LOC103044458 (LOC108424466)


Basic Information

Item Value
gene id LOC103044458
gene name LOC108424466
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47115452 ~ 47119014 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255388.3
TGATCTCTGGTTGTGttgcaaaataatgattttctgTGCTAAGAGGCTGGGTGGAGACTGTaggataaaattataaaattggtCATCCCCGTGGATGATTCAATGCAGTTAGTTTCAGACGATATCTCCAGTTTCAACACTTCAACTTGTCGCTGGATTCACTTCGACCgctaaaacattaaacacagcagTTAGCTGAGTATAAACCATGGGAGAATGGGGCTTTCTCTCCAACTTACTGGACAAAGTTCAGTCCCACTCCACCAGCATTGGGAAAGTGTGGATGACTGTGCTTCTAATCTTCAGGATCATGGTTCTAGGAGCTGGAGTAGATAAAGTGTGGGGGGATGAACAGTCTGGCATGGTGTGCAACATCAATACACCTGGATGCAAGAATGTGTGTTACGACCAAGCCTTTCCAATTTCCCACACTCGTTTCTGGGTTCTTCAGGTCCTTTTCGTCTCCTTGCCCACTCTGGTGTACCTCGGCTACGTCCTAAACGTCAtccacaaagaaaacaaaatgagACAAAAGCTCCAAAACCATGCTGAAAAGCAAGGGCTGAAGCTCCCCAAATACACAGATGACAATGGGAAGCTTCGCTATAAAGGAAACCTTTTGTGCGTCTACATAATGTGCATTATCATGACCATTTTATTTGAAGCAGCTTTCATTGTGGCCCAGTACTATCTGTATGGTTTCACAATGGAAGCAAAGATTTCATGCTATGGACCGCCATGCCCTGGACATACTGTAGAGTGCTTCATGTCTCGTCCCACAGAAAAGACCATCTTCATCATTTTCATGCTGGTGGTGGCCTGTGTGTCTCTAGCATTGAATGTAGGGGAGATATTTTATCTGATTGGTCGGGCTACTGTGTTCAGATCCCACAAATATCCACCAATCATTCGAGCTGATGAACAGAAACCCTTCACCACTGAGACATTTTGCTGAGATCAGTCTAAAACCATTTTGAGGTCAGTTTAGTGTAAATAAATCTTGAGCAGAAAAGCCAAATTAACATAAGTTACAATGCTTAAGGCTAGTTCTGCGCTTTTATTAGAACATgataaaataaatctttttttcccTATGTTTAAGGTTAATCTGGGCCTGGGAAACAGGTTCTTGCTGTTAAGCCTGGTCTCAAGAGGAATATGTACATTTGTGACCTAAAGACCATTTCAGGATTCAGTGTGCACGAAATGTATTTGGGCCTAACACAACCTAGACAGGGCAAAACATTAACAATTTGAGCGGAGAATGTTACAAACAActagtttaatttttattcacCAGAGCCTTCactttaacctaaacttaatgtACACCTCACCCTTAACCTAAAATTATCTGAtcccttaatctacacctaaactaAACCTACTCCTAAACTTAATGTACACCACAACCTTAACATAAAATTATCTGAtcccttaatctacacctaaactaAACCTACTCCTAAACTTAATGTACACCACAACCTTAACA

Function

NR:

description
PREDICTED: gap junction Cx32.2 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255388.3 True 1495 mRNA 0.41 2 47115452 47119014

Neighbor

gene id symbol gene type direction distance location
prpf39 prpf39 coding upstream 589626 46519113 ~ 46525826 (+)
otx2 LOC108410484 coding upstream 654638 46456013 ~ 46460814 (+)
c3h14orf37 LOC107659812,LOC107574488,LOC107704373,LOC107713862 coding upstream 685403 46420148 ~ 46430049 (+)
entpd5 LOC103043327 coding upstream 763252 46341857 ~ 46352200 (+)
LOC103029419 LOC108411685,LOC108258103,LOC101066055 coding upstream 815328 46292008 ~ 46300124 (+)
tbc1d32 tbc1d32,LOC107602184,LOC107675228,LOC107727650 coding downstream 20535 47139549 ~ 47200208 (+)
man1a1 man1a1,LOC107727625 coding downstream 274233 47393247 ~ 47590416 (+)
LOC103032605 NA coding downstream 799332 47918346 ~ 47926402 (+)
fam184a fam184a,LOC107678849,LOC107697135,LOC106607780 coding downstream 821423 47940437 ~ 48196539 (+)
mcm9 mcm9,LOC107549683 coding downstream 1081922 48200936 ~ 48219344 (+)
G26770 NA non-coding upstream 9130 47105420 ~ 47106322 (+)
G26766 cx43,LOC107675226,LOC107602186,LOC107716890,LOC107598086 non-coding upstream 20539 47089537 ~ 47094913 (+)
G26762 NA non-coding upstream 102754 47012364 ~ 47012698 (+)
G26725 NA non-coding upstream 345785 46748490 ~ 46769667 (+)
G26717 NA non-coding upstream 452021 46662137 ~ 46663431 (+)
G26827 NA non-coding downstream 231614 47350628 ~ 47350899 (+)
G26857 NA non-coding downstream 548399 47667413 ~ 47670470 (+)
G26860 NA non-coding downstream 552962 47671976 ~ 47672187 (+)
G26861 NA non-coding downstream 559988 47679002 ~ 47681080 (+)
G26862 NA non-coding downstream 562179 47681193 ~ 47681712 (+)
fau fau,LOC108411505,LOC107704371 other upstream 565899 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 3621136 43490323 ~ 43494316 (+)
G25880 NA other upstream 3690546 43424392 ~ 43424906 (+)
G25879 NA other upstream 3693406 43421771 ~ 43422046 (+)
rps29 NA other upstream 3752008 43360469 ~ 43363444 (+)
G26915 NA other downstream 1159253 48278267 ~ 48315894 (+)
G26995 NA other downstream 1436783 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 1459789 48578803 ~ 48618075 (+)
G27075 NA other downstream 1622200 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 2328831 49447845 ~ 49448221 (+)

Expression


Co-expression Network