nus1 (nus1,LOC107736830)


Basic Information

Item Value
gene id nus1
gene name nus1,LOC107736830
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54642015 ~ 54652464 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255372.3
CCTCTCGCTGTGGTGCTGTAGGATCTTTGCGTGCCTCGTCCAATCAGAGAGCTCCATGTAACACAGCGGGTTCAAAGTGGAAAGGCTGAGGAATGGCAGCCGGCAGCCTGTGGCGTTGGCGCTTGTCGGAGCGGCGTTTATGAGCGAGCTGTCCGGAAGCCCTTAGCATGCGGGGTCTGCTGAGCTCCTGACAGACGTGCGGTCCTATCAGAGCCCGAATCATGGCGCTGTTGTACGAGTTGGTGTGGCGGCTCCTGCACTGCCTGCTGCAGCTCCAGAGAGCGGCCGCCGCCTGGATCCGAGGCCGCGTCTGGAGGCGAGGCGGGCGGCTGTGCAGGAGAGCCGCGCTGCGGCTGCCCGGAGCTCTGGGCTTCAGCACCCAGAAGAAGACCGCCAAACCCCGCCGGGTCCGCTGGGTAGCGGACGGCAAGGCTCTGGAGAAGCTGCCCCTTCACGTGGGCTTACTGGTGGCCGAGGAGGAGCAGCAGTACACGGACATAGCCAACCTGGTGGTGTGGTGCATGGCGGTGGGCATCTCATATGTCAGCGTGTATGATAATGAAGgTGTCTTCAGGAGGAATAACTCCAGGCTAATGGAGGAGATTATGAAGCAGCAACAGGAGCTCCTGGGCTCAGAAAGCTGCAAGTACTCACTGGAATTCCTAAACAATGGAACAGATCCACACGcgcTGTTGTGTCAGACGGTGGTGAAGGTGTTGTCTCCAGATGATGGGAAGCTCCGTATTGTACAGGCAGCACAGCAGCTGTGTAAGGCTgtggagaagaaagagaggacaTCCAAAGACATCGACGTCACTGTGCTGGACTCTTTACTGCGAGAGTCGAAGAACATCCCAGACCCAGACCTGGTGCTGAAGTTTGGTCCAGTGGATAGTACGCTTGGTTTTCTGCCTTGGCACATTAGATTAACAGAGTTCATCTCTTTGCCTTCCCACAAAGACGTCTCTTACGAGGACTTCCTCAGTGCCCTGCGGCGCTACGCATCCTGCGAGCAGAGAGTGGGGAAGTGAGCCAACCTTCACAGTGGAGAACAGAAGCAAAGGAACACggcagagaggagaagagaagaggaggagtggGTGACCCCTCTCTCTTTCGGTTTACAGTACAAGCAGCAGAGCAGCAACAGCATCCAGACTGTACATCTttccacacatatacacacacacacacacacacacacacacacatacatggcTCGCTCCAACATCTGTGACATTTATGGCTCTGTGTGATTCTGTGAGAATGTGactttgggtgtgtgtgtgtgtgtgtgtgtgtgtgggcagtaCCTGCgggtgtgtgagagctgtgcaTGTGTGTCTTTGTACAGTAGTTGTGTTcgtttgtgtgcgtgtgagagCCTCTTCTGCTGCTGggtgtatttattatacatcCTGCCAAGGTGACTGAGCATGGAGCTCCATCCACTGACCTAAACAAGGTCCAGCACTTCACTGCACTGCATGGTCCAGACTCGGAGCGGCTCCTGTAGCCCCAGGACTGTGGTCAGTGCGGTTTAAGGACCTAGTGTAAATCTACTGTCTGCACTGTCCTCTGCTGTAGGCCTGAAGCAGTGTGACTACTTGAAGCACTGTAGTCTGGGACACGCTGAACTTCACGATGGATTTACAGCCATCCATCTCACCCGGCATGTCTCTCCTACGTCTGGAGGACTCATTAAGGACTTCCGTAATGAAGCTAATGCATTTCCAATAGTCGTGCTTCAAGCTAgacagctgctttaaaaaaaaaaaaaaaaagaaaagaaaaaatacgtGTGCAGATTGGATCCCACATGTGTGGCCTCTGCATGGGAACATGTGAACAGTTTTCAATTGCGCTGGGTATGATTGAGTATgttggttttgtgtgtgtgttcaatcTGCAAAtgattgtacaaaaaaaaacatgaccatATTCTACAAATTCTCTGGATTGTCATCAAAGTTCTGTATGTTCATAattatttgctatttttttaaattgatcaatttggtttttttttaactacagttTTTTCCTCTATTTATTGCTCCGTCCAGTAGTGCAGtcctcacttaaaaaaaaagtgttcagttgctttgctttttttttttttttttttttgaggacgTTGTCTTGCACAGATACGCAGAAGATTTGTGGTGAGAAACACTACAGACTTTTAAAGCGTACTGCTAACCACAGGGGCTTGATGAAGCCGAGCCTGTTCTAATGTCACTAGTCTTAACACGAGCAGTCTGTCAGTATGTGTGTTCACCACATAGGAGGGTTGGTAAagtagtgttcagtgtgattgCCCAATAAATGTTACTGAAACCTGAAACAGAAA

