LOC103043748 (LOC108424468)


Basic Information

Item Value
gene id LOC103043748
gene name LOC108424468
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47126477 ~ 47128782 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255386.3
GCTGATCTTCCGGCAACGTGACAGTTTGCCACTTTGAAAAATTTATTACACAACCTCTGGAAGGGAAAAACTCAAGGTTCAACAGCAGTTAGATATCACTTAGTTTCTGGAGCGGTTTTCATAAGGAAGAAGGGATCATTTGCAAAGtaacCCTGAGCTCCAAGGAGAATGGGAGATTGGGGGTTTCTCTCGAGTCTACTGGACAAGGTGCAGTCCCACTCCACTGTGATTGGGAAGATATGGATGAGCGTCCTCTTCATCTTCAGGATCCTGGTCCTGGGGGCGGGAGCGGAGAGCGTCTGGGGCGATGAACAATCTAGTTTAGTGTGCAACACCATGCAGCCCGGCTGTGAGAATGTGTGCTACGACTGGAAGTTCCCCATCAGCCACATCCGCTTCTGGGTGATGCAGATCATCTTTGTCTCCACTCCAACCCTGATCTACTTGGGCCATGCTTTTCTTGTCATCCACAAAGAGAACAAgctgagagagaaaataaaacggCAGCGTGACAACAAAATGCTGAAAATGCCCAAATACACTGATGACAAGGGTCATGTCACGATCAAGGGGAATCTTCTAGGAAGCTACCTAACCCAGCTTTTCTTTAAGGTAATCTTAGAGCTGGCTTTCATTGTCGGGCAGTATTATCTGTATGGCTTCATTATGATCCCTGAATTTGCCTGCTCTAAAAAGCCGTGCCCGTACACAGTGGAGTGCTTCATGTCCCGTCCCACAGAGAAgaccatcttcatcatcttcatGCTGGTGGTGGCCTGTGTGTCTCTACTGCTGACTGTGATCGAGATCTTCTACCTGATCTGCACCCGGGTTAGATGTCGGCCCACAAAGCAAAGGATGTACAACAGAACGTCGGCTGAGCACCCGGCCGGCTTGTCTTCTTCGTGGCAGCCCGCGCTGGGGGTCGAGGACCCTTTGAAGCAAAACAAGCTTAACATGCAGTTAGAGAGTGGACACAGTATCGCTGTCAGTCTGGACGAGGCACATGAGGACAAAGAGATGTTAAAGGACCATTAGATTTAATGTTGCAAAAAAATTATGTTGTTTCTTCTCAAagaaacattgttgttttgaatGTGTTGTTCATAAACTCTAGGGTCCAAAGGTCTGAGTCTGCTGCCAGGAACTGCTTTTATTTCATCATTTATCGAAAAAACTAATTCAACTTTTGTCCATACTTGATTTATTCTTGTTTGATTTCCAAAAATGTTAGAGAAGAGAGAACTGTTGGGATTCTTCCACACTACACTAAATTGATGTCTTATGTATGTTTAAagagacatttatttatttttttattttgtttgtttgtttgtctgtttaagaAATGTTGTACCAATAGGAAAGTTGAATTCATTTTTACGTTTTTTATAactgataaaataaaa

Function

NR:

description
PREDICTED: gap junction Cx32.2 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255386.3 True 1409 mRNA 0.44 2 47126477 47128782

Neighbor

gene id symbol gene type direction distance location
LOC103044766 LOC103044766,LOC108424467,LOC108257939 coding downstream 2007 47122168 ~ 47124470 (-)
LOC103044065 LOC108424424 coding downstream 24846 47096096 ~ 47101631 (-)
LOC103045279 cx43,LOC107675226,LOC107602186,LOC107716890,LOC107598086 coding downstream 31573 47089549 ~ 47094904 (-)
LOC103022574 mdga2,LOC108411484,LOC108257548,LOC107704381 coding downstream 189884 46645637 ~ 46936593 (-)
LOC103047706 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding downstream 611664 46512639 ~ 46514813 (-)
LOC103033231 LOC103033231,LOC108424426,LOC108257936 coding upstream 288 47129070 ~ 47134301 (-)
hsdl1 NA coding upstream 5953 47134735 ~ 47139318 (-)
slc35f1 slc35f1,LOC107697151,LOC107743307,LOC107727669,LOC107678858 coding upstream 1197103 48325885 ~ 48446366 (-)
cdk19 cdk19 coding upstream 1316595 48445377 ~ 48539382 (-)
ppil4 ppil4 coding upstream 1433722 48562504 ~ 48576593 (-)
G26783 LOC108424466 non-coding downstream 6471 47117582 ~ 47120006 (-)
G26771 NA non-coding downstream 20153 47105315 ~ 47106324 (-)
G26751 NA non-coding downstream 462514 46662119 ~ 46663963 (-)
LOC111197648 NA non-coding downstream 527046 46578287 ~ 46599431 (-)
G26666 NA non-coding downstream 717413 46395961 ~ 46409064 (-)
G26810 NA non-coding upstream 70082 47198864 ~ 47199418 (-)
G26826 NA non-coding upstream 209639 47338421 ~ 47347966 (-)
G26828 NA non-coding upstream 221831 47350613 ~ 47350891 (-)
LOC111188267 NA non-coding upstream 252060 47380842 ~ 47384068 (-)
G26846 man1a1,LOC107727625 non-coding upstream 306663 47435445 ~ 47569287 (-)
G26754 NA other downstream 387741 46704347 ~ 46738736 (-)
fkbp3 fkbp3 other downstream 590642 46533695 ~ 46535835 (-)
G26695 prpf39,LOC107729032 other downstream 600481 46518871 ~ 46525996 (-)
naa30 naa30,LOC108270341 other downstream 690552 46427417 ~ 46435925 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other downstream 833671 46292087 ~ 46292806 (-)
LOC103039734 LOC108424428 other upstream 1088724 48217506 ~ 48324662 (-)
pln NA other upstream 1149480 48278262 ~ 48288736 (-)
G27145 NA other upstream 1758212 48886994 ~ 48891028 (-)
G27258 NA other upstream 2509977 49638759 ~ 49639444 (-)
G27400 NA other upstream 3353107 50481889 ~ 50531639 (-)

Expression


Co-expression Network