LOC103044766 (LOC103044766,LOC108424467,LOC108257939)


Basic Information

Item Value
gene id LOC103044766
gene name LOC103044766,LOC108424467,LOC108257939
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47122168 ~ 47124470 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255389.3
ATTTGTGGTAAGGAGCAACGCGACGGGCCAGTTGCGCAACTCTGCGGAAGCTAAAGTTCAAGGCAGGCACCCAGTCCATGGCACTTTATCATTAGTTTCCAATCCTTTAGCCTTCCGGCCGTGGCACTTTAAAGGTTGTTCAGTACTGAACTGGACCTTGGACTGTTCTTCTTTTGACAGCGCTTTTGAAGTATAATCACCAGAGGCCCCTTACagATAAGGCATTACACACGCAAACATGGGAGAATGGGGCTTTCTCTCCAAGTTGCTGGACAAGGTGCAGTCCCACTCCACTGTCATTGGGAAGGTATGGATGACGGTCCTTTTTGTCTTCAGAATCATGGTTCTTGGAGCTGGTGCTGAAAAGGTGTGGGGAGATGAACAGTCCAAAATGGTCTGTAACACCAAACAACCAGGTTGTACAAATGTCTGCTACGATAAAGCTTTTCCCATCTCCCACATTCGCTTCTGGACCCTCCAGATCATCTTTGTGGCCACACCGACGCTCATGTATCTAGGCCATGTTCTACACGTCGTCCACAAGGAAAAGAAGCTGAGGCAGCATCTTCACAGCCAAGCGGAACGTCAGGGAGTCAAAGTACCAAAATACACTGACGAAAAGGGTAAAATCGATATTAAAGGAGGCTTGTTGGCCAGCTACATGACCAGTGTGATCGTGAAGATCCTGCTTGAGGCAGGTTTCATAGCCGGACAGTACTACCTGTACGGTTTCGTGATGGTGCCCAAAATCGAATGTACCCGGTACCCATGTCCCTACACTGTAGAATGCTTCATGTCTCGGCCTACGGAGAAGACCGTCTTCATCATCTTCATGTTGATCGTGTCATGTGTTTCCCTGCTCCTGAACCTAATAGAAATTTTCTACCTGATTGGCTACAGGTCAAAGAAGCATCAGGCTAAGATGAGTGCGCGATTAAAGCAAGCACACTTGTATCTTCCTGTAAACCAAGAAAGTAGCAGCAGCAAAGCCTGAAAGAACAAAATCAGAGCCAAAACCGGCCTAAACGAATGATCTAAACAGTGTGTATTATTAGAAATGAATGCTTTAGCATTTTTTAAGCTAGTCTCTAACTGTGATACATCTGCAGCATAAATACACTTACAATAGAAGCTAATGGGCAGGTGCTAAAGCAAAGTATCAACAGGCTTTCTGTTCATGTCAGGAACAGATGTTGAGGATGTGCCAAATGTGTCAAAAAGATCCCCTGTGTTAGTCAGTATTGTACAGATGTGACAGACGAAGATTAGGTCTGGTTTTAGGACCTTCTTTGCTGGTGTACTCTTGAGCTTTAGGGGGAGATGTTCATGTTTACATTTACTGACATGAAACACGGTTGTCAGACTTATTTAACTCATAATGTTTCATAAACAAGgacagtgtgtaaaaaaaagatggacacacgcattttactatttttacttatttacacttctttttacctatttttgtttttctttttgtgggATTAATTATGTGAATGAAGCTTTAAGTTATGAAACTGATTTTGAATACTTTGTTTTTTAGATCATGTCACAGGGTATTGAACATCATACAAACATGTTTACATtgaaatgtatgatttttttatgcatatgtcaaaaatgtctaattaatttgttattttttttaattggactaTGATTTTGTTAATGCAATTTGCTAATAAAGAATGCTACTAATTTTTAACaa

Function

NR:

description
gap junction Cx32.2 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255389.3 True 1711 mRNA 0.41 3 47122168 47124470

Neighbor

gene id symbol gene type direction distance location
LOC103044065 LOC108424424 coding downstream 20537 47096096 ~ 47101631 (-)
LOC103045279 cx43,LOC107675226,LOC107602186,LOC107716890,LOC107598086 coding downstream 27264 47089549 ~ 47094904 (-)
LOC103022574 mdga2,LOC108411484,LOC108257548,LOC107704381 coding downstream 185575 46645637 ~ 46936593 (-)
LOC103047706 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding downstream 607355 46512639 ~ 46514813 (-)
peli2 peli2,LOC103047193,LOC108410474,LOC108258111,LOC100334245,LOC107567396,LOC107574485,LOC106571579 coding downstream 622501 46480645 ~ 46499667 (-)
LOC103043748 LOC108424468 coding upstream 2007 47126477 ~ 47128782 (-)
LOC103033231 LOC103033231,LOC108424426,LOC108257936 coding upstream 4600 47129070 ~ 47134301 (-)
hsdl1 NA coding upstream 10265 47134735 ~ 47139318 (-)
slc35f1 slc35f1,LOC107697151,LOC107743307,LOC107727669,LOC107678858 coding upstream 1201415 48325885 ~ 48446366 (-)
cdk19 cdk19 coding upstream 1320907 48445377 ~ 48539382 (-)
G26783 LOC108424466 non-coding downstream 2162 47117582 ~ 47120006 (-)
G26771 NA non-coding downstream 15844 47105315 ~ 47106324 (-)
G26751 NA non-coding downstream 458205 46662119 ~ 46663963 (-)
LOC111197648 NA non-coding downstream 522737 46578287 ~ 46599431 (-)
G26666 NA non-coding downstream 713104 46395961 ~ 46409064 (-)
G26810 NA non-coding upstream 74394 47198864 ~ 47199418 (-)
G26826 NA non-coding upstream 213951 47338421 ~ 47347966 (-)
G26828 NA non-coding upstream 226143 47350613 ~ 47350891 (-)
LOC111188267 NA non-coding upstream 256372 47380842 ~ 47384068 (-)
G26846 man1a1,LOC107727625 non-coding upstream 310975 47435445 ~ 47569287 (-)
G26754 NA other downstream 383432 46704347 ~ 46738736 (-)
fkbp3 fkbp3 other downstream 586333 46533695 ~ 46535835 (-)
G26695 prpf39,LOC107729032 other downstream 596172 46518871 ~ 46525996 (-)
naa30 naa30,LOC108270341 other downstream 686243 46427417 ~ 46435925 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other downstream 829362 46292087 ~ 46292806 (-)
LOC103039734 LOC108424428 other upstream 1093036 48217506 ~ 48324662 (-)
pln NA other upstream 1153792 48278262 ~ 48288736 (-)
G27145 NA other upstream 1762524 48886994 ~ 48891028 (-)
G27258 NA other upstream 2514289 49638759 ~ 49639444 (-)
G27400 NA other upstream 3357419 50481889 ~ 50531639 (-)

Expression


Co-expression Network