vgll2 (vgll2)


Basic Information

Item Value
gene id vgll2
gene name vgll2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54772275 ~ 54781380 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255367.3
CTCAGTCCCGCCGCGCTGTCTTACAGGAGAGGACATAAAACTTGCTCAGAGACTTTTTACCCGCAGCTCGACCCACCGCGCCTTTCTCCTCCAGACACCCAGAACTCCTCCGTCTCCAATGAAGCGCTACCTGGCCCTGCTGAGTGTTCGTGCGTGGTAAATTAGGCTCGTTTTTGTCGCCATGAGCTGCCTGGATGTGATGTATCAAGTGTACGCTCCACCTCAGCCCTACTTCACCGCCACTTACAGCCCCTATCACCACCAGaAACTCGCCTCTTTCTACTCGAAGATGCAGGAAGCGCAGGAAGCGGCGAGCGGGGGGAGCGCCTCGTTCTCCAGTGCGCACGCGCCGCCCGTTAAAGAAGAAGAGCCGCGCGACCCCGCGCCCGAGGCCGAGTACCTGAGCGCGCGCTGCGTGCTTTTTACCTACTTCCGAGGGGACATCAGCTCTGTGGTGGACGAGCACTTCAGCCGCGCGCTCAGCCAGGCCGCGGGACACGCCCACTCCTCCTCCAGCGGCGGCAAACCCGCGCGGGGCTCCAGCTCCTGGAAAGATGGTTCATTCCCAATGAGTCAGCGAAGCTTTCCTCCGTCATTCTGGAACAGCGCATATCAGCCTTCGGTCACAGCTTCTCTAAGCAGTGCTCTGGGTGCATCCCACTCAGAGCTTCCCTTTGGAGCTGACCCCTACTCCCCGACCTCCTTACACAGCCACCTCCACCAGACCACGCCGGAGCCATGGCACCCaacacaccatcaccaccaccaccacccttaCTCGCTCAGCGGAGCCATCAGCTCCCAGAGCTCCGCCTACTCCCGGCCCTCCATGCACGACATGTACGGGACACACTTTGACCCCCGATACGGTTCTCTGCTGGTCCCTTCGGTGCGACCACACAGGCTGCCTGCTTCCACGGTGCCCGCACCCGGACCTTCACCCTGTGACATCAGCAAAACTGAGCCGGTCAGCTCTGCCTGGACTGGAGCCTTTACCGGGACGGGCTCGGACATGGGCCAGGGTCTCAGCCTGAATGTGGAGACAGCTCGGCGCTACACGCTCTGCGGCGGAGGCATCCTGAGCTGAAATCATGCCAAAGTGGATGAACCCCCCCAGGCCCAGGCTCCATGAGAGGCCCATACTGAGACACTAAAAGCTAACAGAGACTCCGGCTGAGAGAtggacaaaaaaacagcattaaacgGCCTTCCCGAAATACACAGCGGTGTGACCACGCGGCAGCTGTTCTCTCGCTGGCTCGCTCGCCGCTTGTTCTTTCTATCTCGCCGGCCTCAAAAGCTCTCAGCCTGTTCCAAAGTGGACACATGGtccaaaagaaaataaaaaagaacaagcaACTTTGGCTTGGGAGGAGGGGGAAGAGACGCGCGAGAGCTTAAAAGTCAGAAGTGACCGGACGCCCTTTACATGGGGACCATGGCCAGTGCCAGAGGAGAGGCTGCTGTGTTATTgtgactttctttttttattagaaattagAGACTCTGATGAGAGAGCAGCATTCCCTGTCATGACAGAAGAGAGCAGGGGCTATTTGAAGCCACTTGACTCTATCTATATTGCTCTCAGCAGCTGTCATCGACAACTGTTTTGGAACTCCGCACGCACACTCACAATGGCAATGTCACTGTGCAGTGTTTCGACCAAGCAGGGGCTCAGGATTTCATAAAAGGAGCATTTTGTCATTTCTGGACCCCCACCCACACAGGGAACAACTGGTTTGGCTTTTTTGATTTAAGGATGAATGACGGGGGTGGGTGAAAGGAAGTGCCTGTGGACGgacagacacagaaacacacacacaccacctctGTTTCAACTATCTGTGTTGCTGTATACActatatgtgtgtgaatgtgactAGTGCAAGGAACTGTGGACACATTGCCATAAAAGTCACATTCTTTTAATGTTGATTCTCTTTGACTGTCGGCCATCGCTGGCTCTGCACGACAGGTCCTAATGGTGTATTGtggatatattaatatattgcatTGTAAAGTATTTCACATTGATAGTGCATTGAGGAGCCTTCAGTGTTATCTGTATTTCCtgtgtaatgttttattcaATGGAACAGTGTAATTAAAACTGCAACTACATTCAAATGTGCTGAAGGCTTTCAGTATTTATCATATGCAGCAGTAAACGCATTTCTTTAACAGGTGAGTAGAGATGTTCATATTGACCTCATCTTATAAGTTATTCTATATAGTGCTACTACTATGACCTGTTGATTGATAAAGTCATTCAATCCAACCTTCAGATCTTTTAAAAGAATATGACACAAAtggaatagttttctttcaGTCTTACCAATATACCATTGAGGACTTTGTGTGTCCATTTTGTTGCATACATTATCAAGCGTAATAAATGCTGCATATATTGCGAATGCTGCTGCTATACTATGGGTATTCAGATAATTTCCAAGGTCAAGACAGCTGGGAGTTGGGAATATAAGCCAATATAAGAACAGTTTAAAGGACAGATGTGTGAAAGCAACAAGAAAaaacttcttaactttcaatgaaagccAGTGACTTGTATTGCATTTCTGTAGGtctattcatcatgaaattctgaCACAATGAAAGAACAATGACCGTGctcatattattaaaaaaatgtgtgatagcaatgata