Function

symbol description
nus1 Predicted to enable transferase activity, transferring alkyl or aryl (other than methyl) groups. Predicted to contribute to dehydrodolichyl diphosphate synthase activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of dehydrodolichyl diphosphate synthase complex. Predicted to be active in endoplasmic reticulum membrane. Is expressed in blastomere; brain; notochord; and trunk. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 55 and congenital disorder of glycosylation Iaa. Orthologous to human NUS1 (NUS1 dehydrodolichyl diphosphate synthase subunit).

NR:

description
dehydrodolichyl diphosphate synthase complex subunit NUS1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0044425 obsolete membrane part cellular_component

KEGG:

id description
K19177 NUS1; dehydrodolichyl diphosphate syntase complex subunit NUS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255372.3 True 2356 mRNA 0.50 5 54642015 54652464

Neighbor

gene id symbol gene type direction distance location
tab2 tab2 coding downstream 117710 54468017 ~ 54524305 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding downstream 451694 54163102 ~ 54190321 (-)
med23 med23 coding downstream 926107 53689367 ~ 53715908 (-)
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding downstream 1231946 53333965 ~ 53410069 (-)
glrx5 glrx5,LOC106571612 coding downstream 1876171 52760053 ~ 52765844 (-)
LOC103032288 LOC108424430 coding upstream 2940 54655404 ~ 54659026 (-)
dcbld1 NA coding upstream 42719 54695183 ~ 54732688 (-)
vgll2 vgll2 coding upstream 119811 54772275 ~ 54781380 (-)
rfx6 rfx6,LOC107678847,LOC104962418 coding upstream 163314 54815778 ~ 54826525 (-)
trnal-cag_7 NA coding upstream 191598 54844062 ~ 54844144 (-)
G28221 NA non-coding downstream 108183 54529768 ~ 54533832 (-)
G28156 NA non-coding downstream 179055 54462706 ~ 54462960 (-)
G28145 NA non-coding downstream 238198 54401282 ~ 54403817 (-)
G28140 NA non-coding downstream 276982 54335849 ~ 54365033 (-)
LOC103031114 NA non-coding downstream 376387 54258911 ~ 54265628 (-)
G28231 gopc non-coding upstream 11255 54663719 ~ 54665970 (-)
G28262 igf2r non-coding upstream 198088 54850552 ~ 54856843 (-)
G28263 igf2r non-coding upstream 205246 54857710 ~ 54859047 (-)
G28265 igf2r non-coding upstream 214983 54867447 ~ 54871308 (-)
G28282 NA non-coding upstream 421537 55074001 ~ 55079665 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other downstream 18175 54556888 ~ 54623840 (-)
LOC103040805 NA other downstream 586318 54049795 ~ 54055697 (-)
akap7 NA other downstream 734603 53742880 ~ 53907412 (-)
trnal-cag NA other downstream 1019657 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 1792109 52786472 ~ 52849906 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 613627 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 779617 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 847436 55499900 ~ 55501760 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other upstream 950406 55602870 ~ 55606886 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 982068 55634532 ~ 55641375 (-)

Expression


Co-expression Network