cep85l (cep85l,LOC107727619,LOC107603087,LOC107678822)


Basic Information

Item Value
gene id cep85l
gene name cep85l,LOC107727619,LOC107603087,LOC107678822
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48232270 ~ 48311540 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255377.3
agagagagagagagtgtatctgtgtgtgtgtgagtgagagagtgtgtgagaccACGTCCTTGCAATGCGGTCGCTGGAGAGATTCAGTCGGCTGTAGTTCAATAGATTTCCGACACACGAGTGATTCACAGCTCGgggtctctctgtgtgtgaaaCAGGAACCCGTTCTCTcgctatttattgttttttatggttTGTAGCTGTAATAGCTGTATGTGTGCAGTGTCTTACCGACAGTATGGATTTTAGCCTGACTTAGCTCGAGTGCTCCTCAGACCCGTCTGACTGGGTTCAGGGATTTTGGGGacttctcgctctctctctgcactGAGGAAAACAGCTCGCCTGttcagagacacagagagaaggGAAAAAAGCTCATGAAATCGAGCGAGATGTGGGGCAGGAGCGAGTTTGAGGACGGACTGGACGCTTTTAAATCAGGTTCGAGCACATCCTCTCCTGGATGGGTCCCAGGCTGTGATTCAGCCTGGCAGGGCTCTTCCTCCACCACTACCAGCAGTAATCGTGGAAGACGTCACAGTGCCGCTTCGGACAGTGGTGACACGGGCATAGGCACATCCTGCTCTGACAGCGTGGAGGATCACTCTAGCTCGAGTGGGACGCTGTCCTTTCAACCGCTCCGCTCTCAGGGCCCCATCCCCACGGCCCACGTCATGCCCTCCCCCTCCGCCTCCCGGCTCAGCACCCCTTCAGCCCCCAGCAGCCCCTGGAGCAGCTGCCAGCTTCCCTCGCCCCTCGACAGCCCACTGGACATGAAGGACCCCCGACCTGTCCGTCGCTGGTCTTCTCTCACCCGACTGAGTGGTCAGGAAAAAAGCAGTCCGTCCGGCAGAGCCTCCTACCGTGCTGACCCTCACGGCTCCTTGGACCGGGGCCTGCTCTACGGGTACCGGCAACAGGAACCCCTGAGCACAGACGCTCTACTAACCCATGGCCTGCATAAACTGTCCTCCACCAATCCAGAGCTACCACGCTACAGGTATGAGCTGGGCAGCAGCACCACTTTTGCCAGGACGGACTCGTCCTGCTCCTCTCCACTCAAGCCTAGCACGTTGGACCTGAGCTACAGTGCCTTACCAGAGAGCAAACCTACCACTTCAGGCTCCCTTTTGCTTCCCAGTCCGAGAGGCTCCTCACTGGGGCACCAGTCGGTAGGCGGTTCACCCATCCAGCCAGCTGTGCGCACACAGATGTGGCTGAGTGAGCAAATGGAGTACAGGCCAGGACCTGAGGGCTGTGGACTCAATGCCTGGcaacaggagcagcagcagcagcagcagcgtgacAGACTGAGGCAGGAGGCTGAGCTCACACAGATGCTGGGTGGTACGGGTCTCCCTGTGAACACTCTGGTCAAGATAAAGGAGGGGCtactgagacagagagaactGGAGATTGACAGGCAAAAGCAGCAAATTCTGCAGCTTCATGCCAGAATCAGGGAAAATGAGTTAAGGGCACAGCAGTTTCTCCAGAACCAGAGGGGGCGCTGTGAAGATCCTTATCTGCTTAAAACAAAGGAGTGCCAGTACGACGGGCCTGTATCTGGTCACAGTCCGCAGCCTCCGCTGACCGAGCGGAACACTCTGTGCTGTGAGAACGGTGAACTGGGCCGCAAACTGGCCACTGCTGAGTTGGAAGTCATCCATCTAAACGAGTTCCTCAAACAGAACACACAGAAGTACACAGAGGACATAAAGAAACTAGAGGAGAAGATGAAGACGCGTGACCGCTACATCAGCAGTCTGAAGAAGAAATGCCAGAGAGAGCAGGAGCAGAACCAGGAGAAGCAGCAGCGCATCGAGACTCTGGAGAAATACCTGGCTGACTTGCCCTCGCTGGACGAGGTGCAGACACAGGCCCAGCAgttgGAGGAGGTGCAGGGTAAGGAAAAGGCACTGCTGGACACAGTGGCTCAGCTGGAGCGGAGCTTAGAGGAGAGCCGATCCACGCTGCAGGAGAAAGACGTGCTCATTGAGAGCCAGTGCAAGAGAGAAAAGGAACTGGTGGCTGCTGTTCAAAGTTTGCAAGAAAAGGTAGAGAAGTGTCTGGAGGACGGAGTGCGGTTGCCAATGCTGGACCTCAAGCAGCTGGAGAGGGAGAACACACGTCTGCTAGAACAGCAGAGTCAAAATAGCAAGCTGATCGACAGCCAGAAGCAGCAGATTGATAAGCTCACTCTGGAATTGACGgcacTGGAGAAGAGGCTGCAGAAGGAGAAGGGGATCACGCAGGAACTCCACTTGCAGCtgtctgagagagaggaggaccTGGAGTTGCTCTCCAAAAGCAAACACCAGAACCAAAGACAGGTGGATGATGGAGCGCTGCGGCCGTCACCGGGCCCCACGGTGCAGGAGGCGGGGCCTCTGCTGAAGGAGATGTCTCTGTGTCTGCTGGATTTAAAGGCTCTCTGCAGCATCCTCACGCAGAGAGCCCAGGGCAAAGAGCCCAACTTGGCACTGCTGCTGGGCATCAAATcTATGAGCTGCTCAGGTGAAGAAGGCGAGAAGCCGCCGGTGGAGGACAGCTTGCGGGCCAAGCTGCTGGAAGTGTGCCAGCTAAGGAAGGACATTGACGATCTGCGAACCATCATTTCCGACCGCTACGCACAGGACATGGGGGAGAACTGCGTGACGCAGTGAAGCACCCCCTACAGTCCAGCCTGCTTTCCCAGGCCTCCCGTTCCCAACCACTGAGGACTAGAAGACAACAAAgggaaaaatattaataataataataataataataataataataataataataaaagagaatcaGAGGTCTCTGACTACTGAATGTTGGACCAAGCTGTGAATCTAGTTTACGTGGGAGTCTTTGTAGCTTTGTGTTTAAACGCTCATCTCCACTTCAGATTGTTGAAGATGGTCGTATATGAACTCTTTGAAAGTTTTTGATGTATATTTATTGGGATCATGGATCACCTTCTTAGGTATTACAGTCAGTGGACTTTGAGGATTCTGTCCAGATGTTCAGAAACAATGCACAGCAATGCAGTAGGAACCACAGAAATATATGTTCTCTAATGAGCCCTCCTTCAGCTGTTACTGTAAGGTGTTAGTGGAACGGTTAATGCAGCTATTTAAGTGCCTTGTCATAAGATGTTAATGATCCAGTTTGTTTCTTCTGTTGTATCACAAACCCTGTCCAACGGTGACCAAAAGACAAGGTCCATGTTCTTCATCAACTGCTGGTTGCAGGTCAACACTACGGCAGATTCACTTCCCACATGTTTAACCGTCTTCCACTCAGCACCTTGTATTCTGACTGTGATGttgctctgtgtctctctctgtgtgttacTTCTAAACTGTTCTTCTAGTAGGACTTTAGGACTACAGTACTAATAGCAGCAATCCAGGCTCCTGAAAAGTTCCACAACCAGGAAGGAGGGTGCAGTTGGTTGGGTGGTTGGATGGTTGTTTGGTTGCGGGAAATTCACAAAAAGGGCCAACCAGATTTAGGAGCAGGTTTGTTGATTCAGATTAAAAACTGTACTAGATTTCAGGTAAATCGCGTCAGGAATTGTTTTTTAGTTCtagtgacaaaaaaaatttaatcaggaaatactaCTCAGCAGTTCCTGAGCTAGTGATGAGCTCAATTACTGTTCTGGTCCTGAGGATGTTTTTCCTCATGAAGCTCCAAAGACGAGGAGGAGAAACACAGatgtccagttttttttttcccctccctcacAGAACGGGAAAAACGCACAAAGGAGTTTTATAAACACCATAAGATAAGAATACATAGGATTTACTATAAAATAACCtagtaaaaaaactaaaaaccatCAATGCAAAAATGATTCTCAGGTATTTTCTATAGACAGTGTTAAGACTCCACAGTTAAAAGTGGAATTGcattgcttttattattttaaaaagggaTTTTAACTCTCTGAGTTGTCTGGTCTTAAGAGTTGGATCTTTTCATGTTGGCCCCATATAAAATTCTTTTTGTCTGTAATATAAGAAAAGTTCAGCGACTTGGTCATGACAATCTATGCACAGGCATTTGCAAGACGataaatgtttgtaaaatatttattgaaacaatgtATTCAGCTGATGTATCTCTAGATAGCAATATAACtgttatattcagtatatttttgCATGGGACTTAAACTAGGATATTTGTCAGTGTGTGCTAGGATTGTCCATCACGTGCATGTCTGTGTTCTACCGCTCTTCTTAAACACTGTCCTGATGGATGGAACCTGTACAGAATGGATGAGATCACTGAAGCTGGttttgatacacacacacagtgctatGCAACCTCGTATTTACCAGCATTCAGTACTATAGAGTTAAGCAGACATCGTTTTTACTGTGCCTTTATAAATCTATGCAGCAAAGTCAGAATCCtgtgtttttaaagtatatGTATGTCAGCAAGACTTCCATGGTTGGCATGACTTTGATAATGAAAAGGCAGAAGCCGTGTTGGAACCTGCTGAAAGGACGAAACCTCCACACATTCTGATGAAAGGCATGCAGTCGTGTTAAGCCATAGCCACAAACAATGCATATTTCTACTCAGGCAAAGTGAGGCTGAAACCTGACGAGGAATGTTCTTGCTGCAGCTCCTGGTTTATACTTTACCAGGCGCTATTAAAGTGAACAGGCGTGCGGAGTGGTGTACAGAGATGGAGTGATTGTATTGCAGACGTGAGCAAAGGGAAGTGCACGGTTGTCATGGCCGACTCTGAACTCACTGTGGGCTGAAGGCCACTGGCTGGCTTTACTGAACGGTATAGACCTTCTCACTGGGTTAAACTtagtttaagcttttattttttcagctaGACTTTACATATGCCAAAGCTCTATTTATGTACCAACttcaaaattaaagtatttttccattttgtacaaaattaaaatgaaaaaaaaaaaaaaaagtttgctcTTCATTTGTACAgagaatgaataaaat
>XM_007255378.3
CACTTCCTCCCGCTGCTTCTGCATTATGCGCCTTTCTGATGAAGAAGCACAATTGTTCGAGCACATCCTCTCCTGGATGGGTCCCAGGCTGTGATTCAGCCTGGCAGGGCTCTTCCTCCACCACTACCAGCAGTAATCGTGGAAGACGTCACAGTGCCGCTTCGGACAGTGGTGACACGGGCATAGGCACATCCTGCTCTGACAGCGTGGAGGATCACTCTAGCTCGAGTGGGACGCTGTCCTTTCAACCGCTCCGCTCTCAGGGCCCCATCCCCACGGCCCACGTCATGCCCTCCCCCTCCGCCTCCCGGCTCAGCACCCCTTCAGCCCCCAGCAGCCCCTGGAGCAGCTGCCAGCTTCCCTCGCCCCTCGACAGCCCACTGGACATGAAGGACCCCCGACCTGTCCGTCGCTGGTCTTCTCTCACCCGACTGAGTGGTCAGGAAAAAAGCAGTCCGTCCGGCAGAGCCTCCTACCGTGCTGACCCTCACGGCTCCTTGGACCGGGGCCTGCTCTACGGGTACCGGCAACAGGAACCCCTGAGCACAGACGCTCTACTAACCCATGGCCTGCATAAACTGTCCTCCACCAATCCAGAGCTACCACGCTACAGGTATGAGCTGGGCAGCAGCACCACTTTTGCCAGGACGGACTCGTCCTGCTCCTCTCCACTCAAGCCTAGCACGTTGGACCTGAGCTACAGTGCCTTACCAGAGAGCAAACCTACCACTTCAGGCTCCCTTTTGCTTCCCAGTCCGAGAGGCTCCTCACTGGGGCACCAGTCGGTAGGCGGTTCACCCATCCAGCCAGCTGTGCGCACACAGATGTGGCTGAGTGAGCAAATGGAGTACAGGCCAGGACCTGAGGGCTGTGGACTCAATGCCTGGcaacaggagcagcagcagcagcagcagcgtgacAGACTGAGGCAGGAGGCTGAGCTCACACAGATGCTGGGTGGTACGGGTCTCCCTGTGAACACTCTGGTCAAGATAAAGGAGGGGCtactgagacagagagaactGGAGATTGACAGGCAAAAGCAGCAAATTCTGCAGCTTCATGCCAGAATCAGGGAAAATGAGTTAAGGGCACAGCAGTTTCTCCAGAACCAGAGGGGGCGCTGTGAAGATCCTTATCTGCTTAAAACAAAGGAGTGCCAGTACGACGGGCCTGTATCTGGTCACAGTCCGCAGCCTCCGCTGACCGAGCGGAACACTCTGTGCTGTGAGAACGGTGAACTGGGCCGCAAACTGGCCACTGCTGAGTTGGAAGTCATCCATCTAAACGAGTTCCTCAAACAGAACACACAGAAGTACACAGAGGACATAAAGAAACTAGAGGAGAAGATGAAGACGCGTGACCGCTACATCAGCAGTCTGAAGAAGAAATGCCAGAGAGAGCAGGAGCAGAACCAGGAGAAGCAGCAGCGCATCGAGACTCTGGAGAAATACCTGGCTGACTTGCCCTCGCTGGACGAGGTGCAGACACAGGCCCAGCAgttgGAGGAGGTGCAGGGTAAGGAAAAGGCACTGCTGGACACAGTGGCTCAGCTGGAGCGGAGCTTAGAGGAGAGCCGATCCACGCTGCAGGAGAAAGACGTGCTCATTGAGAGCCAGTGCAAGAGAGAAAAGGAACTGGTGGCTGCTGTTCAAAGTTTGCAAGAAAAGGTAGAGAAGTGTCTGGAGGACGGAGTGCGGTTGCCAATGCTGGACCTCAAGCAGCTGGAGAGGGAGAACACACGTCTGCTAGAACAGCAGAGTCAAAATAGCAAGCTGATCGACAGCCAGAAGCAGCAGATTGATAAGCTCACTCTGGAATTGACGgcacTGGAGAAGAGGCTGCAGAAGGAGAAGGGGATCACGCAGGAACTCCACTTGCAGCtgtctgagagagaggaggaccTGGAGTTGCTCTCCAAAAGCAAACACCAGAACCAAAGACAGGTGGATGATGGAGCGCTGCGGCCGTCACCGGGCCCCACGGTGCAGGAGGCGGGGCCTCTGCTGAAGGAGATGTCTCTGTGTCTGCTGGATTTAAAGGCTCTCTGCAGCATCCTCACGCAGAGAGCCCAGGGCAAAGAGCCCAACTTGGCACTGCTGCTGGGCATCAAATcTATGAGCTGCTCAGGTGAAGAAGGCGAGAAGCCGCCGGTGGAGGACAGCTTGCGGGCCAAGCTGCTGGAAGTGTGCCAGCTAAGGAAGGACATTGACGATCTGCGAACCATCATTTCCGACCGCTACGCACAGGACATGGGGGAGAACTGCGTGACGCAGTGAAGCACCCCCTACAGTCCAGCCTGCTTTCCCAGGCCTCCCGTTCCCAACCACTGAGGACTAGAAGACAACAAAgggaaaaatattaataataataataataataataataataataataataataaaagagaatcaGAGGTCTCTGACTACTGAATGTTGGACCAAGCTGTGAATCTAGTTTACGTGGGAGTCTTTGTAGCTTTGTGTTTAAACGCTCATCTCCACTTCAGATTGTTGAAGATGGTCGTATATGAACTCTTTGAAAGTTTTTGATGTATATTTATTGGGATCATGGATCACCTTCTTAGGTATTACAGTCAGTGGACTTTGAGGATTCTGTCCAGATGTTCAGAAACAATGCACAGCAATGCAGTAGGAACCACAGAAATATATGTTCTCTAATGAGCCCTCCTTCAGCTGTTACTGTAAGGTGTTAGTGGAACGGTTAATGCAGCTATTTAAGTGCCTTGTCATAAGATGTTAATGATCCAGTTTGTTTCTTCTGTTGTATCACAAACCCTGTCCAACGGTGACCAAAAGACAAGGTCCATGTTCTTCATCAACTGCTGGTTGCAGGTCAACACTACGGCAGATTCACTTCCCACATGTTTAACCGTCTTCCACTCAGCACCTTGTATTCTGACTGTGATGttgctctgtgtctctctctgtgtgttacTTCTAAACTGTTCTTCTAGTAGGACTTTAGGACTACAGTACTAATAGCAGCAATCCAGGCTCCTGAAAAGTTCCACAACCAGGAAGGAGGGTGCAGTTGGTTGGGTGGTTGGATGGTTGTTTGGTTGCGGGAAATTCACAAAAAGGGCCAACCAGATTTAGGAGCAGGTTTGTTGATTCAGATTAAAAACTGTACTAGATTTCAGGTAAATCGCGTCAGGAATTGTTTTTTAGTTCtagtgacaaaaaaaatttaatcaggaaatactaCTCAGCAGTTCCTGAGCTAGTGATGAGCTCAATTACTGTTCTGGTCCTGAGGATGTTTTTCCTCATGAAGCTCCAAAGACGAGGAGGAGAAACACAGatgtccagttttttttttcccctccctcacAGAACGGGAAAAACGCACAAAGGAGTTTTATAAACACCATAAGATAAGAATACATAGGATTTACTATAAAATAACCtagtaaaaaaactaaaaaccatCAATGCAAAAATGATTCTCAGGTATTTTCTATAGACAGTGTTAAGACTCCACAGTTAAAAGTGGAATTGcattgcttttattattttaaaaagggaTTTTAACTCTCTGAGTTGTCTGGTCTTAAGAGTTGGATCTTTTCATGTTGGCCCCATATAAAATTCTTTTTGTCTGTAATATAAGAAAAGTTCAGCGACTTGGTCATGACAATCTATGCACAGGCATTTGCAAGACGataaatgtttgtaaaatatttattgaaacaatgtATTCAGCTGATGTATCTCTAGATAGCAATATAACtgttatattcagtatatttttgCATGGGACTTAAACTAGGATATTTGTCAGTGTGTGCTAGGATTGTCCATCACGTGCATGTCTGTGTTCTACCGCTCTTCTTAAACACTGTCCTGATGGATGGAACCTGTACAGAATGGATGAGATCACTGAAGCTGGttttgatacacacacacagtgctatGCAACCTCGTATTTACCAGCATTCAGTACTATAGAGTTAAGCAGACATCGTTTTTACTGTGCCTTTATAAATCTATGCAGCAAAGTCAGAATCCtgtgtttttaaagtatatGTATGTCAGCAAGACTTCCATGGTTGGCATGACTTTGATAATGAAAAGGCAGAAGCCGTGTTGGAACCTGCTGAAAGGACGAAACCTCCACACATTCTGATGAAAGGCATGCAGTCGTGTTAAGCCATAGCCACAAACAATGCATATTTCTACTCAGGCAAAGTGAGGCTGAAACCTGACGAGGAATGTTCTTGCTGCAGCTCCTGGTTTATACTTTACCAGGCGCTATTAAAGTGAACAGGCGTGCGGAGTGGTGTACAGAGATGGAGTGATTGTATTGCAGACGTGAGCAAAGGGAAGTGCACGGTTGTCATGGCCGACTCTGAACTCACTGTGGGCTGAAGGCCACTGGCTGGCTTTACTGAACGGTATAGACCTTCTCACTGGGTTAAACTtagtttaagcttttattttttcagctaGACTTTACATATGCCAAAGCTCTATTTATGTACCAACttcaaaattaaagtatttttccattttgtacaaaattaaaatgaaaaaaaaaaaaaaaagtttgctcTTCATTTGTACAgagaatgaataaaat