Function

symbol description
vgll2 Predicted to enable protein C-terminus binding activity and transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II and skeletal muscle tissue development. Predicted to be located in cytoplasm. Predicted to be active in nucleus.

NR:

description
PREDICTED: transcription cofactor vestigial-like protein 2 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255367.3 True 2668 mRNA 0.50 5 54772275 54781380

Neighbor

gene id symbol gene type direction distance location
dcbld1 NA coding downstream 39587 54695183 ~ 54732688 (-)
LOC103032288 LOC108424430 coding downstream 113249 54655404 ~ 54659026 (-)
nus1 nus1,LOC107736830 coding downstream 119811 54642015 ~ 54652464 (-)
tab2 tab2 coding downstream 247970 54468017 ~ 54524305 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding downstream 581954 54163102 ~ 54190321 (-)
rfx6 rfx6,LOC107678847,LOC104962418 coding upstream 34398 54815778 ~ 54826525 (-)
trnal-cag_7 NA coding upstream 62682 54844062 ~ 54844144 (-)
LOC103025507 NA coding upstream 462736 55244116 ~ 55258518 (-)
LOC103024257 efr3b,LOC108424480,LOC107678842,LOC107697142,LOC107549699 coding upstream 533580 55314960 ~ 55367322 (-)
LOC103021751 NA coding upstream 666746 55448126 ~ 55460855 (-)
G28231 gopc non-coding downstream 106305 54663719 ~ 54665970 (-)
G28221 NA non-coding downstream 238443 54529768 ~ 54533832 (-)
G28156 NA non-coding downstream 309315 54462706 ~ 54462960 (-)
G28145 NA non-coding downstream 368458 54401282 ~ 54403817 (-)
G28140 NA non-coding downstream 407242 54335849 ~ 54365033 (-)
G28262 igf2r non-coding upstream 69172 54850552 ~ 54856843 (-)
G28263 igf2r non-coding upstream 76330 54857710 ~ 54859047 (-)
G28265 igf2r non-coding upstream 86067 54867447 ~ 54871308 (-)
G28282 NA non-coding upstream 292621 55074001 ~ 55079665 (-)
G28299 LOC103032688 non-coding upstream 375938 55157318 ~ 55159137 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other downstream 148435 54556888 ~ 54623840 (-)
LOC103040805 NA other downstream 716578 54049795 ~ 54055697 (-)
akap7 NA other downstream 864863 53742880 ~ 53907412 (-)
trnal-cag NA other downstream 1149917 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 1922369 52786472 ~ 52849906 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 484711 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 650701 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 718520 55499900 ~ 55501760 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other upstream 821490 55602870 ~ 55606886 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 853152 55634532 ~ 55641375 (-)

Expression


Co-expression Network