
swt1 NA coding downstream 417634 67533815 ~ 67579081 (+)
LOC103045824 LOC108256302,LOC108439581 coding downstream 762359 67878540 ~ 67929915 (+)
G31278 NA non-coding upstream 9713 67100372 ~ 67103483 (+)
G31234 NA non-coding upstream 153614 66821189 ~ 66959582 (+)
G31244 NA non-coding upstream 195427 66892429 ~ 66917769 (+)
G31192 NA non-coding upstream 530630 66581802 ~ 66582566 (+)
G31181 NA non-coding upstream 659005 66453502 ~ 66454191 (+)
G31370 NA non-coding downstream 234614 67350795 ~ 67354687 (+)
G31410 NA non-coding downstream 366412 67482593 ~ 67517034 (+)
G31406 NA non-coding downstream 373456 67489637 ~ 67579907 (+)
G31479 NA non-coding downstream 537968 67654149 ~ 67654605 (+)
G31512 arpc5,LOC103045524,LOC104921830,LOC108431159,LOC107677751,LOC107722639 non-coding downstream 744452 67860633 ~ 67862273 (+)
G31000 NA other upstream 1275831 65828781 ~ 65837365 (+)
trnad-guc_10 NA other upstream 2013834 65099291 ~ 65099362 (+)
trnad-guc_9 NA other upstream 2014623 65098502 ~ 65098573 (+)
LOC103031672 NA other upstream 2026416 65077780 ~ 65086780 (+)
LOC103033886 LOC108257901,LOC105910874 other upstream 2066218 65022419 ~ 65046978 (+)
G31355 NA other downstream 98124 67214305 ~ 67215186 (+)
LOC103027733 NA other downstream 367154 67483335 ~ 67506898 (+)
G31407 NA other downstream 381022 67497203 ~ 67497697 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other downstream 575260 67691441 ~ 67844634 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other downstream 903859 68020040 ~ 68022940 (+)

Expression


Co-expression Network