Function

symbol description
cep85l Predicted to be active in centrosome. Human ortholog(s) of this gene implicated in lissencephaly 10. Orthologous to human CEP85L (centrosomal protein 85 like).

NR:

description
centrosomal protein of 85 kDa-like

GO: NA

KEGG:

id description
K16766 CEP85; centrosomal protein CEP85

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255377.3 True 4992 mRNA 0.48 14 48240716 48311540
XM_007255378.3 False 4602 mRNA 0.48 14 48232270 48311540

Neighbor

gene id symbol gene type direction distance location
mcm9 mcm9,LOC107549683 coding upstream 12926 48200936 ~ 48219344 (+)
fam184a fam184a,LOC107678849,LOC107697135,LOC106607780 coding upstream 35731 47940437 ~ 48196539 (+)
LOC103032605 NA coding upstream 305868 47918346 ~ 47926402 (+)
man1a1 man1a1,LOC107727625 coding upstream 641854 47393247 ~ 47590416 (+)
tbc1d32 tbc1d32,LOC107602184,LOC107675228,LOC107727650 coding upstream 1032062 47139549 ~ 47200208 (+)
amd1 amd1 coding downstream 229995 48541535 ~ 48565601 (+)
LOC111194359 LOC108441310,LOC108412179,LOC108441308 coding downstream 309190 48620730 ~ 48621912 (+)
LOC103035465 NA coding downstream 338148 48649688 ~ 48654677 (+)
LOC103035149 NA coding downstream 360547 48672087 ~ 48679878 (+)
LOC103034613 NA coding downstream 378584 48690124 ~ 48694492 (+)
G26910 NA non-coding upstream 19288 48212137 ~ 48212982 (+)
G26890 NA non-coding upstream 300319 47908691 ~ 47931951 (+)
G26872 NA non-coding upstream 479404 47752634 ~ 47752866 (+)
G26867 NA non-coding upstream 534690 47697342 ~ 47697580 (+)
G26864 NA non-coding upstream 550029 47681924 ~ 47682241 (+)
G26982 NA non-coding downstream 107292 48418832 ~ 48450456 (+)
G26993 NA non-coding downstream 240693 48552233 ~ 48552667 (+)
G26994 NA non-coding downstream 241309 48552849 ~ 48553157 (+)
G26996 NA non-coding downstream 251064 48562604 ~ 48567294 (+)
G27008 NA non-coding downstream 322904 48634444 ~ 48634842 (+)
fau fau,LOC108411505,LOC107704371 other upstream 1682717 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 4737954 43490323 ~ 43494316 (+)
G25880 NA other upstream 4807364 43424392 ~ 43424906 (+)
G25879 NA other upstream 4810224 43421771 ~ 43422046 (+)
rps29 NA other upstream 4868826 43360469 ~ 43363444 (+)
G26995 NA other downstream 244257 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 267263 48578803 ~ 48618075 (+)
G27075 NA other downstream 429674 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 1136305 49447845 ~ 49448221 (+)
moxd1 moxd1,LOC107737327 other downstream 2028024 50339564 ~ 50408570 (+)

Expression


Co-expression Network