LOC103044065 (LOC108424424)


Basic Information

Item Value
gene id LOC103044065
gene name LOC108424424
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47096096 ~ 47101631 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255387.3
TGAGCTCAGTCTTCAGTAACTTCCGTTCTTTTGATCAGGCGAGATCCCAGACCACGTTGGGAATTCAGCAAActgttattaattttatttaaaattcaggATTTACTGTTCAACCCACTGTTTCAGAATAACCCTGAGCACCAAAGAGAATGGGAGATTGGGGGTTTCTCGCGAGTTTACTGGACAAGGTGCAGTCCCACTCCACTGTGATTGGGAAGATATGGATGAGCGTCCTCTTCATCTTCAGGATCCTGGTCCTGGGAGCAGGAGTGGAGAACGTCTGGGGGGATGAACGATCAGACATGACCTGTAACACCAACACGCCCGGTTGTGAGAGCGTGTGCTACGACTGGAAGTTCCCCATCTCCCACGTGCGCTTCTGGGTCTTGCAGATCCTCTTTGTGTCCACTCCAACTCTACTGTACCTGGGCCATGCTATCCATGTCATCCACCAGGAGAACAAGCTCAGGGAGATGCAGAAGTCCAATCAGATAGTGAAATCTCCGAAATACACAGACGAGAACGGCAAAGTGCGAATCAAGGGGAGGCTGTTGGGGAGCTACCTGACTCAGCTGTTTTTCAAAATCATCCTGGAGCTGGCTTTCATCGTTGGGCAGTATTATCTATATGGTTTTGTGATGTTTCCCAGATTTCTCTGCAAACAATCGCCCTGTCCTTTGGAGACAGAGTGTTTCATGTCCAGGCCCACAGAGAAGACCATCTTCATTATCTTCATGCTGGTGGTAGCATGTGTGTCTCTGGCCTTAAACGTGCTGGAAGTGTGCTATCTGTGTTGCAGGAGGATGTGCAGACGACCTAAATCTAGAAGTATGGTGCACTACAACCCACAACCCCATTACATGCATCCTCCCTCATTTTCAATAGGCCTAGAAGCTGTGGAAAGTCTGAAGCAGAACCGTGTGAACACCAGCATGGAGAGCAAATGGGCCCAGAGGAGCAGCAGCCCTGCTGCTCATGAAGAAAAGGCTGAACTGTAGAATCGTGACATATGAGAGCAGTGTTTCTCTatcctggtcctggaggcaCCCTGCCGTGCACATTTTAGAGGTTTTCCTCTGAAAAGGCTGAAATGTAATTAATCTGTTGAATCAAGTGTGCTGGAAGCAGAAAAAAGGCAATAAATGCAGGAAGAAGAAGGGATGCAGGGTTCCTCCAGGACCATGATAAAGAAACACTACTCCACAGCCACACATCTGAAATGCATTACTAAAGTCTTACACTAGAGGTCGTAGTGCACCTGTTGAGTGAGATGAACTCCTTGGTGTTACAGTGTTACAATGTCTGAAAATCTGTTTTGACCAAAGTGTTGTATTCAAAAGCCTCAGACATATATTTCTAGTACTATTACTCTGCAATACACTTACTTTacttgtgttttatatatttacatatgttGCAAATGTGTTGAATGCCCAAATATTTGAGGATATTAACTCTAACCATGTGTAAATGTCTGTTCTGACCGAATTGTTGTTTTCAGAAGCCTCAAAATTCATATCTCTTCTGCAATGAACATACTTtttttactactactatcattttttttatatttgaattatattttctgtgtttcaatcaataaatataaataaaaaata

Function

NR:

description
PREDICTED: gap junction Cx32.2 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255387.3 True 1619 mRNA 0.44 2 47096096 47101631

Neighbor

gene id symbol gene type direction distance location
LOC103045279 cx43,LOC107675226,LOC107602186,LOC107716890,LOC107598086 coding downstream 1192 47089549 ~ 47094904 (-)
LOC103022574 mdga2,LOC108411484,LOC108257548,LOC107704381 coding downstream 159503 46645637 ~ 46936593 (-)
LOC103047706 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding downstream 581283 46512639 ~ 46514813 (-)
peli2 peli2,LOC103047193,LOC108410474,LOC108258111,LOC100334245,LOC107567396,LOC107574485,LOC106571579 coding downstream 596429 46480645 ~ 46499667 (-)
actr10 actr10,LOC106608088,LOC106571574 coding downstream 679675 46410456 ~ 46416421 (-)
LOC103044766 LOC103044766,LOC108424467,LOC108257939 coding upstream 20537 47122168 ~ 47124470 (-)
LOC103043748 LOC108424468 coding upstream 24846 47126477 ~ 47128782 (-)
LOC103033231 LOC103033231,LOC108424426,LOC108257936 coding upstream 27439 47129070 ~ 47134301 (-)
hsdl1 NA coding upstream 33104 47134735 ~ 47139318 (-)
slc35f1 slc35f1,LOC107697151,LOC107743307,LOC107727669,LOC107678858 coding upstream 1224254 48325885 ~ 48446366 (-)
G26751 NA non-coding downstream 432133 46662119 ~ 46663963 (-)
LOC111197648 NA non-coding downstream 496665 46578287 ~ 46599431 (-)
G26666 NA non-coding downstream 687032 46395961 ~ 46409064 (-)
G26663 NA non-coding downstream 734178 46361718 ~ 46361918 (-)
G26605 NA non-coding downstream 933997 46076136 ~ 46162099 (-)
G26771 NA non-coding upstream 3684 47105315 ~ 47106324 (-)
G26783 LOC108424466 non-coding upstream 15951 47117582 ~ 47120006 (-)
G26810 NA non-coding upstream 97233 47198864 ~ 47199418 (-)
G26826 NA non-coding upstream 236790 47338421 ~ 47347966 (-)
G26828 NA non-coding upstream 248982 47350613 ~ 47350891 (-)
G26754 NA other downstream 357360 46704347 ~ 46738736 (-)
fkbp3 fkbp3 other downstream 560261 46533695 ~ 46535835 (-)
G26695 prpf39,LOC107729032 other downstream 570100 46518871 ~ 46525996 (-)
naa30 naa30,LOC108270341 other downstream 660171 46427417 ~ 46435925 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other downstream 803290 46292087 ~ 46292806 (-)
LOC103039734 LOC108424428 other upstream 1115875 48217506 ~ 48324662 (-)
pln NA other upstream 1176631 48278262 ~ 48288736 (-)
G27145 NA other upstream 1785363 48886994 ~ 48891028 (-)
G27258 NA other upstream 2537128 49638759 ~ 49639444 (-)
G27400 NA other upstream 3380258 50481889 ~ 50531639 (-)

Expression


Co-expression Network